Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012737

Physical Location & Seq

Genomic Coordinates Forward (+)

6152062 .. 6153814

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACAACGGCGTGTCCGGCGAGGACAAGCTCACTAATGGACGATCTCTTGGGCCTCCTTAGAATCCGTATCAAACGTGGCGTCAATTTAGCCGTCCGTGACATCAGTAGCAGCGATCCTTACGTCGTCGTCAAGATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTTAATCCAGAATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGACGGTGTATGATCACGACATGTTTAGCAAAGACGACAAGATGGGCGATGCTGAGTTCGAGATAAAGCCCTATATTGAGGCTTTGAGGATGCAACTCGATGGACTTCCTAGTGGAACCATTGTGACCACGGTTAAGCCAAGTCGTCGTAACTGTCTAGCCGAGGAGTCACGTGTCACCTGGGTCGACGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAGAGGTCGAGGCTCAGCTTCAATGGATTGACCTCCCTGGCTCCAAGGGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

177

Amino Acids

19.9

Weight (kDa)

5.75

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	18 - 104	1.7e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17980
fragaria_vesca	FvH4_5g17320 FvH4_5g17320
malus_domestica	MD14G1236400.v1.1
prunus_persica	Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1
pyrus_communis	pycom14g19740
rosa_chinensis	RchiOBHm_Chr7g0178451
rosa_laevigata	RLG00000005447
rosa_multiflora	Rmu_sc0017248.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274910
rosa_rugosa	Rorug06G0417100
rosa_samantha	Rh7AG015600 Rh7CG015900 Rh7DG015500
rosa_wichuraiana	Rw0G010160 Rw7G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	2 cut(s)	110, 453
AcvI	CACGTG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	3 cut(s)	261, 412, 466
AgsI	TTSAA	2 cut(s)	154, 500
AjnI	CCWGG	3 cut(s)	419, 441, 514
AluBI	AGCT	3 cut(s)	30, 436, 496
AluI	AGCT	3 cut(s)	30, 436, 496
AlwI	GGATC	2 cut(s)	110, 453
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	111
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	409
BauI	CACGAG	1 cut(s)	159
BbrPI	CACGTG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	3 cut(s)	130, 277, 335
BceAI	ACGGC	3 cut(s)	24, 77, 445
BciT130I	CCWGG	3 cut(s)	421, 443, 516
BclI	TGATCA	1 cut(s)	253
BfaI	CTAG	2 cut(s)	351, 398
BisI	GCNGC	1 cut(s)	112
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	3 cut(s)	421, 443, 516
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	358, 520
BmrFI	CCNGG	3 cut(s)	421, 443, 516
BmsI	GCATC	2 cut(s)	280, 321
BoxI	GACNNNNGTC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	5 cut(s)	369, 402, 420, 514, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	421, 443, 516
BseDI	CCNNGG	5 cut(s)	369, 402, 420, 514, 522
BseGI	GGATG	1 cut(s)	336
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	3 cut(s)	285, 469, 506
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	123
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	43, 115, 253, 445
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	3 cut(s)	286, 468, 505
BspLI	GGNNCC	2 cut(s)	358, 520
BspPI	GGATC	2 cut(s)	110, 453
BssECI	CCNNGG	5 cut(s)	369, 402, 420, 514, 522
BssMI	GATC	4 cut(s)	43, 115, 253, 445
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	421, 443, 516
Bst4CI	ACNGT	4 cut(s)	235, 247, 373, 395
BstACI	GRCGYC	1 cut(s)	81
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	4 cut(s)	59, 294, 455, 492
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	4 cut(s)	46, 118, 256, 448
BstMBI	GATC	4 cut(s)	43, 115, 253, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	3 cut(s)	421, 443, 516
BstNSI	RCATGY	2 cut(s)	265, 470
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	3 cut(s)	419, 441, 514
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	1 cut(s)	70
CviAII	CATG	2 cut(s)	262, 467
DdeI	CTNAG	4 cut(s)	59, 294, 455, 492
DpnI	GATC	4 cut(s)	45, 117, 255, 447
DpnII	GATC	4 cut(s)	43, 115, 253, 445
Eco130I	CCWWGG	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	413
EcoRII	CCWGG	3 cut(s)	419, 441, 514
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	2 cut(s)	265, 470
FaiI	YATR	5 cut(s)	252, 263, 315, 468, 532
FatI	CATG	2 cut(s)	261, 466
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	351, 398
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	265, 470
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	5 cut(s)	63, 157, 205, 221, 407
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	5 cut(s)	133, 185, 241, 257, 301
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	4 cut(s)	128, 131, 390, 431
HpyCH4III	ACNGT	4 cut(s)	235, 247, 373, 395
HpyCH4IV	ACGT	3 cut(s)	76, 123, 412
HpyCH4V	TGCA	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	4 cut(s)	59, 294, 455, 492
HpySE526I	ACGT	3 cut(s)	76, 123, 412
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	265, 470
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	43, 115, 253, 445
LmnI	GCTCC	1 cut(s)	524
LpnPI	CCDG	8 cut(s)	30, 198, 406, 428, 433, 455, 501, 528
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	2 cut(s)	280, 321
MaeI	CTAG	2 cut(s)	351, 398
MaeII	ACGT	3 cut(s)	76, 123, 412
MaeIII	GTNAC	6 cut(s)	98, 214, 364, 389, 408, 415
MalI	GATC	4 cut(s)	45, 117, 255, 447
MboI	GATC	4 cut(s)	43, 115, 253, 445
MboII	GAAGA	2 cut(s)	166, 209
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	2 cut(s)	85, 149
MlyI	GAGTC	4 cut(s)	151, 199, 215, 416
MnlI	CCTC	9 cut(s)	15, 65, 248, 313, 321, 397, 475, 481, 521
MseI	TTAA	3 cut(s)	168, 180, 375
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	3 cut(s)	421, 443, 516
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	3 cut(s)	421, 443, 516
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	4 cut(s)	43, 115, 253, 445
NlaIII	CATG	2 cut(s)	265, 470
NlaIV	GGNNCC	2 cut(s)	358, 520
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	5 cut(s)	98, 214, 364, 408, 415
NspI	RCATGY	2 cut(s)	265, 470
PciI	ACATGT	2 cut(s)	261, 466
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	4 cut(s)	151, 199, 215, 415
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
PpsI	GAGTC	4 cut(s)	151, 199, 215, 415
Ppu21I	YACGTR	1 cut(s)	413
PscI	ACATGT	2 cut(s)	261, 466
PshAI	GACNNNNGTC	1 cut(s)	161
Psp6I	CCWGG	3 cut(s)	419, 441, 514
PspCI	CACGTG	1 cut(s)	413
PspGI	CCWGG	3 cut(s)	419, 441, 514
PspN4I	GGNNCC	2 cut(s)	358, 520
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	445
SalI	GTCGAC	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	168, 180, 375
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	4 cut(s)	43, 115, 253, 445
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	4 cut(s)	151, 199, 215, 416
ScrFI	CCNGG	3 cut(s)	421, 443, 516
SetI	ASST	9 cut(s)	32, 79, 126, 415, 422, 438, 486, 498, 513
SfaNI	GCATC	2 cut(s)	280, 321
Sse9I	AATT	2 cut(s)	85, 149
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	2 cut(s)	351, 398
StyD4I	CCNGG	3 cut(s)	419, 441, 514
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	235, 247, 373, 395
TaiI	ACGT	3 cut(s)	79, 126, 415
TaqI	TCGA	4 cut(s)	300, 339, 426, 486
TasI	AATT	2 cut(s)	85, 149
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	3 cut(s)	168, 180, 375
Tru9I	TTAA	3 cut(s)	168, 180, 375
TseFI	GTSAC	5 cut(s)	98, 214, 364, 408, 415
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	5 cut(s)	98, 214, 364, 408, 415
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	3 cut(s)	56, 86, 202
XceI	RCATGY	2 cut(s)	265, 470
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	2 cut(s)	351, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.