Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0020159

Physical Location & Seq

Genomic Coordinates Forward (+)

1492908 .. 1495231

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1017200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGGATGTTCGGGAGCAGGCTGAGCAGGAAAGTCAACTACTTGGTCAAGATGGTGAAAATGAAACAGTAACTGAAGATGCTACCTTCGTTCGTGGAGAACCTTCTCAAGATGCTAATGGCCCCCCAAAAGTTGATTCCAAGGCGGAAATCCTTCATGAGAAAGTCACACAGCAAATCATTAAGGAAGGTTATGGTCAATACCATCCAAGTATTCAACATGCTTCTGTAATGCACTACAGGGCATGGACTGAAAGCACGGGACACAAGTTTGAATACACCTGGGATGAACAACGACCACTTGAAATGATTTTAGGAAAAGAAATGACTGGCTTGGCAATTGGGGTGTCCAGCATGAAGTCTGGAGAGCGTGCACTATTACATGTAGGCTGGGAGTTAGGGTATGGGAAAGAAGGGGGCTTTTCTTTTCCGAATGTCCCACCAGTGGCAGATATATCATATGAAGTTGAGCTTATTGGATTTGATGAAACCAAAGAAGGGAAAGCTCGTAGTGACATGACTGTGGAGGAAAGGATTGGAGCACCCGATAGAAGAAAGATGGATGGAAATGCTTTATTTAAAGAGGAAAAACTAGAGGAGGCAATGCAACAGTATGAAATGGTTACGCACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

212

Amino Acids

23.82

Weight (kDa)

4.73

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	77 - 159	5.8e-14	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21640
malus_domestica	MD02G1308400.v1.1 MD07G1017200.v1.1
pyrus_communis	pycom02g25970 pycom07g01120
rosa_samantha	Rh5BG177700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	445, 498
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	218, 275, 305
AjnI	CCWGG	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	2 cut(s)	472, 506
AluI	AGCT	2 cut(s)	472, 506
Alw21I	GWGCWC	2 cut(s)	376, 544
Alw44I	GTGCAC	1 cut(s)	372
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	121
ApaLI	GTGCAC	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	376
Bbv12I	GWGCWC	2 cut(s)	376, 544
BccI	CCATC	4 cut(s)	47, 213, 553, 557
BciT130I	CCWGG	1 cut(s)	283
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	238
BlpI	GCTNAGC	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	2 cut(s)	70, 103
BpmI	CTGGAG	1 cut(s)	384
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	141, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 498
Bse1I	ACTGG	2 cut(s)	334, 443
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	141, 282
BseGI	GGATG	4 cut(s)	13, 205, 292, 568
BseLI	CCNNNNNNNGG	2 cut(s)	445, 498
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	334, 443
BseRI	GAGGAG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	390
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	376, 544
BslFI	GGGAC	2 cut(s)	276, 422
BslI	CCNNNNNNNGG	2 cut(s)	445, 498
BsmFI	GGGAC	2 cut(s)	276, 422
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	376, 544
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	2 cut(s)	334, 443
BssECI	CCNNGG	2 cut(s)	141, 282
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	3 cut(s)	70, 523, 612
BstC8I	GCNNGC	2 cut(s)	21, 372
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	13, 205, 292, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	2 cut(s)	224, 386
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	4 cut(s)	13, 205, 292, 568
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	21, 372
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	6 cut(s)	158, 221, 246, 355, 383, 517
CviJI	RGCY	7 cut(s)	23, 123, 333, 390, 420, 472, 506
CviKI_1	RGCY	7 cut(s)	23, 123, 333, 390, 420, 472, 506
DdeI	CTNAG	1 cut(s)	24
DraI	TTTAAA	1 cut(s)	580
EciI	GGCGGA	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	6 cut(s)	161, 224, 249, 358, 386, 520
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	276, 422
FatI	CATG	6 cut(s)	157, 220, 245, 354, 382, 516
FauNDI	CATATG	1 cut(s)	460
FokI	GGATG	4 cut(s)	20, 192, 299, 575
FspBI	CTAG	1 cut(s)	593
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	6 cut(s)	161, 224, 249, 358, 386, 520
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	38, 374
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	5 cut(s)	14, 50, 110, 158, 363
Hpy8I	GTNNAC	2 cut(s)	38, 374
HpyAV	CCTTC	6 cut(s)	97, 114, 164, 182, 407, 491
HpyCH4III	ACNGT	3 cut(s)	70, 523, 612
HpyCH4V	TGCA	3 cut(s)	235, 374, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	6 cut(s)	161, 224, 249, 358, 386, 520
LmnI	GCTCC	2 cut(s)	16, 539
LweI	GCATC	2 cut(s)	70, 103
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	4 cut(s)	70, 166, 512, 622
MboII	GAAGA	2 cut(s)	89, 564
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	376, 544
MluCI	AATT	1 cut(s)	339
MnlI	CCTC	4 cut(s)	520, 577, 589, 592
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	2 cut(s)	183, 579
MslI	CAYNNNNRTG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeI	CATATG	1 cut(s)	460
NlaIII	CATG	6 cut(s)	161, 224, 249, 358, 386, 520
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	166, 512
NspI	RCATGY	2 cut(s)	224, 386
PagI	TCATGA	1 cut(s)	157
PciI	ACATGT	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	137
PscI	ACATGT	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	183, 579
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	376, 544
SetI	ASST	6 cut(s)	89, 106, 193, 284, 474, 508
SfaNI	GCATC	2 cut(s)	70, 103
SfcI	CTRYAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	70, 523, 612
TasI	AATT	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	183, 579
Tru9I	TTAA	2 cut(s)	183, 579
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	2 cut(s)	166, 512
Tsp45I	GTSAC	2 cut(s)	166, 512
TspDTI	ATGAA	7 cut(s)	78, 146, 303, 371, 477, 501, 630
TspRI	CASTG	1 cut(s)	450
VneI	GTGCAC	1 cut(s)	372
XceI	RCATGY	2 cut(s)	224, 386
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.