Prupe.5G241300_v2.0.a1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0017536
Physical Location & Seq
Reverse (-)
18167430 .. 18170519
3090 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G241300.1

Sequence Viewer

Length: 786 bp
ATGGCGCCAGTGGGATTACCTCCTGGTTTCAGGTTCCATCCAACAGACGAAGAGCTTGTCAATTATTATCTCAAGAGGAAAATTAATGGCCAAGAGATTGAGCTTGATATCATTCCTGAAGTTGATCTCTACAAATGCGAGCCTTGGGAATTAGCAGAAAAATCATTTTTGCCAAGCAGAGACCCGGAATGGTACTTCTTTGGTCCCCGGGATCGAAAATACCCAAATGGATTTAGAACAAACAGAGCGACGAGAGCAGGATACTGGAAGTCGACTGGGAAAGATAGGAGAGTGACATGCCAGAATCGAGCCATAGGAATGAAGAAGACACTAGTTTACTACAGAGGGCGAGCCCCTCAGGGAATTCGCACCGATTGGGTCATGCACGAATATCGCCTTGATGACAAGGACTCATGCTCCGACGACACCTCTTCCTCTTCCTCTTCCTCATCCCCTTGTGCCGCCATTCAGGATTCTTTTGCATTATGTCGCGTGTTCAAGAAAAATGGTATCTGCTCGGAGATGGAAGAGCAGCAAGGGCAATATAGTGCATCCTTAATTCAGGAAAGATCATCACAAGGTACCACTGGTAGTACTACAAATTTTAATGATTGTGAAACCATGTCGCCGGATATTCCGATGACAGCATCGTCATGCCTGGAGGAAGATGACAAAGACGATTCATGGATGCAGTTCATCACAGATGATCCATGGATGCACCAGTGTTCTACTAACCCTGCTATGCCTGCTGAAGAGCACCTCTCTCATGTCCCCTTCACAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

262

Amino Acids

29.88

Weight (kDa)

5.07

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17730
fragaria_vesca FvH4_5g18130
malus_domestica MD14G1243700.v1.1
prunus_persica Prupe.5G241300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0177481
rosa_laevigata RLG00000005534
rosa_multiflora Rmu_sc0028619.1_g000003
rosa_roxburghii Rroxscaffold_3G00275840
rosa_rugosa Rorug06G0406400
rosa_samantha Rh7AG005900 Rh7BG005800
rosa_wichuraiana Rw7G000480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 649
Acc65I GGTACC 1 cut(s) 581
AccB1I GGYRCC 2 cut(s) 4, 581
AccI GTMKAC 1 cut(s) 272
AccII CGCG 1 cut(s) 492
AciI CCGC 1 cut(s) 462
AclWI GGATC 2 cut(s) 219, 701
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 363, 601
AcuI CTGAAG 2 cut(s) 138, 771
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 194, 583, 595
AgsI TTSAA 1 cut(s) 499
AhlI ACTAGT 1 cut(s) 331
AjnI CCWGG 2 cut(s) 22, 657
AluBI AGCT 2 cut(s) 55, 103
AluI AGCT 2 cut(s) 55, 103
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 219, 701
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 532
ApoI RAATTY 2 cut(s) 363, 601
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AseI ATTAAT 1 cut(s) 84
Asp718I GGTACC 1 cut(s) 581
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 3 cut(s) 185, 208, 209
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 357
BalI TGGCCA 1 cut(s) 90
BanI GGYRCC 2 cut(s) 4, 581
BanII GRGCYC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 1 cut(s) 544
BccI CCATC 2 cut(s) 45, 517
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 2 cut(s) 24, 659
BciVI GTATCC 1 cut(s) 254
BcnI CCSGG 3 cut(s) 185, 208, 209
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 340
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 2 cut(s) 462, 533
BlsI GCNGC 2 cut(s) 463, 534
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 5 cut(s) 24, 185, 208, 209, 659
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 4 cut(s) 6, 35, 205, 583
BmrFI CCNGG 5 cut(s) 24, 185, 208, 209, 659
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 4 cut(s) 560, 656, 678, 705
BmuI ACTGGG 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 746, 778
BpmI CTGGAG 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 3 cut(s) 185, 208, 209
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 143, 206, 207, 710
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bse1I ACTGG 5 cut(s) 8, 269, 280, 592, 721
Bse21I CCTNAGG 1 cut(s) 357
BseBI CCWGG 2 cut(s) 24, 659
BseDI CCNNGG 4 cut(s) 143, 206, 207, 710
BseGI GGATG 5 cut(s) 37, 449, 551, 693, 720
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 5 cut(s) 8, 269, 280, 592, 721
BseXI GCAGC 1 cut(s) 544
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 2 cut(s) 4, 581
BsiHKAI GWGCWC 1 cut(s) 759
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 3 cut(s) 185, 208, 629
BslFI GGGAC 2 cut(s) 189, 755
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 2 cut(s) 189, 755
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 355, 759
Bsp143I GATC 4 cut(s) 124, 211, 569, 706
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 4 cut(s) 6, 35, 205, 583
BspPI GGATC 2 cut(s) 219, 701
BspQI GCTCTTC 3 cut(s) 45, 522, 747
BspT107I GGYRCC 2 cut(s) 4, 581
BspTNI GGTCTC 1 cut(s) 174
BsrI ACTGG 5 cut(s) 8, 269, 280, 592, 721
BssECI CCNNGG 4 cut(s) 143, 206, 207, 710
BssMI GATC 4 cut(s) 124, 211, 569, 706
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 143, 710
Bst2UI CCWGG 2 cut(s) 24, 659
Bst6I CTCTTC 6 cut(s) 45, 436, 442, 448, 522, 747
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 140, 351, 747
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 710
BstF5I GGATG 5 cut(s) 37, 449, 551, 693, 720
BstFNI CGCG 1 cut(s) 492
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 127, 214, 572, 709
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 4 cut(s) 124, 211, 569, 706
BstMWI GCNNNNNNNGC 3 cut(s) 254, 538, 746
BstNI CCWGG 2 cut(s) 24, 659
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 5 cut(s) 22, 183, 206, 207, 657
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 332
Bsu36I CCTNAGG 1 cut(s) 357
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 710
BtsCI GGATG 5 cut(s) 37, 449, 551, 693, 720
BtsIMutI CAGTG 3 cut(s) 15, 585, 728
Cac8I GCNNGC 3 cut(s) 140, 351, 747
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 203
Cfr9I CCCGGG 1 cut(s) 207
Csp6I GTAC 3 cut(s) 193, 582, 594
CviAII CATG 8 cut(s) 297, 382, 414, 622, 654, 684, 711, 767
CviJI RGCY 6 cut(s) 55, 90, 103, 142, 311, 353
CviKI_1 RGCY 6 cut(s) 55, 90, 103, 142, 311, 353
CviQI GTAC 3 cut(s) 193, 582, 594
DdeI CTNAG 1 cut(s) 357
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 126, 213, 571, 708
DpnII GATC 4 cut(s) 124, 211, 569, 706
DrdI GACNNNNNNGTC 1 cut(s) 649
DseDI GACNNNNNNGTC 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 6 cut(s) 45, 436, 442, 448, 522, 747
EarI CTCTTC 6 cut(s) 45, 436, 442, 448, 522, 747
Eco130I CCWWGG 2 cut(s) 143, 710
Eco24I GRGCYC 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 138, 771
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 22, 657
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 143, 710
EcoT38I GRGCYC 1 cut(s) 355
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 143, 710
FaeI CATG 8 cut(s) 300, 385, 417, 625, 657, 687, 714, 770
FaqI GGGAC 2 cut(s) 189, 755
FatI CATG 8 cut(s) 296, 381, 413, 621, 653, 683, 710, 766
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 2 cut(s) 462, 533
FokI GGATG 5 cut(s) 24, 436, 538, 700, 727
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 2 cut(s) 462, 533
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 462, 533
GsuI CTGGAG 1 cut(s) 680
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 90
HapII CCGG 3 cut(s) 185, 208, 629
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 300, 385, 417, 625, 657, 687, 714, 770
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 4 cut(s) 304, 410, 473, 680
HpaII CCGG 3 cut(s) 185, 208, 629
Hpy166II GTNNAC 2 cut(s) 273, 337
Hpy188I TCNGA 3 cut(s) 421, 520, 639
Hpy188III TCNNGA 5 cut(s) 73, 116, 470, 499, 563
Hpy8I GTNNAC 2 cut(s) 273, 337
Hpy99I CGWCG 2 cut(s) 253, 425
HpyAV CCTTC 1 cut(s) 784
HpyCH4V TGCA 5 cut(s) 385, 482, 551, 691, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 538, 746
HpyF3I CTNAG 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 300, 385, 417, 625, 657, 687, 714, 770
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 585
Kzo9I GATC 4 cut(s) 124, 211, 569, 706
LguI GCTCTTC 3 cut(s) 45, 522, 747
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 4 cut(s) 560, 656, 678, 705
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 126, 213, 571, 708
MboI GATC 4 cut(s) 124, 211, 569, 706
MboII GAAGA 9 cut(s) 62, 334, 337, 423, 429, 435, 539, 677, 764
MhlI GDGCHC 2 cut(s) 355, 759
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 6 cut(s) 61, 81, 149, 363, 558, 601
MluNI TGGCCA 1 cut(s) 90
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 65, 444
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
MseI TTAA 3 cut(s) 84, 557, 606
MslI CAYNNNNRTG 2 cut(s) 317, 652
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 3 cut(s) 185, 208, 629
MspR9I CCNGG 5 cut(s) 24, 185, 208, 209, 659
MvaI CCWGG 2 cut(s) 24, 659
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 254, 538, 746
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 3 cut(s) 185, 208, 209
NcoI CCATGG 1 cut(s) 710
NdeII GATC 4 cut(s) 124, 211, 569, 706
NlaIII CATG 8 cut(s) 300, 385, 417, 625, 657, 687, 714, 770
NlaIV GGNNCC 4 cut(s) 6, 35, 205, 583
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 300
PciSI GCTCTTC 3 cut(s) 45, 522, 747
PfeI GAWTC 3 cut(s) 304, 473, 680
PkrI GCNGC 2 cut(s) 463, 534
PleI GAGTC 1 cut(s) 404
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 404
PshBI ATTAAT 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 22, 657
PspGI CCWGG 2 cut(s) 22, 657
PspN4I GGNNCC 4 cut(s) 6, 35, 205, 583
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 3 cut(s) 194, 583, 595
RsaNI GTAC 3 cut(s) 193, 582, 594
RseI CAYNNNNRTG 2 cut(s) 317, 652
SalI GTCGAC 1 cut(s) 271
SapI GCTCTTC 3 cut(s) 45, 522, 747
SaqAI TTAA 3 cut(s) 84, 557, 606
SatI GCNGC 2 cut(s) 462, 533
Sau3AI GATC 4 cut(s) 124, 211, 569, 706
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 5 cut(s) 24, 185, 208, 209, 659
SduI GDGCHC 2 cut(s) 355, 759
SetI ASST 7 cut(s) 22, 35, 57, 105, 431, 583, 762
SfaNI GCATC 4 cut(s) 560, 656, 678, 705
SfcI CTRYAG 1 cut(s) 340
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 203
SmaI CCCGGG 1 cut(s) 209
SmiMI CAYNNNNRTG 2 cut(s) 317, 652
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 331
Sse9I AATT 6 cut(s) 61, 81, 149, 363, 558, 601
SsiI CCGC 1 cut(s) 462
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 5 cut(s) 22, 183, 206, 207, 657
StyI CCWWGG 2 cut(s) 143, 710
TaqI TCGA 3 cut(s) 214, 272, 307
TasI AATT 6 cut(s) 61, 81, 149, 363, 558, 601
TatI WGTACW 1 cut(s) 593
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 3 cut(s) 304, 473, 680
Tru1I TTAA 3 cut(s) 84, 557, 606
Tru9I TTAA 3 cut(s) 84, 557, 606
TscAI CASTG 3 cut(s) 15, 592, 728
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 335, 672, 685
TspMI CCCGGG 1 cut(s) 207
TspRI CASTG 3 cut(s) 15, 592, 728
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 2 cut(s) 363, 601
XceI RCATGY 1 cut(s) 300
XmaI CCCGGG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.