Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0020159

Physical Location & Seq

Genomic Coordinates Reverse (-)

36375170 .. 36379069

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1308400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGGATGTTCGGGACCAGGAGCAGGCTGAGCAGCAAAGTCAACCACTTGGTCAAGATGGTGAAAGTGAAATAGTAACCGAAGATGCTACCCTTGTGCATGGGGAACCTTCTCAAGGTGCTAATGGCCCCCCAAAAGTTGATTCTAAGGTGGAAATCCTTCACGAGAAAGTCACAAAGCAAATCATTAAGGAAGGTCATGGTCAAATACCATCCAAGTATTCAACATGCTTCTTGCACTACAGGGCATGGACTGAAAGCACGGGACACAAGTTTGAAGACACATGGGATGAACAACGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAAGAAATGACTGGCTTGGCTATTGGGGTGTCAAGTATGAAGTCTGGAGAGCGTGCCCTATTACATGTAGGCTGGGAGTTAGGGTATGGGAAAGAAGGGAGCTTTTCTTTTCCAAATGTTCCACCATTGGCAGATATATCATATGAAGTTGAGCTTATTGGATTTGATGAAACCAAAGAAGGGAAAGCTCGTAGTGACATGACCGTGGAGGAAAGGATTGGAGCAGCAGATAGAAGAAAGATGGATGGAAATGATTTATTTAAAGAGGAAAAACTAGAGGAGGCAATGCAACAATATGAAATGGCCATAGCATATATGGGTGACGACTTCATGTTCCAGTTGTTTGGGAAGTACAGGGACATGGCTTTGGCTGTTAAAAATCCATGCCACCTTAACATGGCAGCGTCTTTTATAAAGCTCAAGCGCTATGAAGAAGCCATTGGACAGTGCAGTATTGTACTGGCAGAGGATGAAAACAATGTCAAAGCGCTATTTAGGCGAGGAAAAGCCAGAGCAGAGCTTGGGCAGACAGATGCTGCGCGGGAAGACTTTCTAAAGGCGCGCAAATTTGCACCTCAAGACAAAGCTATTGCAAGAGAGTTACGTCTGCTTGCTGAACACGACAAGGCTGTTTATCAGAAACAAAAAGAAATCTACAAGGGAATTTTTGGACCAACCCCAGAACCAAAACCCAAACGGAATAATCGGTTGATCATCTTTTGGCACTGGCTGTTGTCATTGTTCTATCGTCTCTTCAGGCTCGAAAGGCATAAGGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

371

Amino Acids

42.38

Weight (kDa)

5.82

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	71 - 163	1.6e-15	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21640
malus_domestica	MD02G1308400.v1.1 MD07G1017200.v1.1
pyrus_communis	pycom02g25970 pycom07g01120
rosa_samantha	Rh5BG177700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	743
AccII	CGCG	2 cut(s)	871, 892
AciI	CCGC	1 cut(s)	871
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	2 cut(s)	896, 993
AcuI	CTGAAG	1 cut(s)	1069
AfaI	GTAC	2 cut(s)	683, 789
AfeI	AGCGCT	2 cut(s)	755, 819
AfiI	CCNNNNNNNGG	4 cut(s)	25, 116, 510, 727
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	225, 278, 308
AjnI	CCWGG	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	4 cut(s)	127, 159, 753, 785
AluBI	AGCT	6 cut(s)	432, 484, 518, 748, 850, 917
AluI	AGCT	6 cut(s)	432, 484, 518, 748, 850, 917
Alw26I	GTCTC	1 cut(s)	1085
AlwNI	CAGNNNCTG	1 cut(s)	866
Aor51HI	AGCGCT	2 cut(s)	755, 819
AoxI	GGCC	2 cut(s)	127, 633
ApeKI	GCWGC	4 cut(s)	34, 554, 731, 866
ApoI	RAATTY	2 cut(s)	896, 993
Asp700I	GAANNNNTTC	2 cut(s)	159, 879
AspLEI	GCGC	5 cut(s)	756, 820, 871, 892, 894
AspS9I	GGNCC	3 cut(s)	16, 128, 1001
AsuHPI	GGTGA	2 cut(s)	74, 662
AvaII	GGWCC	2 cut(s)	16, 1001
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	635
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	2 cut(s)	285, 882
BbvI	GCAGC	4 cut(s)	46, 566, 743, 853
BccI	CCATC	4 cut(s)	53, 220, 565, 569
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	1041
BcoDI	GTCTC	1 cut(s)	1085
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	2 cut(s)	757, 821
BisI	GCNGC	4 cut(s)	35, 555, 732, 867
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	4 cut(s)	36, 556, 733, 868
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	2 cut(s)	16, 1001
BmgT120I	GGNCC	3 cut(s)	16, 128, 1001
BmiI	GGNNCC	3 cut(s)	17, 108, 130
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	76, 853
BpiI	GAAGAC	2 cut(s)	285, 882
BpmI	CTGGAG	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	3 cut(s)	99, 734, 891
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 116, 510, 727
Bse1I	ACTGG	4 cut(s)	346, 667, 795, 1061
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	5 cut(s)	13, 212, 295, 580, 805
BseLI	CCNNNNNNNGG	4 cut(s)	25, 116, 510, 727
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	21, 1098
BseNI	ACTGG	4 cut(s)	346, 667, 795, 1061
BsePI	GCGCGC	1 cut(s)	890
BseRI	GAGGAG	1 cut(s)	623
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	4 cut(s)	46, 566, 743, 853
BseYI	CCCAGC	1 cut(s)	402
BsgI	GTGCAG	1 cut(s)	799
Bsh1236I	CGCG	2 cut(s)	871, 892
BshFI	GGCC	2 cut(s)	129, 635
BslFI	GGGAC	3 cut(s)	29, 279, 701
BslI	CCNNNNNNNGG	4 cut(s)	25, 116, 510, 727
BsmAI	GTCTC	1 cut(s)	1085
BsmBI	CGTCTC	1 cut(s)	1085
BsmFI	GGGAC	3 cut(s)	29, 279, 701
BsnI	GGCC	2 cut(s)	129, 635
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	1 cut(s)	1041
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	871
BspANI	GGCC	2 cut(s)	129, 635
BspCNI	CTCAG	2 cut(s)	22, 1099
BspFNI	CGCG	2 cut(s)	871, 892
BspLI	GGNNCC	3 cut(s)	17, 108, 130
BsrDI	GCAATG	1 cut(s)	621
BsrI	ACTGG	4 cut(s)	346, 667, 795, 1061
BssECI	CCNNGG	1 cut(s)	534
BssHII	GCGCGC	1 cut(s)	890
BssMI	GATC	1 cut(s)	1041
BssSI	CACGAG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	535, 777
Bst6I	CTCTTC	1 cut(s)	1088
BstC8I	GCNNGC	4 cut(s)	27, 384, 892, 942
BstDEI	CTNAG	3 cut(s)	30, 147, 1107
BstDSI	CCRYGG	1 cut(s)	534
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	5 cut(s)	13, 212, 295, 580, 805
BstFNI	CGCG	2 cut(s)	871, 892
BstH2I	RGCGCY	2 cut(s)	757, 821
BstHHI	GCGC	5 cut(s)	756, 820, 871, 892, 894
BstKTI	GATC	1 cut(s)	1044
BstMAI	GTCTC	1 cut(s)	1085
BstMBI	GATC	1 cut(s)	1041
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 826, 1096
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	2 cut(s)	231, 398
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	2 cut(s)	871, 892
BstV1I	GCAGC	4 cut(s)	46, 566, 743, 853
BstV2I	GAAGAC	2 cut(s)	285, 882
BstXI	CCANNNNNNTGG	1 cut(s)	674
BsuRI	GGCC	2 cut(s)	129, 635
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	5 cut(s)	13, 212, 295, 580, 805
BtsIMutI	CAGTG	2 cut(s)	782, 1054
Cac8I	GCNNGC	4 cut(s)	27, 384, 892, 942
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	5 cut(s)	756, 820, 871, 892, 894
Cfr13I	GGNCC	3 cut(s)	16, 128, 1001
CseI	GACGC	1 cut(s)	723
Csp6I	GTAC	2 cut(s)	682, 788
CviQI	GTAC	2 cut(s)	682, 788
DdeI	CTNAG	3 cut(s)	30, 147, 1107
DpnI	GATC	1 cut(s)	1043
DpnII	GATC	1 cut(s)	1041
DraI	TTTAAA	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	1088
EarI	CTCTTC	1 cut(s)	1088
Eco47I	GGWCC	2 cut(s)	16, 1001
Eco47III	AGCGCT	2 cut(s)	755, 819
Eco57I	CTGAAG	1 cut(s)	1069
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	1085
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	3 cut(s)	29, 279, 701
FauI	CCCGC	1 cut(s)	864
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	1041
Fnu4HI	GCNGC	4 cut(s)	35, 555, 732, 867
FokI	GGATG	5 cut(s)	20, 199, 302, 587, 812
Fsp4HI	GCNGC	4 cut(s)	35, 555, 732, 867
FspBI	CTAG	1 cut(s)	605
GlaI	GCGC	5 cut(s)	755, 819, 870, 891, 893
GluI	GCNGC	4 cut(s)	35, 555, 732, 867
GsaI	CCCAGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	2 cut(s)	757, 821
HaeIII	GGCC	2 cut(s)	129, 635
HgaI	GACGC	1 cut(s)	723
HhaI	GCGC	5 cut(s)	756, 820, 871, 892, 894
Hin6I	GCGC	5 cut(s)	754, 818, 869, 890, 892
HinP1I	GCGC	5 cut(s)	754, 818, 869, 890, 892
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	2 cut(s)	74, 662
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	969
Hpy188III	TCNNGA	5 cut(s)	14, 56, 164, 375, 908
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	5 cut(s)	120, 170, 188, 419, 503
HpyCH4III	ACNGT	2 cut(s)	535, 777
HpyCH4IV	ACGT	1 cut(s)	934
HpyCH4V	TGCA	6 cut(s)	100, 238, 619, 780, 902, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 826, 1096
HpyF3I	CTNAG	3 cut(s)	30, 147, 1107
HpySE526I	ACGT	1 cut(s)	934
HspAI	GCGC	5 cut(s)	754, 818, 869, 890, 892
Ksp22I	TGATCA	1 cut(s)	1041
Kzo9I	GATC	1 cut(s)	1041
LmnI	GCTCC	3 cut(s)	22, 429, 551
Lsp1109I	GCAGC	4 cut(s)	46, 566, 743, 853
LweI	GCATC	2 cut(s)	76, 853
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	934
MaeIII	GTNAC	5 cut(s)	76, 172, 524, 650, 930
MalI	GATC	1 cut(s)	1043
MboI	GATC	1 cut(s)	1041
MboII	GAAGA	6 cut(s)	95, 290, 576, 773, 887, 1075
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	2 cut(s)	896, 993
MluNI	TGGCCA	1 cut(s)	635
MnlI	CCTC	7 cut(s)	532, 589, 601, 604, 790, 824, 915
Mox20I	TGGCCA	1 cut(s)	635
MroXI	GAANNNNTTC	2 cut(s)	159, 879
MscI	TGGCCA	1 cut(s)	635
MseI	TTAA	4 cut(s)	189, 591, 705, 723
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	2 cut(s)	871, 892
MwoI	GCNNNNNNNGC	3 cut(s)	31, 826, 1096
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	1 cut(s)	1041
NlaIV	GGNNCC	3 cut(s)	17, 108, 130
NmuCI	GTSAC	3 cut(s)	172, 524, 650
NspI	RCATGY	2 cut(s)	231, 398
PauI	GCGCGC	1 cut(s)	890
PciI	ACATGT	1 cut(s)	394
PdmI	GAANNNNTTC	2 cut(s)	159, 879
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	36, 556, 733, 868
PscI	ACATGT	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	17, 108, 130
PspPI	GGNCC	3 cut(s)	16, 128, 1001
PstNI	CAGNNNCTG	1 cut(s)	866
PteI	GCGCGC	1 cut(s)	890
RsaI	GTAC	2 cut(s)	683, 789
RsaNI	GTAC	2 cut(s)	682, 788
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	4 cut(s)	189, 591, 705, 723
SatI	GCNGC	4 cut(s)	35, 555, 732, 867
Sau3AI	GATC	1 cut(s)	1041
Sau96I	GGNCC	3 cut(s)	16, 128, 1001
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	2 cut(s)	76, 853
SfcI	CTRYAG	1 cut(s)	241
SinI	GGWCC	2 cut(s)	16, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	3 cut(s)	114, 749, 906
SmoI	CTYRAG	3 cut(s)	114, 749, 906
Sse9I	AATT	2 cut(s)	896, 993
SsiI	CCGC	1 cut(s)	871
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	535, 777
TaiI	ACGT	1 cut(s)	937
TaqI	TCGA	1 cut(s)	1092
TasI	AATT	2 cut(s)	896, 993
TatI	WGTACW	2 cut(s)	681, 787
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	4 cut(s)	189, 591, 705, 723
Tru9I	TTAA	4 cut(s)	189, 591, 705, 723
TscAI	CASTG	2 cut(s)	782, 1061
TseFI	GTSAC	3 cut(s)	172, 524, 650
TseI	GCWGC	4 cut(s)	34, 554, 731, 866
Tsp45I	GTSAC	3 cut(s)	172, 524, 650
TspDTI	ATGAA	8 cut(s)	306, 383, 489, 513, 642, 649, 774, 816
TspGWI	ACGGA	1 cut(s)	1042
TspRI	CASTG	2 cut(s)	782, 1061
VpaK11BI	GGWCC	2 cut(s)	16, 1001
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	2 cut(s)	896, 993
XceI	RCATGY	2 cut(s)	231, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmnI	GAANNNNTTC	2 cut(s)	159, 879
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.