Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016485

Physical Location & Seq

Genomic Coordinates Reverse (-)

57256645 .. 57257718

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGGGTAAAGTAGTCATTGACAAAAAGGATTTGGTAGCCCTTCAGACACAAACAGTTCCTCAAGCAACATCAACCTCAACTCGATCTTCTTCATCATCCTCAACCCCAAGCTCTCCTACTGCCACTCTCAGCCGCTACGAAAACCAAAAGCGGCGAGACTGGAACACCTTCGGTCAGTACCTCAGGAACCACCGGCCGCCGCTATCCCTGTCCCGGTGCAGCGGGGCCCACGTCCTGGAGTTCCTGAGGCACCTTGACCAGTTCGGGAAGACCAAAGTCCACACCCAAATGTGTCCATTCTTTGGGCACCCAAACCCTCCTGCGCCGTGCCCCTGCCCTCTGCGCCAAGCTTGGGGCAGCCTTGACGCCCTCATCGGCCGCCTCCGTGCCGCCTTTGAAGAGCAAGGTGGGAAGCCTGACTGCCTGAGGCAAACCCTTTCGGGGCTAGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

153

Amino Acids

16.86

Weight (kDa)

9.5

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	35 - 141	1.4e-56	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23290
fragaria_vesca	FvH4_4g03750
malus_domestica	MD13G1214900.v1.1 MD16G1220100.v1.1
prunus_persica	Prupe.1G040300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0393491
rosa_laevigata	RLG00000009744 RLG00000009749
rosa_roxburghii	Rroxscaffold_5G00338420
rosa_rugosa	Rorug04G0001000
rosa_samantha	Rh4AG047700 Rh4BG043600 Rh4CG050400
rosa_wichuraiana	Rw4G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	252, 309
AccB7I	CCANNNNNTGG	2 cut(s)	238, 305
AciI	CCGC	7 cut(s)	136, 154, 200, 203, 225, 382, 393
AcoI	YGGCCR	2 cut(s)	197, 379
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	5 cut(s)	216, 238, 305, 355, 444
AgsI	TTSAA	1 cut(s)	401
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	114, 353, 454
AluI	AGCT	3 cut(s)	114, 353, 454
Alw26I	GTCTC	1 cut(s)	153
AoxI	GGCC	3 cut(s)	197, 228, 379
ApaI	GGGCCC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	222, 360
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	328, 348
AspS9I	GGNCC	2 cut(s)	228, 229
AsuC2I	CCSGG	1 cut(s)	217
AxyI	CCTNAGG	3 cut(s)	185, 248, 428
BaeGI	GKGCMC	3 cut(s)	232, 312, 335
BanI	GGYRCC	2 cut(s)	252, 309
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	234, 372
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	449
BisI	GCNGC	8 cut(s)	136, 155, 200, 203, 223, 361, 382, 393
BlsI	GCNGC	8 cut(s)	137, 156, 201, 204, 224, 362, 383, 394
Bme1390I	CCNGG	2 cut(s)	217, 239
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	228, 229
BmiI	GGNNCC	5 cut(s)	191, 229, 230, 254, 311
BmrFI	CCNGG	2 cut(s)	217, 239
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	217
BsaHI	GRCGYC	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	5 cut(s)	216, 238, 305, 355, 444
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	167, 262
Bse21I	CCTNAGG	3 cut(s)	185, 248, 428
BseBI	CCWGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	5 cut(s)	216, 238, 305, 355, 444
BseMII	CTCAG	4 cut(s)	145, 199, 239, 419
BseNI	ACTGG	2 cut(s)	167, 262
BseSI	GKGCMC	3 cut(s)	232, 312, 335
BseX3I	CGGCCG	2 cut(s)	197, 379
BseXI	GCAGC	2 cut(s)	234, 372
BsgI	GTGCAG	1 cut(s)	241
Bsh1285I	CGRYCG	2 cut(s)	200, 382
BshFI	GGCC	3 cut(s)	199, 230, 381
BshNI	GGYRCC	2 cut(s)	252, 309
BsiEI	CGRYCG	2 cut(s)	200, 382
BsiSI	CCGG	2 cut(s)	196, 217
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	5 cut(s)	216, 238, 305, 355, 444
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	199, 230, 381
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	232, 312, 335
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	7 cut(s)	136, 154, 200, 203, 225, 382, 393
BspANI	GGCC	3 cut(s)	199, 230, 381
BspCNI	CTCAG	4 cut(s)	144, 198, 240, 420
BspLI	GGNNCC	5 cut(s)	191, 229, 230, 254, 311
BspQI	GCTCTTC	1 cut(s)	396
BspT107I	GGYRCC	2 cut(s)	252, 309
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	167, 262
BssAI	RCCGGY	1 cut(s)	195
BssMI	GATC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	369
BstDEI	CTNAG	4 cut(s)	131, 185, 248, 428
BstF5I	GGATG	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	328, 348
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	86
BstMCI	CGRYCG	2 cut(s)	200, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	239
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	215, 237
BstSLI	GKGCMC	3 cut(s)	232, 312, 335
BstV1I	GCAGC	2 cut(s)	234, 372
BstV2I	GAAGAC	1 cut(s)	278
BstZI	CGGCCG	2 cut(s)	197, 379
Bsu36I	CCTNAGG	3 cut(s)	185, 248, 428
BsuRI	GGCC	3 cut(s)	199, 230, 381
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	98
CfoI	GCGC	2 cut(s)	328, 348
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	228, 229
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	181
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	4 cut(s)	131, 185, 248, 428
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	197, 379
EagI	CGGCCG	2 cut(s)	197, 379
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EclXI	CGGCCG	2 cut(s)	197, 379
Eco24I	GRGCYC	1 cut(s)	232
Eco52I	CGGCCG	2 cut(s)	197, 379
Eco57I	CTGAAG	1 cut(s)	29
Eco81I	CCTNAGG	3 cut(s)	185, 248, 428
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	232
FaqI	GGGAC	1 cut(s)	199
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	8 cut(s)	136, 155, 200, 203, 223, 361, 382, 393
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	8 cut(s)	136, 155, 200, 203, 223, 361, 382, 393
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	2 cut(s)	327, 347
GluI	GCNGC	8 cut(s)	136, 155, 200, 203, 223, 361, 382, 393
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	199, 230, 381
HapII	CCGG	2 cut(s)	196, 217
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	2 cut(s)	328, 348
Hin1I	GRCGYC	1 cut(s)	369
Hin6I	GCGC	2 cut(s)	326, 346
HinP1I	GCGC	2 cut(s)	326, 346
HindIII	AAGCTT	1 cut(s)	351
HpaII	CCGG	2 cut(s)	196, 217
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	3 cut(s)	187, 247, 268
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	53, 181
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	4 cut(s)	131, 185, 248, 428
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	369
HspAI	GCGC	2 cut(s)	326, 346
Kzo9I	GATC	1 cut(s)	86
LguI	GCTCTTC	1 cut(s)	396
Lsp1109I	GCAGC	2 cut(s)	234, 372
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	234
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	4 cut(s)	81, 84, 283, 413
MhlI	GDGCHC	3 cut(s)	232, 312, 335
MroXI	GAANNNNTTC	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	2 cut(s)	196, 217
MspR9I	CCNGG	2 cut(s)	217, 239
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	86
NlaIV	GGNNCC	5 cut(s)	191, 229, 230, 254, 311
PciSI	GCTCTTC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	170
PflMI	CCANNNNNTGG	2 cut(s)	238, 305
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	8 cut(s)	137, 156, 201, 204, 224, 362, 383, 394
PshAI	GACNNNNGTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	5 cut(s)	191, 229, 230, 254, 311
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	228, 229
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	8 cut(s)	136, 155, 200, 203, 223, 361, 382, 393
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	2 cut(s)	228, 229
ScrFI	CCNGG	2 cut(s)	217, 239
SduI	GDGCHC	3 cut(s)	232, 312, 335
SetI	ASST	9 cut(s)	80, 116, 173, 186, 237, 258, 355, 412, 456
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SsiI	CCGC	7 cut(s)	136, 154, 200, 203, 225, 382, 393
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	2 cut(s)	215, 237
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	85
TaqII	GACCGA	1 cut(s)	164
TauI	GCSGC	6 cut(s)	138, 157, 202, 205, 384, 395
TseI	GCWGC	2 cut(s)	222, 360
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	377
Van91I	CCANNNNNTGG	2 cut(s)	238, 305
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.