Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0020159

Physical Location & Seq

Genomic Coordinates Forward (+)

19268603 .. 19269513

Gene Structure 911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG177700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTGCACTACAGGGCATGGACTGAAAGCACACGGCATAAGTTTGAAGACACATGGGACGAACAACGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAACAAATGACTGGCTTGGTTATTGGTGTACCCAGCATGAAGGCTGGAGAACGTGCCCTATTACATGTAGGCTGGGAGTTGGGATACGGAAAAGAAGGAAACTTTTCTTTCCCAAATGTTCCACCCTCAGCAGATATATTGTATGAAGTTGAGCTTATTGGATTTGATGAGACCAAAGAAGGGAAAGCTCTTTGTGATATGACTGTGGAGGAGAGGATTGGAGCAGCAGATAGAAGAAAGATGGATGGAAATGCTTTATTTAAGGAGGAAAAACTGGAGGAGGCTATGCAACAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

132

Amino Acids

15.12

Weight (kDa)

5.04

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	2 - 86	4.2e-16	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21640
malus_domestica	MD02G1308400.v1.1 MD07G1017200.v1.1
pyrus_communis	pycom02g25970 pycom07g01120
rosa_samantha	Rh5BG177700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	47, 77
AluBI	AGCT	2 cut(s)	253, 287
AluI	AGCT	2 cut(s)	253, 287
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	263
Alw44I	GTGCAC	1 cut(s)	5
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	202
BaeGI	GKGCMC	2 cut(s)	9, 157
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	9
BbvCI	CCTCAGC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	2 cut(s)	334, 338
BceAI	ACGGC	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	2 cut(s)	165, 395
Bpu10I	CCTNAGC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	115, 378
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	115, 378
BseRI	GAGGAG	2 cut(s)	323, 392
BseSI	GKGCMC	2 cut(s)	9, 157
BseXI	GCAGC	1 cut(s)	335
BseYI	CCCAGC	2 cut(s)	131, 171
BsiHKAI	GWGCWC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	9, 157
BspCNI	CTCAG	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	115, 378
Bst4CI	ACNGT	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	349
BstMAI	GTCTC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	2 cut(s)	9, 157
BstV1I	GCAGC	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	4 cut(s)	18, 54, 136, 164
CviJI	RGCY	6 cut(s)	114, 143, 171, 253, 287, 383
CviKI_1	RGCY	6 cut(s)	114, 143, 171, 253, 287, 383
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	263
FaeI	CATG	4 cut(s)	21, 57, 139, 167
FaiI	YATR	9 cut(s)	19, 39, 55, 137, 165, 236, 243, 299, 386
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	17, 53, 135, 163
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	324
GsaI	CCCAGC	2 cut(s)	135, 175
GsuI	CTGGAG	2 cut(s)	165, 395
Hin1II	CATG	4 cut(s)	21, 57, 139, 167
Hpy166II	GTNNAC	2 cut(s)	7, 128
Hpy8I	GTNNAC	2 cut(s)	7, 128
HpyAV	CCTTC	3 cut(s)	133, 188, 272
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	7, 388
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	21, 57, 139, 167
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	5 cut(s)	96, 129, 145, 157, 359
Lsp1109I	GCAGC	1 cut(s)	335
MaeII	ACGT	1 cut(s)	151
MboII	GAAGA	2 cut(s)	59, 345
MhlI	GDGCHC	2 cut(s)	9, 157
MnlI	CCTC	6 cut(s)	235, 301, 306, 358, 370, 373
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	1 cut(s)	360
NlaIII	CATG	4 cut(s)	21, 57, 139, 167
NspI	RCATGY	1 cut(s)	167
PciI	ACATGT	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	163
PspFI	CCCAGC	2 cut(s)	131, 171
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	1 cut(s)	324
SduI	GDGCHC	2 cut(s)	9, 157
SetI	ASST	3 cut(s)	154, 255, 289
SfcI	CTRYAG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	152, 258
TspGWI	ACGGA	1 cut(s)	201
VneI	GTGCAC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.