Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012737

Physical Location & Seq

Genomic Coordinates Reverse (-)

9900473 .. 9902267

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17320.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGACGGACTCACCTGGTGGTCGAGGGTCGAAATCTCTCATGGAGAATCTGCTCGGTCTTCTCCGCATCCGCGTCAAGCGCGGCGTTAACCTCGCCGTCCGCGACGTCCGTAGCAGCGATCCTTACATCGTTATCAAGATGGGCAAACAGAAACTGAAGACTCGTGTGATTAAAAAGGATGTTAATCCAGAGTGGAATGAAGATCTTACTCTTTCTGTTACGGACCCTTCTATTCCAGTCAAGCTGACTGTGTATGATCACGATACGTTCAGCAAGGATGATAAAATGGGGGATGCAGAGTTCGACATAGTACCTTATATTGAGGCATTGAAGATGGATTATGGAGGCATCCCAAGCGGCACGATTATAACAAGAGTACAACCTTGCAGGCAAAACTGCCTATCTGAGGAGAGCTGCGTCCGCTGGAGCGAAGGCAAGGTCATCCAAGATCTCTGTCTCAGATTGAGAAATGTGGAATGCGGTGAAGTTGAAATCCAGTTGCAGTGGATCGATCTTCCTGGTTCCAAGGGCTTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

180

Amino Acids

20.11

Weight (kDa)

6.6

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	19 - 104	4e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17980
fragaria_vesca	FvH4_5g17320 FvH4_5g17320
malus_domestica	MD14G1236400.v1.1
prunus_persica	Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1
pyrus_communis	pycom14g19740
rosa_chinensis	RchiOBHm_Chr7g0178451
rosa_laevigata	RLG00000005447
rosa_multiflora	Rmu_sc0017248.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274910
rosa_rugosa	Rorug06G0417100
rosa_samantha	Rh7AG015600 Rh7CG015900 Rh7DG015500
rosa_wichuraiana	Rw0G010160 Rw7G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AatII	GACGTC	1 cut(s)	108
AccII	CGCG	3 cut(s)	72, 81, 102
AciI	CCGC	7 cut(s)	64, 70, 81, 100, 357, 421, 480
AclWI	GGATC	2 cut(s)	113, 515
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	2 cut(s)	312, 378
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	331, 491
AjnI	CCWGG	2 cut(s)	13, 517
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	244, 414
AluI	AGCT	2 cut(s)	244, 414
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	113, 515
AlwNI	CAGNNNCTG	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	114, 414
ArsI	GACNNNNNNTTYG	2 cut(s)	423, 455
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	3, 494
AvaII	GGWCC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	50, 164
BbvI	GCAGC	2 cut(s)	126, 401
BccI	CCATC	2 cut(s)	133, 328
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	2 cut(s)	15, 519
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	461
BglII	AGATCT	2 cut(s)	202, 448
BisI	GCNGC	4 cut(s)	82, 115, 358, 415
BlsI	GCNGC	4 cut(s)	83, 116, 359, 416
Bme1390I	CCNGG	2 cut(s)	15, 519
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	225, 523
BmrFI	CCNGG	2 cut(s)	15, 519
BmsI	GCATC	3 cut(s)	75, 283, 357
BpiI	GAAGAC	2 cut(s)	50, 164
BpmI	CTGGAG	1 cut(s)	445
Bsa29I	ATCGAT	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	236, 496
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	15, 519
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	6 cut(s)	66, 184, 283, 298, 348, 441
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	396, 472
BseNI	ACTGG	2 cut(s)	236, 496
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	2 cut(s)	126, 401
Bsh1236I	CGCG	3 cut(s)	72, 81, 102
BshVI	ATCGAT	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	482
Bsp143I	GATC	6 cut(s)	118, 202, 256, 448, 507, 511
BspACI	CCGC	7 cut(s)	64, 70, 81, 100, 357, 421, 480
BspCNI	CTCAG	2 cut(s)	397, 471
BspDI	ATCGAT	1 cut(s)	510
BspFNI	CGCG	3 cut(s)	72, 81, 102
BspHI	TCATGA	1 cut(s)	536
BspLI	GGNNCC	2 cut(s)	225, 523
BspPI	GGATC	2 cut(s)	113, 515
BsrI	ACTGG	2 cut(s)	236, 496
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	6 cut(s)	118, 202, 256, 448, 507, 511
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	15, 519
Bst4CI	ACNGT	1 cut(s)	250
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	405, 458
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstF5I	GGATG	6 cut(s)	66, 184, 283, 298, 348, 441
BstFNI	CGCG	3 cut(s)	72, 81, 102
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	6 cut(s)	121, 205, 259, 451, 510, 514
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	6 cut(s)	118, 202, 256, 448, 507, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 354, 420
BstNI	CCWGG	2 cut(s)	15, 519
BstSCI	CCNGG	2 cut(s)	13, 517
BstUI	CGCG	3 cut(s)	72, 81, 102
BstV1I	GCAGC	2 cut(s)	126, 401
BstV2I	GAAGAC	2 cut(s)	50, 164
BstX2I	RGATCY	2 cut(s)	202, 448
BstYI	RGATCY	2 cut(s)	202, 448
Bsu15I	ATCGAT	1 cut(s)	510
BsuTUI	ATCGAT	1 cut(s)	510
BtsCI	GGATG	6 cut(s)	66, 184, 283, 298, 348, 441
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	389
CaiI	CAGNNNCTG	1 cut(s)	154
CciI	TCATGA	1 cut(s)	536
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	510
CseI	GACGC	2 cut(s)	61, 406
CsiI	ACCWGGT	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	311, 377
CviAII	CATG	2 cut(s)	40, 537
CviJI	RGCY	3 cut(s)	244, 414, 531
CviKI_1	RGCY	3 cut(s)	244, 414, 531
CviQI	GTAC	2 cut(s)	311, 377
DdeI	CTNAG	2 cut(s)	405, 458
DpnI	GATC	6 cut(s)	120, 204, 258, 450, 509, 513
DpnII	GATC	6 cut(s)	118, 202, 256, 448, 507, 511
DraIII	CACNNNGTG	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	13, 517
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	2 cut(s)	43, 540
FaiI	YATR	7 cut(s)	41, 255, 308, 318, 342, 368, 538
FatI	CATG	2 cut(s)	39, 536
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	82, 115, 358, 415
FokI	GGATG	6 cut(s)	53, 191, 290, 305, 335, 428
Fsp4HI	GCNGC	4 cut(s)	82, 115, 358, 415
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	4 cut(s)	82, 115, 358, 415
GsuI	CTGGAG	1 cut(s)	445
HgaI	GACGC	2 cut(s)	61, 406
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	43, 540
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	3 cut(s)	8, 46, 160
HpaI	GTTAAC	1 cut(s)	88
HphI	GGTGA	2 cut(s)	3, 494
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	406, 461
Hpy188III	TCNNGA	4 cut(s)	136, 188, 260, 537
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	237, 425
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	105, 266
HpyCH4V	TGCA	3 cut(s)	296, 387, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 354, 420
HpyF3I	CTNAG	2 cut(s)	405, 458
HpySE526I	ACGT	2 cut(s)	105, 266
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	43, 540
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	256
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	6 cut(s)	118, 202, 256, 448, 507, 511
LmnI	GCTCC	1 cut(s)	426
LpnPI	CCDG	8 cut(s)	27, 201, 249, 373, 409, 504, 509, 531
Lsp1109I	GCAGC	2 cut(s)	126, 401
LweI	GCATC	3 cut(s)	75, 283, 357
MabI	ACCWGGT	1 cut(s)	13
MaeII	ACGT	2 cut(s)	105, 266
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	6 cut(s)	120, 204, 258, 450, 509, 513
MboI	GATC	6 cut(s)	118, 202, 256, 448, 507, 511
MboII	GAAGA	5 cut(s)	50, 169, 212, 343, 506
MflI	RGATCY	2 cut(s)	202, 448
MlyI	GAGTC	2 cut(s)	2, 154
MnlI	CCTC	5 cut(s)	17, 101, 316, 338, 400
MseI	TTAA	3 cut(s)	87, 171, 183
MspA1I	CMGCKG	1 cut(s)	423
MspR9I	CCNGG	2 cut(s)	15, 519
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	2 cut(s)	15, 519
MvnI	CGCG	3 cut(s)	72, 81, 102
MwoI	GCNNNNNNNGC	3 cut(s)	78, 354, 420
NdeII	GATC	6 cut(s)	118, 202, 256, 448, 507, 511
NlaIII	CATG	2 cut(s)	43, 540
NlaIV	GGNNCC	2 cut(s)	225, 523
PagI	TCATGA	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	83, 116, 359, 416
PleI	GAGTC	2 cut(s)	2, 154
PpsI	GAGTC	2 cut(s)	2, 154
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	13, 517
PspGI	CCWGG	2 cut(s)	13, 517
PspN4I	GGNNCC	2 cut(s)	225, 523
PspPI	GGNCC	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	202, 448
RsaI	GTAC	2 cut(s)	312, 378
RsaNI	GTAC	2 cut(s)	311, 377
SaqAI	TTAA	3 cut(s)	87, 171, 183
SatI	GCNGC	4 cut(s)	82, 115, 358, 415
Sau3AI	GATC	6 cut(s)	118, 202, 256, 448, 507, 511
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	2, 154
ScrFI	CCNGG	2 cut(s)	15, 519
SetI	ASST	9 cut(s)	16, 93, 108, 246, 269, 316, 385, 416, 441
SexAI	ACCWGGT	1 cut(s)	13
SfaNI	GCATC	3 cut(s)	75, 283, 357
SinI	GGWCC	1 cut(s)	223
SsiI	CCGC	7 cut(s)	64, 70, 81, 100, 357, 421, 480
StyD4I	CCNGG	2 cut(s)	13, 517
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	2 cut(s)	108, 269
TaqI	TCGA	4 cut(s)	22, 29, 303, 510
TaqII	GACCGA	1 cut(s)	44
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	2 cut(s)	84, 360
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	3 cut(s)	87, 171, 183
Tru9I	TTAA	3 cut(s)	87, 171, 183
TscAI	CASTG	1 cut(s)	509
TseI	GCWGC	2 cut(s)	114, 414
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	3 cut(s)	20, 98, 236
TspRI	CASTG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	223
XagI	CCTNNNNNAGG	1 cut(s)	404
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.