Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016485

Physical Location & Seq

Genomic Coordinates Forward (+)

6550909 .. 6554305

Gene Structure 3397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCCTCCATTGATATTGTCATCGCAAGCTTTGCTACTTCCCTTGCACTCGCTAAAGGAGGCGGCGCTCTGATTGACCTAGGGAAGATTGGTGATGCGCTGGAATCCATGGATTCACTTCAAGGATTTGGTAGCCCTTCAGACACAAACAGTTCCTCAAGCAACATCAACCTCAACTCTTCTTCCTCATCCTCAACCCCAAGCTCTCCTACTGCCACTCTCAGCCGCTACGAAAACCAAAAGCGGCGAGACTGGAACACATTCGGTCAGTACCTCAGGAACCACCGGCCGCCGCTGTCCCTGTCCCGGTGCAGCGGGGCCCACGTCCTGGAGTTCCTGAGGTACCTTGACCAGTTCGGGAAGACCAAAGTCCACACCCAAATGTGTCCCTTCTTTGGGCACCCAAACCCTCCTGCGCCGTGCCCCTGCCCTCTGCGCCAAGCTTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGTGCCGCCTTTGAAGAGCACGGTGGGAAGCCTGAGGCAAACCCTTTCGGGGCTAGAGCCGTGAGGCTCTATCTCCGCGAGGTTCGCGACTCACAGGCCAAAGCTAGAGGAATCAGCTATGACAAGAAGAAGCGCAAGAGGCCACCGCAGTCAGCTAGTACTACTTCTCTTCAAGCATTAATGCCTCCAACTCCTCCTCCAGGTCCTCCTCCTTCTAGTAGTGCAAGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

236

Amino Acids

25.38

Weight (kDa)

9.83

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	65 - 189	4e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23290
fragaria_vesca	FvH4_4g03750
malus_domestica	MD13G1214900.v1.1 MD16G1220100.v1.1
prunus_persica	Prupe.1G040300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0393491
rosa_laevigata	RLG00000009744 RLG00000009749
rosa_roxburghii	Rroxscaffold_5G00338420
rosa_rugosa	Rorug04G0001000
rosa_samantha	Rh4AG047700 Rh4BG043600 Rh4CG050400
rosa_wichuraiana	Rw4G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	342, 399
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccII	CGCG	2 cut(s)	555, 564
AcoI	YGGCCR	2 cut(s)	287, 469
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	3 cut(s)	272, 344, 637
AfiI	CCNNNNNNNGG	7 cut(s)	306, 328, 395, 396, 445, 526, 677
AgsI	TTSAA	3 cut(s)	122, 491, 650
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	327, 676
AluBI	AGCT	6 cut(s)	30, 204, 443, 581, 594, 632
AluI	AGCT	6 cut(s)	30, 204, 443, 581, 594, 632
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	243
AoxI	GGCC	6 cut(s)	3, 287, 318, 469, 573, 617
ApaI	GGGCCC	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	312, 450
AseI	ATTAAT	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	342
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	5 cut(s)	68, 100, 418, 438, 612
AspS9I	GGNCC	3 cut(s)	318, 319, 680
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	680
AvrII	CCTAGG	1 cut(s)	79
AxyI	CCTNAGG	3 cut(s)	275, 338, 510
BaeGI	GKGCMC	3 cut(s)	322, 402, 425
BanI	GGYRCC	2 cut(s)	342, 399
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	324, 462
BceAI	ACGGC	2 cut(s)	403, 521
BciT130I	CCWGG	2 cut(s)	329, 678
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	5 cut(s)	80, 531, 582, 633, 693
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	9 cut(s)	64, 226, 245, 290, 293, 313, 451, 472, 483
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	9 cut(s)	65, 227, 246, 291, 294, 314, 452, 473, 484
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	3 cut(s)	307, 329, 678
Bme18I	GGWCC	1 cut(s)	680
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	3 cut(s)	318, 319, 680
BmiI	GGNNCC	5 cut(s)	281, 319, 320, 344, 401
BmrFI	CCNGG	3 cut(s)	307, 329, 678
BmsI	GCATC	1 cut(s)	85
BoxI	GACNNNNGTC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	2 cut(s)	350, 660
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	79, 108
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	7 cut(s)	306, 328, 395, 396, 445, 526, 677
Bse118I	RCCGGY	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	257, 352
Bse21I	CCTNAGG	3 cut(s)	275, 338, 510
BseBI	CCWGG	2 cut(s)	329, 678
BseDI	CCNNGG	2 cut(s)	79, 108
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	7 cut(s)	306, 328, 395, 396, 445, 526, 677
BseMII	CTCAG	4 cut(s)	235, 289, 329, 501
BseNI	ACTGG	2 cut(s)	257, 352
BseRI	GAGGAG	3 cut(s)	660, 663, 675
BseSI	GKGCMC	3 cut(s)	322, 402, 425
BseX3I	CGGCCG	2 cut(s)	287, 469
BseXI	GCAGC	2 cut(s)	324, 462
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	555, 564
Bsh1285I	CGRYCG	2 cut(s)	290, 472
BshFI	GGCC	6 cut(s)	5, 289, 320, 471, 575, 619
BshNI	GGYRCC	2 cut(s)	342, 399
BsiEI	CGRYCG	2 cut(s)	290, 472
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	286, 307
BslFI	GGGAC	3 cut(s)	283, 289, 372
BslI	CCNNNNNNNGG	7 cut(s)	306, 328, 395, 396, 445, 526, 677
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	3 cut(s)	283, 289, 372
BsnI	GGCC	6 cut(s)	5, 289, 320, 471, 575, 619
Bsp120I	GGGCCC	1 cut(s)	318
Bsp1286I	GDGCHC	4 cut(s)	322, 402, 425, 498
Bsp19I	CCATGG	1 cut(s)	108
Bsp68I	TCGCGA	1 cut(s)	564
BspANI	GGCC	6 cut(s)	5, 289, 320, 471, 575, 619
BspCNI	CTCAG	4 cut(s)	234, 288, 330, 502
BspFNI	CGCG	2 cut(s)	555, 564
BspLI	GGNNCC	5 cut(s)	281, 319, 320, 344, 401
BspQI	GCTCTTC	1 cut(s)	486
BspT107I	GGYRCC	2 cut(s)	342, 399
BsrFI	RCCGGY	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	257, 352
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	79, 108
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	2 cut(s)	79, 108
Bst2UI	CCWGG	2 cut(s)	329, 678
Bst4CI	ACNGT	2 cut(s)	152, 500
Bst6I	CTCTTC	3 cut(s)	184, 486, 651
BstACI	GRCGYC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	4 cut(s)	221, 275, 338, 510
BstDSI	CCRYGG	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	188
BstFNI	CGCG	2 cut(s)	555, 564
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	5 cut(s)	68, 100, 418, 438, 612
BstMAI	GTCTC	1 cut(s)	243
BstMCI	CGRYCG	2 cut(s)	290, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 435, 561, 616
BstNI	CCWGG	2 cut(s)	329, 678
BstPAI	GACNNNNGTC	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	305, 327, 676
BstSLI	GKGCMC	3 cut(s)	322, 402, 425
BstUI	CGCG	2 cut(s)	555, 564
BstV1I	GCAGC	2 cut(s)	324, 462
BstV2I	GAAGAC	1 cut(s)	368
BstZI	CGGCCG	2 cut(s)	287, 469
Bsu36I	CCTNAGG	3 cut(s)	275, 338, 510
BsuRI	GGCC	6 cut(s)	5, 289, 320, 471, 575, 619
BtgI	CCRYGG	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	188
BtuMI	TCGCGA	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	5 cut(s)	68, 100, 418, 438, 612
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	318, 319, 680
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	271, 343, 636
CviAII	CATG	1 cut(s)	109
CviQI	GTAC	3 cut(s)	271, 343, 636
DdeI	CTNAG	4 cut(s)	221, 275, 338, 510
EaeI	YGGCCR	2 cut(s)	287, 469
EagI	CGGCCG	2 cut(s)	287, 469
Eam1104I	CTCTTC	3 cut(s)	184, 486, 651
EarI	CTCTTC	3 cut(s)	184, 486, 651
EclXI	CGGCCG	2 cut(s)	287, 469
Eco130I	CCWWGG	2 cut(s)	79, 108
Eco24I	GRGCYC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	680
Eco52I	CGGCCG	2 cut(s)	287, 469
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	3 cut(s)	275, 338, 510
EcoNI	CCTNNNNNAGG	1 cut(s)	675
EcoO109I	RGGNCCY	2 cut(s)	318, 680
EcoRII	CCWGG	2 cut(s)	327, 676
EcoT14I	CCWWGG	2 cut(s)	79, 108
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	2 cut(s)	79, 108
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 597
FaqI	GGGAC	3 cut(s)	283, 289, 372
FatI	CATG	1 cut(s)	108
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	9 cut(s)	64, 226, 245, 290, 293, 313, 451, 472, 483
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	9 cut(s)	64, 226, 245, 290, 293, 313, 451, 472, 483
FspBI	CTAG	5 cut(s)	80, 531, 582, 633, 693
GlaI	GCGC	5 cut(s)	67, 99, 417, 437, 611
GluI	GCNGC	9 cut(s)	64, 226, 245, 290, 293, 313, 451, 472, 483
GsuI	CTGGAG	2 cut(s)	350, 660
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	6 cut(s)	5, 289, 320, 471, 575, 619
HapII	CCGG	2 cut(s)	286, 307
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	5 cut(s)	68, 100, 418, 438, 612
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	5 cut(s)	66, 98, 416, 436, 610
HinP1I	GCGC	5 cut(s)	66, 98, 416, 436, 610
HindIII	AAGCTT	2 cut(s)	28, 441
HinfI	GANTC	4 cut(s)	104, 113, 566, 588
HpaII	CCGG	2 cut(s)	286, 307
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	72, 142
Hpy188III	TCNNGA	4 cut(s)	277, 337, 358, 563
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	147, 400, 699
HpyCH4III	ACNGT	2 cut(s)	152, 500
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	47, 312, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 435, 561, 616
HpyF3I	CTNAG	4 cut(s)	221, 275, 338, 510
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	5 cut(s)	66, 98, 416, 436, 610
KpnI	GGTACC	1 cut(s)	346
LguI	GCTCTTC	1 cut(s)	486
Lsp1109I	GCAGC	2 cut(s)	324, 462
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	5 cut(s)	80, 531, 582, 633, 693
MaeII	ACGT	1 cut(s)	324
MboII	GAAGA	7 cut(s)	97, 171, 174, 373, 503, 616, 638
MhlI	GDGCHC	4 cut(s)	322, 402, 425, 498
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	689
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	656
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	2 cut(s)	295, 315
MspI	CCGG	2 cut(s)	286, 307
MspR9I	CCNGG	3 cut(s)	307, 329, 678
MvaI	CCWGG	2 cut(s)	329, 678
MvnI	CGCG	2 cut(s)	555, 564
MwoI	GCNNNNNNNGC	4 cut(s)	32, 435, 561, 616
NciI	CCSGG	1 cut(s)	307
NcoI	CCATGG	1 cut(s)	108
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	5 cut(s)	281, 319, 320, 344, 401
NruI	TCGCGA	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	104, 113, 588
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	9 cut(s)	65, 227, 246, 291, 294, 314, 452, 473, 484
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PpuMI	RGGWCCY	1 cut(s)	680
PshAI	GACNNNNGTC	1 cut(s)	368
PshBI	ATTAAT	1 cut(s)	656
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	2 cut(s)	327, 676
PspGI	CCWGG	2 cut(s)	327, 676
PspN4I	GGNNCC	5 cut(s)	281, 319, 320, 344, 401
PspOMI	GGGCCC	1 cut(s)	318
PspPI	GGNCC	3 cut(s)	318, 319, 680
PspPPI	RGGWCCY	1 cut(s)	680
RruI	TCGCGA	1 cut(s)	564
RsaI	GTAC	3 cut(s)	272, 344, 637
RsaNI	GTAC	3 cut(s)	271, 343, 636
RseI	CAYNNNNRTG	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	9 cut(s)	64, 226, 245, 290, 293, 313, 451, 472, 483
Sau96I	GGNCC	3 cut(s)	318, 319, 680
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	3 cut(s)	307, 329, 678
SduI	GDGCHC	4 cut(s)	322, 402, 425, 498
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SspMI	CTAG	5 cut(s)	80, 531, 582, 633, 693
StyD4I	CCNGG	3 cut(s)	305, 327, 676
StyI	CCWWGG	2 cut(s)	79, 108
TaaI	ACNGT	2 cut(s)	152, 500
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	456
TaqII	GACCGA	1 cut(s)	254
TatI	WGTACW	1 cut(s)	635
TauI	GCSGC	7 cut(s)	66, 228, 247, 292, 295, 474, 485
TfiI	GAWTC	3 cut(s)	104, 113, 588
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TseI	GCWGC	2 cut(s)	312, 450
TspGWI	ACGGA	1 cut(s)	467
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	656
XagI	CCTNNNNNAGG	1 cut(s)	675
XmaJI	CCTAGG	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	5 cut(s)	80, 531, 582, 633, 693
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.