AT3G23290

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016485
Physical Location & Seq
Forward (+)
8326628 .. 8328557
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23290.2

Sequence Viewer

Length: 588 bp
ATGGATCATATCATCGGCTTTATGGGCACAACAAACATGTCACATAACACAAACCTTATGATCGCTGCCGCAGCCACTACCACTACGACCTCTTCGTCTTCCTCTTCGTCCTCCGGAGGCTCGGGGACTAACCAGCTAAGCAGGTACGAGAATCAGAAGAGAAGAGATTGGAACACTTTCGGACAGTATCTACGCAATCACCGTCCACCACTTTCTCTCTCCCGTTGCAGTGGTGCTCATGTTCTTGAATTCCTCAGGTACCTCGACCAATTCGGCAAGACTAAGGTTCACACACACCTATGTCCGTTCTTCGGACACCCAAACCCACCAGCACCATGTGCCTGTCCACTCCGACAAGCGTGGGGTAGTCTGGACGCACTCATTGGCCGTCTTAGAGCTGCTTTTGAAGAGAACGGTGGTTCACCAGAGACGAACCCTTTTGGTGCACGAGCCGTTCGACTCTACCTAAGGGAAGTACGTGACTCGCAGGCTAAAGCACGTGGGATCAGCTATGAAAAAAAGAAGCGCAAGCGACCTCCTCCGCCACTACCACCGGCTCAGCCGGCGATTTCAAGTAGCCCTAATTAA

Protein Analysis

195

Amino Acids

21.43

Weight (kDa)

10.2

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 44 - 161 3.7e-66 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23290
fragaria_vesca FvH4_4g03750
malus_domestica MD13G1214900.v1.1 MD16G1220100.v1.1
prunus_persica Prupe.1G040300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393491
rosa_laevigata RLG00000009744 RLG00000009749
rosa_roxburghii Rroxscaffold_5G00338420
rosa_rugosa Rorug04G0001000
rosa_samantha Rh4AG047700 Rh4BG043600 Rh4CG050400
rosa_wichuraiana Rw4G003760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
Acc36I ACCTGC 1 cut(s) 132
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 2 cut(s) 69, 542
AclWI GGATC 2 cut(s) 12, 512
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 1 cut(s) 248
AcvI CACGTG 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 3 cut(s) 146, 260, 477
AfiI CCNNNNNNNGG 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 3 cut(s) 248, 407, 573
AluBI AGCT 3 cut(s) 136, 398, 510
AluI AGCT 3 cut(s) 136, 398, 510
Alw21I GWGCWC 2 cut(s) 238, 448
Alw26I GTCTC 1 cut(s) 422
Alw44I GTGCAC 1 cut(s) 444
AlwI GGATC 2 cut(s) 12, 512
Ama87I CYCGRG 1 cut(s) 121
Aor13HI TCCGGA 1 cut(s) 113
AoxI GGCC 1 cut(s) 385
ApaLI GTGCAC 1 cut(s) 444
ApeKI GCWGC 3 cut(s) 65, 71, 398
ApoI RAATTY 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 176
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 528
AsuHPI GGTGA 2 cut(s) 191, 414
AvaI CYCGRG 1 cut(s) 121
AxyI CCTNAGG 2 cut(s) 254, 467
BaeGI GKGCMC 2 cut(s) 29, 448
BanI GGYRCC 1 cut(s) 258
BauI CACGAG 1 cut(s) 447
BbrPI CACGTG 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 2 cut(s) 238, 448
BbvI GCAGC 3 cut(s) 52, 83, 385
BceAI ACGGC 2 cut(s) 372, 437
BcoDI GTCTC 1 cut(s) 422
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 4 cut(s) 66, 69, 72, 399
BlpI GCTNAGC 2 cut(s) 137, 558
BlsI GCNGC 4 cut(s) 67, 70, 73, 400
BmeT110I CYCGRG 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 90
Bpu1102I GCTNAGC 2 cut(s) 137, 558
BsaAI YACGTR 2 cut(s) 479, 500
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse118I RCCGGY 2 cut(s) 553, 562
Bse21I CCTNAGG 2 cut(s) 254, 467
BseAI TCCGGA 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 2 cut(s) 268, 572
BseRI GAGGAG 1 cut(s) 528
BseSI GKGCMC 2 cut(s) 29, 448
BseXI GCAGC 3 cut(s) 52, 83, 385
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 238, 448
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 3 cut(s) 114, 554, 563
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 3 cut(s) 29, 238, 448
Bsp13I TCCGGA 1 cut(s) 113
Bsp143I GATC 3 cut(s) 4, 60, 504
Bsp1720I GCTNAGC 2 cut(s) 137, 558
BspACI CCGC 2 cut(s) 69, 542
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 2 cut(s) 267, 571
BspEI TCCGGA 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 260
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 2 cut(s) 12, 512
BspT107I GGYRCC 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 553, 562
BssAI RCCGGY 2 cut(s) 553, 562
BssMI GATC 3 cut(s) 4, 60, 504
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 186, 203, 416
Bst6I CTCTTC 5 cut(s) 97, 109, 152, 157, 402
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBAI YACGTR 2 cut(s) 479, 500
BstC8I GCNNGC 3 cut(s) 489, 530, 564
BstDEI CTNAG 6 cut(s) 137, 254, 282, 392, 467, 558
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 3 cut(s) 7, 63, 507
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 3 cut(s) 4, 60, 504
BstMWI GCNNNNNNNGC 4 cut(s) 24, 71, 338, 563
BstNSI RCATGY 1 cut(s) 40
BstSLI GKGCMC 2 cut(s) 29, 448
BstV1I GCAGC 3 cut(s) 52, 83, 385
BstV2I GAAGAC 1 cut(s) 90
Bsu36I CCTNAGG 2 cut(s) 254, 467
BsuRI GGCC 1 cut(s) 387
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 3 cut(s) 489, 530, 564
CfoI GCGC 1 cut(s) 528
Cfr10I RCCGGY 2 cut(s) 553, 562
CseI GACGC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 145, 259, 476
CviAII CATG 3 cut(s) 37, 239, 336
CviQI GTAC 3 cut(s) 145, 259, 476
DdeI CTNAG 6 cut(s) 137, 254, 282, 392, 467, 558
DpnI GATC 3 cut(s) 6, 62, 506
DpnII GATC 3 cut(s) 4, 60, 504
DraIII CACNNNGTG 1 cut(s) 338
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 5 cut(s) 97, 109, 152, 157, 402
EarI CTCTTC 5 cut(s) 97, 109, 152, 157, 402
EciI GGCGGA 1 cut(s) 531
Eco72I CACGTG 1 cut(s) 500
Eco81I CCTNAGG 2 cut(s) 254, 467
Eco88I CYCGRG 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 248
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 3 cut(s) 40, 242, 339
FaiI YATR 9 cut(s) 9, 23, 38, 45, 59, 240, 301, 337, 513
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 36, 238, 335
Fnu4HI GCNGC 4 cut(s) 66, 69, 72, 399
Fsp4HI GCNGC 4 cut(s) 66, 69, 72, 399
GlaI GCGC 1 cut(s) 527
GluI GCNGC 4 cut(s) 66, 69, 72, 399
HaeIII GGCC 1 cut(s) 387
HapII CCGG 3 cut(s) 114, 554, 563
HgaI GACGC 1 cut(s) 383
HhaI GCGC 1 cut(s) 528
Hin1II CATG 3 cut(s) 40, 242, 339
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HinfI GANTC 3 cut(s) 151, 459, 482
HpaII CCGG 3 cut(s) 114, 554, 563
HphI GGTGA 2 cut(s) 191, 414
Hpy166II GTNNAC 5 cut(s) 206, 289, 347, 422, 446
Hpy188I TCNGA 4 cut(s) 156, 182, 314, 353
Hpy188III TCNNGA 3 cut(s) 114, 245, 371
Hpy8I GTNNAC 5 cut(s) 206, 289, 347, 422, 446
HpyCH4III ACNGT 3 cut(s) 186, 203, 416
HpyCH4IV ACGT 2 cut(s) 478, 499
HpyCH4V TGCA 2 cut(s) 228, 446
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 71, 338, 563
HpyF3I CTNAG 6 cut(s) 137, 254, 282, 392, 467, 558
HpySE526I ACGT 2 cut(s) 478, 499
Hsp92II CATG 3 cut(s) 40, 242, 339
HspAI GCGC 1 cut(s) 526
Kpn2I TCCGGA 1 cut(s) 113
KpnI GGTACC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 562
KroNI GCCGGC 1 cut(s) 564
Kzo9I GATC 3 cut(s) 4, 60, 504
Lsp1109I GCAGC 3 cut(s) 52, 83, 385
MaeII ACGT 2 cut(s) 478, 499
MaeIII GTNAC 2 cut(s) 39, 479
MalI GATC 3 cut(s) 6, 62, 506
MboI GATC 3 cut(s) 4, 60, 504
MboII GAAGA 7 cut(s) 84, 90, 96, 169, 174, 301, 419
MhlI GDGCHC 3 cut(s) 29, 238, 448
MluCI AATT 3 cut(s) 248, 269, 583
MlyI GAGTC 2 cut(s) 453, 476
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 8 cut(s) 100, 110, 112, 121, 263, 272, 546, 549
MroI TCCGGA 1 cut(s) 113
MroNI GCCGGC 1 cut(s) 562
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 1 cut(s) 586
MslI CAYNNNNRTG 1 cut(s) 298
MspI CCGG 3 cut(s) 114, 554, 563
MwoI GCNNNNNNNGC 4 cut(s) 24, 71, 338, 563
NaeI GCCGGC 1 cut(s) 564
NdeII GATC 3 cut(s) 4, 60, 504
NgoMIV GCCGGC 1 cut(s) 562
NlaIII CATG 3 cut(s) 40, 242, 339
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 39, 479
NspI RCATGY 1 cut(s) 40
PciI ACATGT 1 cut(s) 36
PcsI WCGNNNNNNNCGW 3 cut(s) 92, 199, 454
PdiI GCCGGC 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 4 cut(s) 67, 70, 73, 400
PleI GAGTC 2 cut(s) 453, 476
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 2 cut(s) 453, 476
Ppu21I YACGTR 2 cut(s) 479, 500
PscI ACATGT 1 cut(s) 36
PspCI CACGTG 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 260
RsaI GTAC 3 cut(s) 146, 260, 477
RsaNI GTAC 3 cut(s) 145, 259, 476
RseI CAYNNNNRTG 1 cut(s) 298
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 4 cut(s) 66, 69, 72, 399
Sau3AI GATC 3 cut(s) 4, 60, 504
SchI GAGTC 2 cut(s) 453, 476
SduI GDGCHC 3 cut(s) 29, 238, 448
SmiMI CAYNNNNRTG 1 cut(s) 298
Sse9I AATT 3 cut(s) 248, 269, 583
SsiI CCGC 2 cut(s) 69, 542
TaaI ACNGT 3 cut(s) 186, 203, 416
TaiI ACGT 2 cut(s) 481, 502
TaqI TCGA 2 cut(s) 264, 457
TasI AATT 3 cut(s) 248, 269, 583
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 2 cut(s) 39, 479
TseI GCWGC 3 cut(s) 65, 71, 398
Tsp45I GTSAC 2 cut(s) 39, 479
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 1 cut(s) 235
VneI GTGCAC 1 cut(s) 444
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.