Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012737

Physical Location & Seq

Genomic Coordinates Reverse (-)

67708659 .. 67709864

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCAGACTCACCTGGTGGTGGTAAGCACCAAGGAGGGTCAAAGTCGGCAGCGTCTCTCATGGAGAATTTGCTCGGTCTTCTCCGCATACGCGTCAAGCGCGGCGTTAACCTGGCCGTCCGCGACGTCCGTAGCAGCGATCCCTACATCGTCATCAAGATGGGTAAACAGAAACTGAAGACTCGTGTGATTAAAAAGGATGTTAATCCGGAGTGGAATGAAGATCTTACTCTTTCTGTTACTGACCCTTCTATTCCAGTCAAGCTGACTGTGTATGATCATGATACATTCAGCAAGGACGACAAAATGGGAGATGCAGAGTTTGGCATAGTACCTTATATTGAGGCATTGAAGATGGACTATGAAGGAATCCCAAGCGGAACGATTATCACAAGAGTACAACCCTGCAGGCAAAACTGCCTATCTGAAGAGAGCAGCATCCGCTGGAGCGAAGGTAAGGTCGTCCAAGATCTCTGCCTCAGACTGAGAAATGTAGAATGCGGTGAAGTTGAAATCCAGTTGCAATGGATCGATCTTCCTGGTTCCAAGGGCTTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

187

Amino Acids

20.66

Weight (kDa)

6.74

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	26 - 110	7.6e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17980
fragaria_vesca	FvH4_5g17320 FvH4_5g17320
malus_domestica	MD14G1236400.v1.1
prunus_persica	Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1
pyrus_communis	pycom14g19740
rosa_chinensis	RchiOBHm_Chr7g0178451
rosa_laevigata	RLG00000005447
rosa_multiflora	Rmu_sc0017248.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274910
rosa_rugosa	Rorug06G0417100
rosa_samantha	Rh7AG015600 Rh7CG015900 Rh7DG015500
rosa_wichuraiana	Rw0G010160 Rw7G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	3 cut(s)	93, 102, 123
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	6 cut(s)	85, 102, 121, 378, 442, 501
AclWI	GGATC	2 cut(s)	134, 536
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	197, 447
AcyI	GRCGYC	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	2 cut(s)	333, 399
AfiI	CCNNNNNNNGG	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	352, 512
AjnI	CCWGG	3 cut(s)	13, 111, 538
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	134, 536
AlwNI	CAGNNNCTG	1 cut(s)	175
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	3 cut(s)	50, 135, 435
ApoI	RAATTY	1 cut(s)	67
ArsI	GACNNNNNNTTYG	2 cut(s)	444, 476
AspLEI	GCGC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	3, 515
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	71, 185
BbvI	GCAGC	3 cut(s)	62, 147, 447
BccI	CCATC	2 cut(s)	154, 349
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	3 cut(s)	15, 113, 540
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	406
BglII	AGATCT	2 cut(s)	223, 469
BisI	GCNGC	4 cut(s)	51, 103, 136, 436
BlsI	GCNGC	4 cut(s)	52, 104, 137, 437
Bme1390I	CCNGG	3 cut(s)	15, 113, 540
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	3 cut(s)	15, 113, 540
BmsI	GCATC	2 cut(s)	304, 447
BpiI	GAAGAC	2 cut(s)	71, 185
BpmI	CTGGAG	1 cut(s)	466
Bsa29I	ATCGAT	1 cut(s)	531
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	31, 546
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	257, 517
Bse3DI	GCAATG	1 cut(s)	530
Bse8I	GATNNNNATC	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	3 cut(s)	15, 113, 540
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	31, 546
BseGI	GGATG	2 cut(s)	205, 438
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	2 cut(s)	476, 493
BseNI	ACTGG	2 cut(s)	257, 517
BseXI	GCAGC	3 cut(s)	62, 147, 447
Bsh1236I	CGCG	3 cut(s)	93, 102, 123
BshFI	GGCC	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	6 cut(s)	139, 223, 277, 469, 528, 532
BspACI	CCGC	6 cut(s)	85, 102, 121, 378, 442, 501
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	477, 492
BspDI	ATCGAT	1 cut(s)	531
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	3 cut(s)	93, 102, 123
BspHI	TCATGA	2 cut(s)	280, 557
BspLI	GGNNCC	1 cut(s)	544
BspMAI	CTGCAG	1 cut(s)	410
BspPI	GGATC	2 cut(s)	134, 536
BsrDI	GCAATG	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	257, 517
BssECI	CCNNGG	2 cut(s)	31, 546
BssMI	GATC	6 cut(s)	139, 223, 277, 469, 528, 532
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	31, 546
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	15, 113, 540
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	479, 485
BstF5I	GGATG	2 cut(s)	205, 438
BstFNI	CGCG	3 cut(s)	93, 102, 123
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	6 cut(s)	142, 226, 280, 472, 531, 535
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	6 cut(s)	139, 223, 277, 469, 528, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 441
BstNI	CCWGG	3 cut(s)	15, 113, 540
BstSCI	CCNGG	3 cut(s)	13, 111, 538
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	3 cut(s)	93, 102, 123
BstV1I	GCAGC	3 cut(s)	62, 147, 447
BstV2I	GAAGAC	2 cut(s)	71, 185
BstX2I	RGATCY	2 cut(s)	223, 469
BstYI	RGATCY	2 cut(s)	223, 469
Bsu15I	ATCGAT	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	205, 438
Cac8I	GCNNGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	175
CciI	TCATGA	2 cut(s)	280, 557
CfoI	GCGC	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	531
CseI	GACGC	2 cut(s)	42, 82
CsiI	ACCWGGT	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	332, 398
CviAII	CATG	3 cut(s)	61, 281, 558
CviJI	RGCY	3 cut(s)	116, 265, 552
CviKI_1	RGCY	3 cut(s)	116, 265, 552
CviQI	GTAC	2 cut(s)	332, 398
DdeI	CTNAG	2 cut(s)	479, 485
DpnI	GATC	6 cut(s)	141, 225, 279, 471, 530, 534
DpnII	GATC	6 cut(s)	139, 223, 277, 469, 528, 532
DraIII	CACNNNGTG	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	31, 546
Eco57I	CTGAAG	2 cut(s)	197, 447
EcoRII	CCWGG	3 cut(s)	13, 111, 538
EcoT14I	CCWWGG	2 cut(s)	31, 546
ErhI	CCWWGG	2 cut(s)	31, 546
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	3 cut(s)	64, 284, 561
FaiI	YATR	8 cut(s)	62, 89, 276, 282, 329, 339, 363, 559
FatI	CATG	3 cut(s)	60, 280, 557
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	51, 103, 136, 436
FokI	GGATG	2 cut(s)	212, 425
Fsp4HI	GCNGC	4 cut(s)	51, 103, 136, 436
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	4 cut(s)	51, 103, 136, 436
GsuI	CTGGAG	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	2 cut(s)	42, 82
HhaI	GCGC	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	64, 284, 561
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	8, 181, 369
HpaI	GTTAAC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	3, 515
Hpy166II	GTNNAC	2 cut(s)	109, 167
Hpy188I	TCNGA	2 cut(s)	427, 482
Hpy188III	TCNNGA	4 cut(s)	157, 209, 281, 558
Hpy8I	GTNNAC	2 cut(s)	109, 167
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	258, 359, 446
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	317, 408, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 441
HpyF3I	CTNAG	2 cut(s)	479, 485
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	64, 284, 561
HspAI	GCGC	1 cut(s)	100
Kpn2I	TCCGGA	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	6 cut(s)	139, 223, 277, 469, 528, 532
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	3 cut(s)	62, 147, 447
LweI	GCATC	2 cut(s)	304, 447
MabI	ACCWGGT	1 cut(s)	13
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	6 cut(s)	141, 225, 279, 471, 530, 534
MboI	GATC	6 cut(s)	139, 223, 277, 469, 528, 532
MboII	GAAGA	6 cut(s)	71, 190, 233, 364, 440, 527
MflI	RGATCY	2 cut(s)	223, 469
MluCI	AATT	1 cut(s)	67
MluI	ACGCGT	1 cut(s)	91
MlyI	GAGTC	2 cut(s)	2, 175
MnlI	CCTC	3 cut(s)	29, 337, 488
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	3 cut(s)	108, 192, 204
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	3 cut(s)	15, 113, 540
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	3 cut(s)	15, 113, 540
MvnI	CGCG	3 cut(s)	93, 102, 123
MwoI	GCNNNNNNNGC	2 cut(s)	99, 441
NdeII	GATC	6 cut(s)	139, 223, 277, 469, 528, 532
NlaIII	CATG	3 cut(s)	64, 284, 561
NlaIV	GGNNCC	1 cut(s)	544
PagI	TCATGA	2 cut(s)	280, 557
PctI	GAATGC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	369
PkrI	GCNGC	4 cut(s)	52, 104, 137, 437
PleI	GAGTC	2 cut(s)	2, 175
PpsI	GAGTC	2 cut(s)	2, 175
Psp6I	CCWGG	3 cut(s)	13, 111, 538
PspGI	CCWGG	3 cut(s)	13, 111, 538
PspN4I	GGNNCC	1 cut(s)	544
PstI	CTGCAG	1 cut(s)	410
PstNI	CAGNNNCTG	1 cut(s)	175
PsuI	RGATCY	2 cut(s)	223, 469
RsaI	GTAC	2 cut(s)	333, 399
RsaNI	GTAC	2 cut(s)	332, 398
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	108, 192, 204
SatI	GCNGC	4 cut(s)	51, 103, 136, 436
Sau3AI	GATC	6 cut(s)	139, 223, 277, 469, 528, 532
SbfI	CCTGCAGG	1 cut(s)	410
SchI	GAGTC	2 cut(s)	2, 175
ScrFI	CCNGG	3 cut(s)	15, 113, 540
SdaI	CCTGCAGG	1 cut(s)	410
SetI	ASST	7 cut(s)	16, 114, 129, 267, 337, 457, 462
SexAI	ACCWGGT	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	304, 447
SfcI	CTRYAG	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse8387I	CCTGCAGG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	6 cut(s)	85, 102, 121, 378, 442, 501
StyD4I	CCNGG	3 cut(s)	13, 111, 538
StyI	CCWWGG	2 cut(s)	31, 546
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	531
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	67
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	3 cut(s)	108, 192, 204
Tru9I	TTAA	3 cut(s)	108, 192, 204
TseI	GCWGC	3 cut(s)	50, 135, 435
TspDTI	ATGAA	2 cut(s)	234, 378
TspGWI	ACGGA	1 cut(s)	119
XapI	RAATTY	1 cut(s)	67
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.