AT3G21640

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020159
Physical Location & Seq
Reverse (-)
7618851 .. 7621477
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21640.1

Sequence Viewer

Length: 1098 bp
ATGGATGAATCTCTGGAGCATCAAACTCAAACACATGACCAAGAGAGCGAAATAGTTACTGAAGGAAGTGCCGTTGTGCATAGTGAGCCATCTCAAGAGGGTAATGTTCCTCCTAAAGTTGATAGTGAAGCTGAGGTCTTGGATGAGAAAGTCAGTAAGCAGATTATAAAGGAAGGTCACGGTTCCAAACCATCCAAGTACTCTACATGCTTTTTGCACTACAGGGCATGGACCAAAAACTCGCAGCACAAATTTGAGGATACATGGCATGAGCAGCAACCTATTGAATTGGTTCTTGGAAAAGAGAAAAAAGAACTAGCCGGTTTAGCCATCGGTGTTGCTAGCATGAAGTCTGGTGAACGTGCGCTTGTGCATGTTGGCTGGGAATTAGCTTATGGGAAAGAAGGAAACTTTTCTTTTCCGAATGTTCCACCTATGGCAGACTTGTTATATGAGGTGGAAGTTATTGGGTTTGATGAAACAAAGGAGGGAAAAGCTCGCAGTGATATGACTGTAGAGGAAAGGATTGGTGCAGCAGACAGAAGAAAAATGGATGGGAATTCTCTTTTTAAGGAGGAGAAACTGGAGGAAGCCATGCAACAGTATGAAATGGCCATAGCATACATGGGGGACGATTTTATGTTTCAGCTGTATGGGAAGTACCAGGATATGGCTTTAGCAGTTAAAAACCCATGCCATCTTAACATAGCAGCTTGCCTCATCAAACTAAAACGATACGATGAAGCAATTGGTCACTGCAACATTGTGTTGACAGAAGAAGAGAAAAACCCAAAAGCACTGTTCAGAAGAGGGAAAGCAAAGGCAGAGCTAGGACAGATGGACTCAGCACGTGATGATTTCCGAAAGGCACAAAAGTATGCTCCTGACGACAAGGCGATTAGAAGAGAGCTACGAGCACTTGCAGAGCAAGAGAAAGCCTTGTACCAAAAGCAGAAAGAAATGTACAAAGGAATATTCAAAGGGAAAGATGAAGGTGGTGCTAAGTCAAAGAGCCTTTTTTGGTTGATAGTGTTATGGCAATGGTTTGTTTCCCTTTTCTCCCGTATCTTTCGACGCCACAGAGTTAAAGCAGATTAA

Protein Analysis

365

Amino Acids

41.81

Weight (kDa)

6.18

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 63 - 156 2.7e-17 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21640
malus_domestica MD02G1308400.v1.1 MD07G1017200.v1.1
pyrus_communis pycom02g25970 pycom07g01120
rosa_samantha Rh5BG177700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 670
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 2 cut(s) 251, 559
AcuI CTGAAG 1 cut(s) 81
AcvI CACGTG 1 cut(s) 851
AcyI GRCGYC 1 cut(s) 1075
AfaI GTAC 4 cut(s) 200, 662, 944, 965
AfiI CCNNNNNNNGG 1 cut(s) 670
AgsI TTSAA 2 cut(s) 287, 979
AjnI CCWGG 1 cut(s) 663
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 7 cut(s) 131, 392, 497, 649, 713, 829, 910
AluI AGCT 7 cut(s) 131, 392, 497, 649, 713, 829, 910
Alw21I GWGCWC 1 cut(s) 919
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 4 cut(s) 244, 274, 533, 710
ApoI RAATTY 2 cut(s) 251, 559
Asp700I GAANNNNTTC 2 cut(s) 291, 412
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 368
AsuNHI GCTAGC 1 cut(s) 341
AvaII GGWCC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 614
BbrPI CACGTG 1 cut(s) 851
Bbv12I GWGCWC 1 cut(s) 919
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 256, 286, 545, 722
BccI CCATC 6 cut(s) 97, 199, 338, 548, 705, 832
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 665
BciVI GTATCC 1 cut(s) 253
BfaI CTAG 3 cut(s) 317, 342, 830
BfmI CTRYAG 2 cut(s) 220, 513
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 4 cut(s) 245, 275, 534, 711
BlsI GCNGC 4 cut(s) 246, 276, 535, 712
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 665
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 665
BmsI GCATC 1 cut(s) 28
BmtI GCTAGC 1 cut(s) 345
BpmI CTGGAG 2 cut(s) 35, 605
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 851
BsaHI GRCGYC 1 cut(s) 1075
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 1046
BseBI CCWGG 1 cut(s) 665
BseGI GGATG 4 cut(s) 10, 148, 191, 559
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 1046
BseMII CTCAG 2 cut(s) 123, 858
BseNI ACTGG 1 cut(s) 588
BseRI GAGGAG 1 cut(s) 590
BseXI GCAGC 4 cut(s) 256, 286, 545, 722
BseYI CCCAGC 1 cut(s) 381
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 919
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 1 cut(s) 670
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 1 cut(s) 614
Bsp1286I GDGCHC 1 cut(s) 919
Bsp1407I TGTACA 1 cut(s) 963
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 124, 857
BspLI GGNNCC 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 1046
BsrFI RCCGGY 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 1 cut(s) 588
BssAI RCCGGY 1 cut(s) 320
BssNI GRCGYC 1 cut(s) 1075
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 4 cut(s) 182, 514, 603, 801
Bst6I CTCTTC 3 cut(s) 774, 802, 898
BstACI GRCGYC 1 cut(s) 1075
BstAUI TGTACA 1 cut(s) 963
BstBAI YACGTR 1 cut(s) 851
BstC8I GCNNGC 3 cut(s) 343, 499, 715
BstDEI CTNAG 3 cut(s) 132, 844, 1002
BstF5I GGATG 4 cut(s) 10, 148, 191, 559
BstHHI GCGC 1 cut(s) 367
BstMWI GCNNNNNNNGC 3 cut(s) 85, 274, 326
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 2 cut(s) 210, 377
BstSCI CCNGG 1 cut(s) 663
BstSFI CTRYAG 2 cut(s) 220, 513
BstV1I GCAGC 4 cut(s) 256, 286, 545, 722
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 614
BtsCI GGATG 4 cut(s) 10, 148, 191, 559
BtsI GCAGTG 2 cut(s) 508, 754
BtsIMutI CAGTG 3 cut(s) 508, 754, 797
Cac8I GCNNGC 3 cut(s) 343, 499, 715
CfoI GCGC 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 1083
Csp6I GTAC 4 cut(s) 199, 661, 943, 964
CviQI GTAC 4 cut(s) 199, 661, 943, 964
DdeI CTNAG 3 cut(s) 132, 844, 1002
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 3 cut(s) 774, 802, 898
EarI CTCTTC 3 cut(s) 774, 802, 898
Eco47I GGWCC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 81
Eco72I CACGTG 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 663
FaqI GGGAC 1 cut(s) 644
Fnu4HI GCNGC 4 cut(s) 245, 275, 534, 711
FokI GGATG 4 cut(s) 17, 155, 178, 566
Fsp4HI GCNGC 4 cut(s) 245, 275, 534, 711
FspBI CTAG 3 cut(s) 317, 342, 830
GlaI GCGC 1 cut(s) 366
GluI GCNGC 4 cut(s) 245, 275, 534, 711
GsaI CCCAGC 1 cut(s) 385
GsuI CTGGAG 2 cut(s) 35, 605
HaeIII GGCC 1 cut(s) 614
HapII CCGG 1 cut(s) 321
HgaI GACGC 1 cut(s) 1083
HhaI GCGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 1075
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 1 cut(s) 771
HindII GTYRAC 1 cut(s) 771
HinfI GANTC 2 cut(s) 8, 842
HpaII CCGG 1 cut(s) 321
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 359, 771
Hpy188I TCNGA 3 cut(s) 423, 806, 863
Hpy188III TCNNGA 3 cut(s) 14, 95, 884
Hpy8I GTNNAC 2 cut(s) 359, 771
Hpy99I CGWCG 1 cut(s) 1077
HpyAV CCTTC 4 cut(s) 56, 167, 398, 986
HpyCH4III ACNGT 4 cut(s) 182, 514, 603, 801
HpyCH4IV ACGT 2 cut(s) 361, 850
HpyCH4V TGCA 7 cut(s) 79, 217, 373, 533, 598, 759, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 274, 326
HpyF3I CTNAG 3 cut(s) 132, 844, 1002
HpySE526I ACGT 2 cut(s) 361, 850
Hsp92I GRCGYC 1 cut(s) 1075
HspAI GCGC 1 cut(s) 365
LmnI GCTCC 2 cut(s) 16, 886
LpnPI CCDG 8 cut(s) 208, 334, 339, 367, 569, 650, 677, 897
Lsp1109I GCAGC 4 cut(s) 256, 286, 545, 722
LweI GCATC 1 cut(s) 28
MaeI CTAG 3 cut(s) 317, 342, 830
MaeII ACGT 2 cut(s) 361, 850
MaeIII GTNAC 3 cut(s) 55, 176, 752
MboII GAAGA 5 cut(s) 555, 788, 791, 819, 915
MfeI CAATTG 1 cut(s) 747
MhlI GDGCHC 1 cut(s) 919
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 5 cut(s) 251, 287, 386, 559, 747
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 1 cut(s) 836
Mox20I TGGCCA 1 cut(s) 614
MroXI GAANNNNTTC 2 cut(s) 291, 412
MscI TGGCCA 1 cut(s) 614
MseI TTAA 5 cut(s) 570, 684, 702, 1086, 1096
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 1 cut(s) 649
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 665
MunI CAATTG 1 cut(s) 747
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 3 cut(s) 85, 274, 326
NheI GCTAGC 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 176, 752
NspI RCATGY 2 cut(s) 210, 377
PdmI GAANNNNTTC 2 cut(s) 291, 412
PfeI GAWTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 4 cut(s) 246, 276, 535, 712
PleI GAGTC 1 cut(s) 836
PmaCI CACGTG 1 cut(s) 851
PmlI CACGTG 1 cut(s) 851
PpsI GAGTC 1 cut(s) 836
Ppu21I YACGTR 1 cut(s) 851
PsiI TTATAA 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 663
PspCI CACGTG 1 cut(s) 851
PspFI CCCAGC 1 cut(s) 381
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 649
RsaI GTAC 4 cut(s) 200, 662, 944, 965
RsaNI GTAC 4 cut(s) 199, 661, 943, 964
SaqAI TTAA 5 cut(s) 570, 684, 702, 1086, 1096
SatI GCNGC 4 cut(s) 245, 275, 534, 711
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 1 cut(s) 665
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 2 cut(s) 220, 513
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 5 cut(s) 251, 287, 386, 559, 747
SspI AATATT 1 cut(s) 975
SspMI CTAG 3 cut(s) 317, 342, 830
StyD4I CCNGG 1 cut(s) 663
TaaI ACNGT 4 cut(s) 182, 514, 603, 801
TaiI ACGT 2 cut(s) 364, 853
TaqI TCGA 1 cut(s) 1072
TasI AATT 5 cut(s) 251, 287, 386, 559, 747
TatI WGTACW 2 cut(s) 198, 963
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 5 cut(s) 570, 684, 702, 1086, 1096
Tru9I TTAA 5 cut(s) 570, 684, 702, 1086, 1096
TscAI CASTG 3 cut(s) 508, 761, 804
TseFI GTSAC 2 cut(s) 176, 752
TseI GCWGC 4 cut(s) 244, 274, 533, 710
Tsp45I GTSAC 2 cut(s) 176, 752
TspDTI ATGAA 6 cut(s) 21, 362, 492, 621, 756, 1005
TspRI CASTG 3 cut(s) 508, 761, 804
Van91I CCANNNNNTGG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 2 cut(s) 251, 559
XceI RCATGY 2 cut(s) 210, 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XmnI GAANNNNTTC 2 cut(s) 291, 412
XspI CTAG 3 cut(s) 317, 342, 830
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.