Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012737

Physical Location & Seq

Genomic Coordinates Reverse (-)

17740068 .. 17742834

Gene Structure 2767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G233300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGACGGACTCACCAAAGACACCAGCGAAAGGAGGTAGCAAGTCACTCATGGAGAACTTGCTCGGTCTTCTCCGAATCCGCGTCAAACGCGGTGTTAATCTCGCCGTTCGCGACGTCCGTAGCAGCGACCCCTACGTCGTCATCAAGATGGGTAAACAGAAACTTAAAACTCGTGTAATTAAAAAGGATGTTAACCCAGAGTGGAATGAAGATCTTACACTTTCTGTTACAGACCCCAGCATTCCAATCAAGCTGACTGTGTATGACCATGACACATTCAGCAAGGATGACAAAATGGGAGATGGAGAATTTGGCATCGTACCTTATATAGAGGCATTGAAGATGAACTTAGAAGGGGTCGCAAGTGGCACGACCGTCATGAGAATACAACCAAGCAGGGCCAACTGCCTAGCTGAGGAGAGCTGCATTCTCTGGAAGGATGGGAAGGTGGTCCAAGACATGTGCCTCAGACTGAGAAATGTGGAATGTGGTGAAGTGGAAATTCAGTTGCAATGGATTGACCTTCCTGGTTCCAAGGGCTTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

183

Amino Acids

20.26

Weight (kDa)

8.3

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17980
fragaria_vesca	FvH4_5g17320 FvH4_5g17320
malus_domestica	MD14G1236400.v1.1
prunus_persica	Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1
pyrus_communis	pycom14g19740
rosa_chinensis	RchiOBHm_Chr7g0178451
rosa_laevigata	RLG00000005447
rosa_multiflora	Rmu_sc0017248.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274910
rosa_rugosa	Rorug06G0417100
rosa_samantha	Rh7AG015600 Rh7CG015900 Rh7DG015500
rosa_wichuraiana	Rw0G010160 Rw7G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AatII	GACGTC	1 cut(s)	117
AccII	CGCG	3 cut(s)	81, 90, 111
AciI	CCGC	2 cut(s)	79, 90
AcsI	RAATTY	2 cut(s)	308, 501
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	29, 415
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	3 cut(s)	253, 413, 423
AluI	AGCT	3 cut(s)	253, 413, 423
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	123, 423
ApoI	RAATTY	2 cut(s)	308, 501
AspS9I	GGNCC	2 cut(s)	399, 451
AsuHPI	GGTGA	2 cut(s)	3, 503
AvaII	GGWCC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	135, 410
BccI	CCATC	3 cut(s)	142, 296, 434
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	528
BfaI	CTAG	1 cut(s)	410
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	2 cut(s)	124, 424
BlsI	GCNGC	2 cut(s)	125, 425
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	399, 451
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 415
Bse3DI	GCAATG	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	3 cut(s)	193, 292, 445
BseLI	CCNNNNNNNGG	2 cut(s)	29, 415
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	3 cut(s)	405, 464, 481
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	2 cut(s)	135, 410
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	3 cut(s)	81, 90, 111
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	29, 415
BsmI	GAATGC	2 cut(s)	240, 426
BsnI	GGCC	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	211
Bsp68I	TCGCGA	1 cut(s)	111
BspACI	CCGC	2 cut(s)	79, 90
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	3 cut(s)	406, 465, 480
BspFNI	CGCG	3 cut(s)	81, 90, 111
BspHI	TCATGA	2 cut(s)	378, 545
BspLI	GGNNCC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	259, 376
BstACI	GRCGYC	1 cut(s)	114
BstDEI	CTNAG	4 cut(s)	349, 414, 467, 473
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	3 cut(s)	193, 292, 445
BstFNI	CGCG	3 cut(s)	81, 90, 111
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	526
BstUI	CGCG	3 cut(s)	81, 90, 111
BstV1I	GCAGC	2 cut(s)	135, 410
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	193, 292, 445
BtuMI	TCGCGA	1 cut(s)	111
CciI	TCATGA	2 cut(s)	378, 545
Cfr13I	GGNCC	2 cut(s)	399, 451
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	5 cut(s)	49, 269, 379, 460, 546
CviJI	RGCY	5 cut(s)	253, 401, 413, 423, 540
CviKI_1	RGCY	5 cut(s)	253, 401, 413, 423, 540
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	4 cut(s)	349, 414, 467, 473
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	451
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	5 cut(s)	52, 272, 382, 463, 549
FaiI	YATR	8 cut(s)	50, 264, 270, 327, 329, 380, 461, 547
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	5 cut(s)	48, 268, 378, 459, 545
Fnu4HI	GCNGC	2 cut(s)	124, 424
FokI	GGATG	3 cut(s)	200, 299, 452
Fsp4HI	GCNGC	2 cut(s)	124, 424
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	2 cut(s)	124, 424
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	401
HgaI	GACGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	5 cut(s)	52, 272, 382, 463, 549
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	8, 75
HpaI	GTTAAC	1 cut(s)	193
HphI	GGTGA	2 cut(s)	3, 503
Hpy166II	GTNNAC	2 cut(s)	155, 193
Hpy188I	TCNGA	2 cut(s)	74, 470
Hpy188III	TCNNGA	5 cut(s)	110, 145, 379, 433, 546
Hpy8I	GTNNAC	2 cut(s)	155, 193
Hpy99I	CGWCG	2 cut(s)	116, 140
HpyAV	CCTTC	4 cut(s)	347, 430, 439, 533
HpyCH4III	ACNGT	2 cut(s)	259, 376
HpyCH4IV	ACGT	2 cut(s)	114, 135
HpyCH4V	TGCA	2 cut(s)	426, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	4 cut(s)	349, 414, 467, 473
HpySE526I	ACGT	2 cut(s)	114, 135
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	52, 272, 382, 463, 549
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	7 cut(s)	36, 210, 250, 382, 418, 513, 540
Lsp1109I	GCAGC	2 cut(s)	135, 410
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	2 cut(s)	114, 135
MaeIII	GTNAC	2 cut(s)	42, 226
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	59, 221, 352
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	3 cut(s)	177, 308, 501
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	4 cut(s)	26, 325, 409, 476
MseI	TTAA	4 cut(s)	96, 165, 180, 192
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	2 cut(s)	240, 426
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	3 cut(s)	81, 90, 111
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	5 cut(s)	52, 272, 382, 463, 549
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	42
NruI	TCGCGA	1 cut(s)	111
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	2 cut(s)	378, 545
PciI	ACATGT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 115
PctI	GAATGC	2 cut(s)	240, 426
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	125, 425
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PscI	ACATGT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	2 cut(s)	399, 451
PsuI	RGATCY	1 cut(s)	211
RruI	TCGCGA	1 cut(s)	111
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	96, 165, 180, 192
SatI	GCNGC	2 cut(s)	124, 424
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	2 cut(s)	399, 451
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	528
SetI	ASST	9 cut(s)	37, 117, 138, 255, 325, 415, 425, 450, 525
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	177, 308, 501
SsiI	CCGC	2 cut(s)	79, 90
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	259, 376
TaiI	ACGT	2 cut(s)	117, 138
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	177, 308, 501
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	4 cut(s)	96, 165, 180, 192
Tru9I	TTAA	4 cut(s)	96, 165, 180, 192
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	2 cut(s)	123, 423
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	222, 359
TspGWI	ACGGA	2 cut(s)	20, 107
VpaK11BI	GGWCC	1 cut(s)	451
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	2 cut(s)	308, 501
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	1 cut(s)	410
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.