Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0020159

Physical Location & Seq

Genomic Coordinates Reverse (-)

23847649 .. 23850851

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGGATGTTCGGGATCAGGAGCAGGCTAAGGCTGAGCAGCAAAGTCAACCACTTGGTCAAGATGGTGAAAGTGAAATAGTAACCGAAGGTGCTACCTTTGTGCATGGGGAACCTTCTCAAGATGCTAATGGCCCCCCAAAAGTTGATTCTAAGGTGGAAATCCTTCACGAGAAAGTCACAAAGCAAATCATTAAGGAAGGTCATGGTCAAATACCATCCAAGTATTCAACATGCTTCTTGCACTACAGGGCATGGACTGAAAGCACGGGACACAAGTTCGAAGATACAAGGGATGAACAACGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAAGAAATGACTGGCTTGGCTATTGGGGTGTCCAGCATGAAGTCTGGAGAGCGTGCCCTATTACATGTGGGCTGGGAGTTAGGGTATGGGAAAGAAGGGAGCTTTTCTTTTCCGAATGTCCCACCATTGGCAAATATATCATATGAAGTTGAGCTTATTGGATTTGATGAAACCAAAGAAGGGAAAGCTCGTGGTGACATGACTGTGGAGGAAAGGATTGGAGCAGCAGATAGAAGAAAAATGGATGGAAATGCTTTATTTAAAGAGGAAAAACTGGAGGAGGCAATGCAACAGTATGAAATGGCCATAGCATATATGGGTGACGACTTCATGTTCCAGTTGTTTGGGAAGTACAGGGACATGGCTTTGGCTGTTAAAAATCCATGCCACCTTAACATGGCTGCGTCTTTTATAAAGCTCAAGCGCTATGAAGATGCCATTGGACAGTGCAGTATTGTACTAGCCGAGGATGAAAACAACGTCAAGGCGCTATTTAGGCGAGGAAAAGCCAGAGCAGAGCTTGGGCAGACAGATGCTGCTCGGGAAGACTTTCTAAAGGCGCGCAAATTTGCACCTCAAGACAAAGCTATTGCAAGAGAGTTACGTCTGCTTGCTGAACACGACAAGGCTGTTTATCAGAAACAAAAAGAAATCTACAAGGGAATTTTTGGACCAACCCCAGAGCCAAAACCCAAACGGAATAATCGGTTGATCATCTTTTGGCACTGGCTATTGTCATTGTTCTATCGTCTCTTCAGGCGCGAAAGGCATAAGGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

373

Amino Acids

42.54

Weight (kDa)

6.42

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21640
malus_domestica	MD02G1308400.v1.1 MD07G1017200.v1.1
pyrus_communis	pycom02g25970 pycom07g01120
rosa_samantha	Rh5BG177700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AccII	CGCG	2 cut(s)	898, 1098
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	2 cut(s)	902, 999
AcuI	CTGAAG	1 cut(s)	1075
AfaI	GTAC	2 cut(s)	689, 795
AfeI	AGCGCT	1 cut(s)	761
AfiI	CCNNNNNNNGG	3 cut(s)	463, 516, 733
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	2 cut(s)	231, 314
AjuI	GAANNNNNNNTTGG	4 cut(s)	133, 165, 759, 791
AluBI	AGCT	6 cut(s)	438, 490, 524, 754, 856, 923
AluI	AGCT	6 cut(s)	438, 490, 524, 754, 856, 923
Alw26I	GTCTC	1 cut(s)	1091
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	876
Aor51HI	AGCGCT	1 cut(s)	761
AoxI	GGCC	2 cut(s)	133, 639
ApeKI	GCWGC	4 cut(s)	40, 560, 737, 872
ApoI	RAATTY	2 cut(s)	902, 999
Asp700I	GAANNNNTTC	2 cut(s)	165, 885
AspLEI	GCGC	5 cut(s)	762, 826, 898, 900, 1098
AspS9I	GGNCC	2 cut(s)	134, 1007
AsuHPI	GGTGA	3 cut(s)	80, 542, 668
AsuII	TTCGAA	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	876
AvaII	GGWCC	1 cut(s)	1007
BaeGI	GKGCMC	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	641
BauI	CACGAG	2 cut(s)	170, 525
BbsI	GAAGAC	1 cut(s)	888
BbvI	GCAGC	4 cut(s)	52, 572, 724, 859
BccI	CCATC	3 cut(s)	59, 226, 575
BclI	TGATCA	1 cut(s)	1047
BcoDI	GTCTC	1 cut(s)	1091
BfaI	CTAG	1 cut(s)	797
BfmI	CTRYAG	1 cut(s)	247
BfoI	RGCGCY	2 cut(s)	763, 827
BisI	GCNGC	4 cut(s)	41, 561, 738, 873
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	4 cut(s)	42, 562, 739, 874
Bme18I	GGWCC	1 cut(s)	1007
BmeT110I	CYCGRG	1 cut(s)	876
BmgT120I	GGNCC	2 cut(s)	134, 1007
BmiI	GGNNCC	2 cut(s)	114, 136
BmsI	GCATC	3 cut(s)	115, 760, 859
BpiI	GAAGAC	1 cut(s)	888
BpmI	CTGGAG	2 cut(s)	402, 632
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	282
BpuEI	CTTGAG	3 cut(s)	105, 740, 897
BsaJI	CCNNGG	1 cut(s)	801
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	463, 516, 733
Bse1I	ACTGG	4 cut(s)	352, 615, 673, 1067
Bse3DI	GCAATG	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	5 cut(s)	13, 218, 301, 586, 811
BseLI	CCNNNNNNNGG	3 cut(s)	463, 516, 733
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	27, 1104
BseNI	ACTGG	4 cut(s)	352, 615, 673, 1067
BsePI	GCGCGC	1 cut(s)	896
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	4 cut(s)	52, 572, 724, 859
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	805
Bsh1236I	CGCG	2 cut(s)	898, 1098
BshFI	GGCC	2 cut(s)	135, 641
BsiHKCI	CYCGRG	1 cut(s)	876
BslFI	GGGAC	3 cut(s)	285, 440, 707
BslI	CCNNNNNNNGG	3 cut(s)	463, 516, 733
BsmAI	GTCTC	1 cut(s)	1091
BsmBI	CGTCTC	1 cut(s)	1091
BsmFI	GGGAC	3 cut(s)	285, 440, 707
BsnI	GGCC	2 cut(s)	135, 641
BsoBI	CYCGRG	1 cut(s)	876
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	16, 1047
Bsp1720I	GCTNAGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	135, 641
BspCNI	CTCAG	2 cut(s)	28, 1105
BspFNI	CGCG	2 cut(s)	898, 1098
BspLI	GGNNCC	2 cut(s)	114, 136
BspPI	GGATC	1 cut(s)	24
BspT104I	TTCGAA	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	4 cut(s)	352, 615, 673, 1067
BssECI	CCNNGG	1 cut(s)	801
BssHII	GCGCGC	1 cut(s)	896
BssMI	GATC	2 cut(s)	16, 1047
BssSI	CACGAG	2 cut(s)	170, 525
Bst2BI	CACGAG	2 cut(s)	170, 525
Bst4CI	ACNGT	3 cut(s)	541, 630, 783
Bst6I	CTCTTC	1 cut(s)	1094
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	4 cut(s)	27, 390, 898, 948
BstDEI	CTNAG	4 cut(s)	30, 36, 153, 1113
BstF5I	GGATG	5 cut(s)	13, 218, 301, 586, 811
BstFNI	CGCG	2 cut(s)	898, 1098
BstH2I	RGCGCY	2 cut(s)	763, 827
BstHHI	GCGC	5 cut(s)	762, 826, 898, 900, 1098
BstKTI	GATC	2 cut(s)	19, 1050
BstMAI	GTCTC	1 cut(s)	1091
BstMBI	GATC	2 cut(s)	16, 1047
BstMWI	GCNNNNNNNGC	2 cut(s)	832, 1102
BstNSI	RCATGY	2 cut(s)	237, 404
BstSFI	CTRYAG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	2 cut(s)	898, 1098
BstV1I	GCAGC	4 cut(s)	52, 572, 724, 859
BstV2I	GAAGAC	1 cut(s)	888
BstXI	CCANNNNNNTGG	1 cut(s)	680
BsuRI	GGCC	2 cut(s)	135, 641
BtsCI	GGATG	5 cut(s)	13, 218, 301, 586, 811
BtsIMutI	CAGTG	2 cut(s)	788, 1060
Cac8I	GCNNGC	4 cut(s)	27, 390, 898, 948
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	5 cut(s)	762, 826, 898, 900, 1098
Cfr13I	GGNCC	2 cut(s)	134, 1007
CseI	GACGC	1 cut(s)	729
Csp6I	GTAC	2 cut(s)	688, 794
CviQI	GTAC	2 cut(s)	688, 794
DdeI	CTNAG	4 cut(s)	30, 36, 153, 1113
DpnI	GATC	2 cut(s)	18, 1049
DpnII	GATC	2 cut(s)	16, 1047
DraI	TTTAAA	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	1094
EarI	CTCTTC	1 cut(s)	1094
Eco47I	GGWCC	1 cut(s)	1007
Eco47III	AGCGCT	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	1075
Eco88I	CYCGRG	1 cut(s)	876
Esp3I	CGTCTC	1 cut(s)	1091
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	3 cut(s)	285, 440, 707
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	1047
Fnu4HI	GCNGC	4 cut(s)	41, 561, 738, 873
FokI	GGATG	5 cut(s)	20, 205, 308, 593, 818
Fsp4HI	GCNGC	4 cut(s)	41, 561, 738, 873
FspBI	CTAG	1 cut(s)	797
GlaI	GCGC	5 cut(s)	761, 825, 897, 899, 1097
GluI	GCNGC	4 cut(s)	41, 561, 738, 873
GsaI	CCCAGC	1 cut(s)	412
GsuI	CTGGAG	2 cut(s)	402, 632
HaeII	RGCGCY	2 cut(s)	763, 827
HaeIII	GGCC	2 cut(s)	135, 641
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	5 cut(s)	762, 826, 898, 900, 1098
Hin6I	GCGC	5 cut(s)	760, 824, 896, 898, 1096
HinP1I	GCGC	5 cut(s)	760, 824, 896, 898, 1096
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	3 cut(s)	80, 542, 668
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	450, 975
Hpy188III	TCNNGA	8 cut(s)	14, 20, 62, 122, 170, 381, 878, 914
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	6 cut(s)	83, 126, 176, 194, 425, 509
HpyCH4III	ACNGT	3 cut(s)	541, 630, 783
HpyCH4IV	ACGT	2 cut(s)	816, 940
HpyCH4V	TGCA	6 cut(s)	106, 244, 625, 786, 908, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	832, 1102
HpyF3I	CTNAG	4 cut(s)	30, 36, 153, 1113
HpySE526I	ACGT	2 cut(s)	816, 940
HspAI	GCGC	5 cut(s)	760, 824, 896, 898, 1096
Ksp22I	TGATCA	1 cut(s)	1047
Kzo9I	GATC	2 cut(s)	16, 1047
LmnI	GCTCC	3 cut(s)	22, 435, 557
Lsp1109I	GCAGC	4 cut(s)	52, 572, 724, 859
LweI	GCATC	3 cut(s)	115, 760, 859
MaeI	CTAG	1 cut(s)	797
MaeII	ACGT	2 cut(s)	816, 940
MaeIII	GTNAC	5 cut(s)	82, 178, 530, 656, 936
MalI	GATC	2 cut(s)	18, 1049
MboI	GATC	2 cut(s)	16, 1047
MboII	GAAGA	5 cut(s)	296, 582, 779, 893, 1081
MhlI	GDGCHC	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	2 cut(s)	902, 999
MluNI	TGGCCA	1 cut(s)	641
MnlI	CCTC	7 cut(s)	538, 595, 607, 610, 796, 830, 921
Mox20I	TGGCCA	1 cut(s)	641
MroXI	GAANNNNTTC	2 cut(s)	165, 885
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	4 cut(s)	195, 597, 711, 729
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	641
MvnI	CGCG	2 cut(s)	898, 1098
MwoI	GCNNNNNNNGC	2 cut(s)	832, 1102
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	2 cut(s)	16, 1047
NlaIV	GGNNCC	2 cut(s)	114, 136
NmeAIII	GCCGAG	1 cut(s)	826
NmuCI	GTSAC	3 cut(s)	178, 530, 656
NspI	RCATGY	2 cut(s)	237, 404
NspV	TTCGAA	1 cut(s)	282
PauI	GCGCGC	1 cut(s)	896
PciI	ACATGT	1 cut(s)	400
PdmI	GAANNNNTTC	2 cut(s)	165, 885
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	42, 562, 739, 874
PscI	ACATGT	1 cut(s)	400
PsiI	TTATAA	1 cut(s)	749
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	114, 136
PspPI	GGNCC	2 cut(s)	134, 1007
PstNI	CAGNNNCTG	1 cut(s)	872
PteI	GCGCGC	1 cut(s)	896
RsaI	GTAC	2 cut(s)	689, 795
RsaNI	GTAC	2 cut(s)	688, 794
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	4 cut(s)	195, 597, 711, 729
SatI	GCNGC	4 cut(s)	41, 561, 738, 873
Sau3AI	GATC	2 cut(s)	16, 1047
Sau96I	GGNCC	2 cut(s)	134, 1007
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	3 cut(s)	115, 760, 859
SfcI	CTRYAG	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	1 cut(s)	1007
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	3 cut(s)	120, 755, 912
SmoI	CTYRAG	3 cut(s)	120, 755, 912
Sse9I	AATT	2 cut(s)	902, 999
SspMI	CTAG	1 cut(s)	797
TaaI	ACNGT	3 cut(s)	541, 630, 783
TaiI	ACGT	2 cut(s)	819, 943
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	902, 999
TatI	WGTACW	2 cut(s)	687, 793
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	4 cut(s)	195, 597, 711, 729
Tru9I	TTAA	4 cut(s)	195, 597, 711, 729
TscAI	CASTG	2 cut(s)	788, 1067
TseFI	GTSAC	3 cut(s)	178, 530, 656
TseI	GCWGC	4 cut(s)	40, 560, 737, 872
Tsp45I	GTSAC	3 cut(s)	178, 530, 656
TspDTI	ATGAA	8 cut(s)	312, 389, 495, 519, 648, 655, 780, 822
TspGWI	ACGGA	1 cut(s)	1048
TspRI	CASTG	2 cut(s)	788, 1067
VpaK11BI	GGWCC	1 cut(s)	1007
XapI	RAATTY	2 cut(s)	902, 999
XceI	RCATGY	2 cut(s)	237, 404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmnI	GAANNNNTTC	2 cut(s)	165, 885
XspI	CTAG	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.