Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012737

Physical Location & Seq

Genomic Coordinates Reverse (-)

31649663 .. 31651953

Gene Structure 2291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1236400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCGACGGACTCACCAAAGAAACCGGCGCAAGGCGGTAGCAAGTCACTCATGGAGAATCTGCTAGGTCTTCTCCGAATCCGCGTCAAGCGCGGTGTTAATCTCGCCGTCCGCGACGTCCGTAGCAGCGATCCCTACGTCGTCATCAAGATGGGTAAGCAGAAACTGAAGACTCGTGTAATTAAAAAGGATATTAACCCAGAGTGGAATGAAGATCTTACTCTGTCTATTACAGACCCCAGTATACCTATCAAGCTGACTGTGTTTGACCATGACACATTCAGCAAGGATGACAAAATGGGAGATGCAGAATTCGGCATATCGCCTTATTTAGAGGCGTTGAAGATGAACTTGGAAGGCGTCCCAAGCGGCACTACGGTATCGAGAATACAACCAGATAGGGCAAACTGCCTAGCTGAAGAGAGCTGCATCCAATGGAAGGATGGGAAGGTGGTGCAAGACATGTGCCTCAGATTGAGAAATGTCGAATGCGGCGAGGTCGAAGTCCAGTTGCAATGGATTGACCTTCCTGGTTCCAAGGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

7.61

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	23 - 109	5.4e-25	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17980
fragaria_vesca	FvH4_5g17320 FvH4_5g17320
malus_domestica	MD14G1236400.v1.1
prunus_persica	Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1
pyrus_communis	pycom14g19740
rosa_chinensis	RchiOBHm_Chr7g0178451
rosa_laevigata	RLG00000005447
rosa_multiflora	Rmu_sc0017248.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274910
rosa_rugosa	Rorug06G0417100
rosa_samantha	Rh7AG015600 Rh7CG015900 Rh7DG015500
rosa_wichuraiana	Rw0G010160 Rw7G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccI	GTMKAC	2 cut(s)	5, 244
AccII	CGCG	3 cut(s)	84, 93, 114
AciI	CCGC	6 cut(s)	36, 82, 93, 112, 369, 492
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	188, 438
AcyI	GRCGYC	2 cut(s)	117, 360
AfiI	CCNNNNNNNGG	2 cut(s)	32, 439
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	256, 416, 426
AluI	AGCT	3 cut(s)	256, 416, 426
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	126, 426
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	31, 93
AsuHPI	GGTGA	1 cut(s)	6
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
BauI	CACGAG	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	62, 176
BbvI	GCAGC	2 cut(s)	138, 413
BccI	CCATC	2 cut(s)	145, 437
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	531
BfaI	CTAG	2 cut(s)	65, 413
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	4 cut(s)	127, 370, 427, 493
BlsI	GCNGC	4 cut(s)	128, 371, 428, 494
Bme1390I	CCNGG	1 cut(s)	531
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	295, 438
BmuI	ACTGGG	1 cut(s)	234
BpiI	GAAGAC	2 cut(s)	62, 176
BsaHI	GRCGYC	2 cut(s)	117, 360
BsaJI	CCNNGG	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 439
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	240, 508
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	3 cut(s)	295, 429, 448
BseLI	CCNNNNNNNGG	2 cut(s)	32, 439
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	2 cut(s)	240, 508
BseXI	GCAGC	2 cut(s)	138, 413
Bsh1236I	CGCG	3 cut(s)	84, 93, 114
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	32, 439
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	130, 214
BspACI	CCGC	6 cut(s)	36, 82, 93, 112, 369, 492
BspCNI	CTCAG	1 cut(s)	483
BspFNI	CGCG	3 cut(s)	84, 93, 114
BspLI	GGNNCC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	240, 508
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	2 cut(s)	130, 214
BssNAI	GTATAC	1 cut(s)	245
BssNI	GRCGYC	2 cut(s)	117, 360
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	537
Bst1107I	GTATAC	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	262, 379
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	2 cut(s)	117, 360
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	3 cut(s)	295, 429, 448
BstFNI	CGCG	3 cut(s)	84, 93, 114
BstHHI	GCGC	2 cut(s)	31, 93
BstKTI	GATC	2 cut(s)	133, 217
BstMBI	GATC	2 cut(s)	130, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 366
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	529
BstUI	CGCG	3 cut(s)	84, 93, 114
BstV1I	GCAGC	2 cut(s)	138, 413
BstV2I	GAAGAC	2 cut(s)	62, 176
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BstZ17I	GTATAC	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	295, 429, 448
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	2 cut(s)	31, 93
Cfr10I	RCCGGY	1 cut(s)	25
CseI	GACGC	2 cut(s)	73, 349
CviAII	CATG	3 cut(s)	52, 272, 463
CviJI	RGCY	3 cut(s)	256, 416, 426
CviKI_1	RGCY	3 cut(s)	256, 416, 426
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	2 cut(s)	132, 216
DpnII	GATC	2 cut(s)	130, 214
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	537
Eco57I	CTGAAG	2 cut(s)	188, 438
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	3 cut(s)	55, 275, 466
FaiI	YATR	6 cut(s)	53, 245, 273, 320, 464, 547
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	51, 271, 462
FblI	GTMKAC	2 cut(s)	5, 244
Fnu4HI	GCNGC	4 cut(s)	127, 370, 427, 493
FokI	GGATG	3 cut(s)	302, 416, 455
Fsp4HI	GCNGC	4 cut(s)	127, 370, 427, 493
FspBI	CTAG	2 cut(s)	65, 413
GlaI	GCGC	2 cut(s)	30, 92
GluI	GCNGC	4 cut(s)	127, 370, 427, 493
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	2 cut(s)	73, 349
HhaI	GCGC	2 cut(s)	31, 93
Hin1I	GRCGYC	2 cut(s)	117, 360
Hin1II	CATG	3 cut(s)	55, 275, 466
Hin6I	GCGC	2 cut(s)	29, 91
HinP1I	GCGC	2 cut(s)	29, 91
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	11, 58, 78, 172
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	6, 245
Hpy188I	TCNGA	2 cut(s)	77, 473
Hpy188III	TCNNGA	2 cut(s)	148, 384
Hpy8I	GTNNAC	2 cut(s)	6, 245
Hpy99I	CGWCG	3 cut(s)	10, 119, 143
HpyAV	CCTTC	4 cut(s)	350, 433, 442, 536
HpyCH4III	ACNGT	2 cut(s)	262, 379
HpyCH4IV	ACGT	2 cut(s)	117, 138
HpyCH4V	TGCA	4 cut(s)	308, 429, 457, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 366
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	2 cut(s)	117, 138
Hsp92I	GRCGYC	2 cut(s)	117, 360
Hsp92II	CATG	3 cut(s)	55, 275, 466
HspAI	GCGC	2 cut(s)	29, 91
Kzo9I	GATC	2 cut(s)	130, 214
LpnPI	CCDG	7 cut(s)	39, 213, 253, 408, 516, 521, 543
Lsp1109I	GCAGC	2 cut(s)	138, 413
LweI	GCATC	2 cut(s)	295, 438
MaeI	CTAG	2 cut(s)	65, 413
MaeII	ACGT	2 cut(s)	117, 138
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	2 cut(s)	132, 216
MboI	GATC	2 cut(s)	130, 214
MboII	GAAGA	5 cut(s)	62, 181, 224, 355, 431
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	2 cut(s)	180, 311
MlyI	GAGTC	2 cut(s)	5, 166
MnlI	CCTC	3 cut(s)	328, 479, 490
MseI	TTAA	3 cut(s)	99, 183, 195
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	3 cut(s)	84, 93, 114
MwoI	GCNNNNNNNGC	2 cut(s)	90, 366
NdeII	GATC	2 cut(s)	130, 214
NlaIII	CATG	3 cut(s)	55, 275, 466
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	466
PciI	ACATGT	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 492
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	58, 78
PkrI	GCNGC	4 cut(s)	128, 371, 428, 494
PleI	GAGTC	2 cut(s)	5, 166
PpsI	GAGTC	2 cut(s)	5, 166
PscI	ACATGT	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	99, 183, 195
SatI	GCNGC	4 cut(s)	127, 370, 427, 493
Sau3AI	GATC	2 cut(s)	130, 214
SchI	GAGTC	2 cut(s)	5, 166
ScrFI	CCNGG	1 cut(s)	531
SfaNI	GCATC	2 cut(s)	295, 438
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	180, 311
SsiI	CCGC	6 cut(s)	36, 82, 93, 112, 369, 492
SspMI	CTAG	2 cut(s)	65, 413
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	262, 379
TaiI	ACGT	2 cut(s)	120, 141
TaqI	TCGA	4 cut(s)	5, 383, 486, 501
TasI	AATT	2 cut(s)	180, 311
TauI	GCSGC	2 cut(s)	372, 495
TfiI	GAWTC	2 cut(s)	58, 78
Tru1I	TTAA	3 cut(s)	99, 183, 195
Tru9I	TTAA	3 cut(s)	99, 183, 195
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	126, 426
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	225, 362
TspGWI	ACGGA	2 cut(s)	23, 110
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmiI	GTMKAC	2 cut(s)	5, 244
XspI	CTAG	2 cut(s)	65, 413
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.