Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016485

Physical Location & Seq

Genomic Coordinates Forward (+)

3307723 .. 3308319

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATTCACTTCAAGGATTTGGTAGCCCTTCAGATACAAACAGTTCCTCAAGCAGCATCAACCTCAACTCTTCTTGCTCATCCTCCTCAAACCCAAGCTCCCCTACTGCCACTCTCAGCCGCTACGAAAATCAAAAGCGGCGAGACTGGAACACCTTCGGTCAGTACCTCAGAAACCACCGGCCGCCGTTGTCCCTGCCCCGGTGCAGCGGGGCCCACGTTCTGGAGTTCCTGAGGTACCTTGACCAGTTTGGGAAGACCAAAGTCCACACCCAAATGTGTCCCTTCTTTGGGCACCCAAACCCTCCTGCGCCCTGCCCCTGCCCTCTGCGCCAAGCTTGGGGCAGCCTTGACGCCCTCATCGGCCGCCTCCGTGCCGCCTTTGAAGAGAACGGCGGGAAGCCTGAGGCAAACCCTTTTGGGGCTAGAGCGGTGAGGCTCTATCTTCGTGAGGTTCGTGATTCTCAGGCCAAAGCTAGAGGGATCAGCTATGGCAAGAAGAAGCGTAAGAGGCCACCACAGTCATCGGCTAGAACTAGTCTAATGCCAACAACTCCTCCTCCAGCTCCTCCTCCTCCTAGTAGTGCAAGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

199

Amino Acids

21.7

Weight (kDa)

10.25

Isoelectric Point (pI)

67.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	30 - 154	4.2e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23290
fragaria_vesca	FvH4_4g03750
malus_domestica	MD13G1214900.v1.1 MD16G1220100.v1.1
prunus_persica	Prupe.1G040300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0393491
rosa_laevigata	RLG00000009744 RLG00000009749
rosa_roxburghii	Rroxscaffold_5G00338420
rosa_rugosa	Rorug04G0001000
rosa_samantha	Rh4AG047700 Rh4BG043600 Rh4CG050400
rosa_wichuraiana	Rw4G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	237, 294
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	431
AciI	CCGC	8 cut(s)	121, 139, 185, 210, 367, 378, 396, 431
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	2 cut(s)	182, 364
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	2 cut(s)	167, 239
AfiI	CCNNNNNNNGG	6 cut(s)	201, 223, 290, 291, 340, 421
AgsI	TTSAA	2 cut(s)	14, 386
AhlI	ACTAGT	1 cut(s)	536
AluBI	AGCT	5 cut(s)	99, 338, 476, 489, 566
AluI	AGCT	5 cut(s)	99, 338, 476, 489, 566
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	5 cut(s)	182, 213, 364, 468, 512
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	54, 207, 345
Asp700I	GAANNNNTTC	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	313, 333
AspS9I	GGNCC	2 cut(s)	213, 214
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	445
AxyI	CCTNAGG	2 cut(s)	233, 405
BaeGI	GKGCMC	2 cut(s)	217, 297
BanI	GGYRCC	2 cut(s)	237, 294
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	66, 219, 357
BceAI	ACGGC	2 cut(s)	172, 409
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	138
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	5 cut(s)	426, 477, 531, 537, 579
BisI	GCNGC	8 cut(s)	55, 121, 140, 185, 208, 346, 367, 378
BlsI	GCNGC	8 cut(s)	56, 122, 141, 186, 209, 347, 368, 379
Bme1390I	CCNGG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	213, 214
BmiI	GGNNCC	4 cut(s)	214, 215, 239, 296
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	66
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	2 cut(s)	245, 546
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 541, 544, 571, 574
Bsc4I	CCNNNNNNNGG	6 cut(s)	201, 223, 290, 291, 340, 421
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	152, 247
Bse21I	CCTNAGG	2 cut(s)	233, 405
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	6 cut(s)	201, 223, 290, 291, 340, 421
BseMII	CTCAG	5 cut(s)	130, 184, 224, 396, 479
BseNI	ACTGG	2 cut(s)	152, 247
BseRI	GAGGAG	6 cut(s)	76, 546, 549, 558, 561, 564
BseSI	GKGCMC	2 cut(s)	217, 297
BseX3I	CGGCCG	2 cut(s)	182, 364
BseXI	GCAGC	3 cut(s)	66, 219, 357
BsgI	GTGCAG	1 cut(s)	226
Bsh1285I	CGRYCG	2 cut(s)	185, 367
BshFI	GGCC	5 cut(s)	184, 215, 366, 470, 514
BshNI	GGYRCC	2 cut(s)	237, 294
BsiEI	CGRYCG	2 cut(s)	185, 367
BsiSI	CCGG	2 cut(s)	181, 202
BslFI	GGGAC	2 cut(s)	178, 267
BslI	CCNNNNNNNGG	6 cut(s)	201, 223, 290, 291, 340, 421
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	2 cut(s)	178, 267
BsnI	GGCC	5 cut(s)	184, 215, 366, 470, 514
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	217, 297
Bsp143I	GATC	1 cut(s)	483
BspACI	CCGC	8 cut(s)	121, 139, 185, 210, 367, 378, 396, 431
BspANI	GGCC	5 cut(s)	184, 215, 366, 470, 514
BspCNI	CTCAG	5 cut(s)	129, 183, 225, 397, 478
BspLI	GGNNCC	4 cut(s)	214, 215, 239, 296
BspPI	GGATC	1 cut(s)	491
BspT107I	GGYRCC	2 cut(s)	237, 294
BsrBI	CCGCTC	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	152, 247
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	483
BssNI	GRCGYC	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	44, 522
Bst6I	CTCTTC	2 cut(s)	76, 381
BstACI	GRCGYC	1 cut(s)	354
BstDEI	CTNAG	5 cut(s)	116, 170, 233, 405, 465
BstF5I	GGATG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	313, 333
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	483
BstMCI	CGRYCG	2 cut(s)	185, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 511
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	200
BstSLI	GKGCMC	2 cut(s)	217, 297
BstV1I	GCAGC	3 cut(s)	66, 219, 357
BstV2I	GAAGAC	1 cut(s)	263
BstZI	CGGCCG	2 cut(s)	182, 364
Bsu36I	CCTNAGG	2 cut(s)	233, 405
BsuRI	GGCC	5 cut(s)	184, 215, 366, 470, 514
BtsCI	GGATG	1 cut(s)	80
CfoI	GCGC	2 cut(s)	313, 333
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	213, 214
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	166, 238
CviQI	GTAC	2 cut(s)	166, 238
DdeI	CTNAG	5 cut(s)	116, 170, 233, 405, 465
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
EaeI	YGGCCR	2 cut(s)	182, 364
EagI	CGGCCG	2 cut(s)	182, 364
Eam1104I	CTCTTC	2 cut(s)	76, 381
EarI	CTCTTC	2 cut(s)	76, 381
EclXI	CGGCCG	2 cut(s)	182, 364
Eco24I	GRGCYC	1 cut(s)	217
Eco52I	CGGCCG	2 cut(s)	182, 364
Eco57I	CTGAAG	1 cut(s)	15
Eco81I	CCTNAGG	2 cut(s)	233, 405
EcoO109I	RGGNCCY	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	217
FaiI	YATR	1 cut(s)	492
FaqI	GGGAC	2 cut(s)	178, 267
FauI	CCCGC	2 cut(s)	203, 389
Fnu4HI	GCNGC	8 cut(s)	55, 121, 140, 185, 208, 346, 367, 378
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	8 cut(s)	55, 121, 140, 185, 208, 346, 367, 378
FspBI	CTAG	5 cut(s)	426, 477, 531, 537, 579
GlaI	GCGC	2 cut(s)	312, 332
GluI	GCNGC	8 cut(s)	55, 121, 140, 185, 208, 346, 367, 378
GsuI	CTGGAG	2 cut(s)	245, 546
HaeIII	GGCC	5 cut(s)	184, 215, 366, 470, 514
HapII	CCGG	2 cut(s)	181, 202
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	2 cut(s)	313, 333
Hin1I	GRCGYC	1 cut(s)	354
Hin6I	GCGC	2 cut(s)	311, 331
HinP1I	GCGC	2 cut(s)	311, 331
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	2 cut(s)	5, 461
HpaII	CCGG	2 cut(s)	181, 202
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	34, 173
Hpy188III	TCNNGA	4 cut(s)	224, 232, 449, 458
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	39, 166, 295
HpyCH4III	ACNGT	2 cut(s)	44, 522
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	207, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 511
HpyF3I	CTNAG	5 cut(s)	116, 170, 233, 405, 465
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	354
HspAI	GCGC	2 cut(s)	311, 331
KpnI	GGTACC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	104, 571
Lsp1109I	GCAGC	3 cut(s)	66, 219, 357
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	5 cut(s)	426, 477, 531, 537, 579
MaeII	ACGT	1 cut(s)	219
MalI	GATC	1 cut(s)	485
MbiI	CCGCTC	1 cut(s)	431
MboI	GATC	1 cut(s)	483
MboII	GAAGA	5 cut(s)	63, 268, 398, 437, 511
MhlI	GDGCHC	2 cut(s)	217, 297
MroXI	GAANNNNTTC	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	2 cut(s)	181, 202
MspR9I	CCNGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	330, 511
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	1 cut(s)	483
NlaIV	GGNNCC	4 cut(s)	214, 215, 239, 296
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	5, 461
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	8 cut(s)	56, 122, 141, 186, 209, 347, 368, 379
PshAI	GACNNNNGTC	1 cut(s)	263
PspN4I	GGNNCC	4 cut(s)	214, 215, 239, 296
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	213, 214
RsaI	GTAC	2 cut(s)	167, 239
RsaNI	GTAC	2 cut(s)	166, 238
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	8 cut(s)	55, 121, 140, 185, 208, 346, 367, 378
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	2 cut(s)	213, 214
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	217, 297
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SpeI	ACTAGT	1 cut(s)	536
SsiI	CCGC	8 cut(s)	121, 139, 185, 210, 367, 378, 396, 431
SspMI	CTAG	5 cut(s)	426, 477, 531, 537, 579
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	44, 522
TaiI	ACGT	1 cut(s)	222
TaqII	GACCGA	1 cut(s)	149
TauI	GCSGC	5 cut(s)	123, 142, 187, 369, 380
TfiI	GAWTC	2 cut(s)	5, 461
TseI	GCWGC	3 cut(s)	54, 207, 345
TspGWI	ACGGA	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	5 cut(s)	426, 477, 531, 537, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.