Prupe.1G040300_v2.0.a1

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016485
Physical Location & Seq
Forward (+)
2872155 .. 2875084
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G040300.1

Sequence Viewer

Length: 627 bp
ATGGATTCGCTTCCAGAATTCAACCCTTCCAACGCATCAAACAGTTCAAGCATCAACATCAACACCACCACCACCACCACCACCACCAGCTCCAATACAGTACCTGCGGCCTCACCCTCATCAGCCACATCCTCCACTCTCAGCCGCTACGAGAACCAAAAGCGGAGAGACTGGAACACCTTCGGGCAGTACCTCCGCAACCACAGGCCACCGCTGTCCCTCGCACGGTGCAGCGGGGCCCACGTGCTTGAGTTCCTCAGGTACCTAGACCAGTTTGGGAAGACCAAAGTGCACACTCAGCTGTGTCCCTTCTTTGGGCATCCAAACCCTCCTGCACCGTGCCCTTGCCCTCTGCGCCAAGCTTGGGGAAGCCTAGATGCCCTCATCGGCCGCCTCCGAGCAGCCTTTGAAGAGCACGGTGGGAAGCCTGAGGCCAACCCTTTTGGGGCTCGTGCTGTGAGGCTTTATCTGCGTGAGGTTCGCGATTCTCAGGCCAAAGCCAGAGGAATTAGCTACGAGAAGAAGAAGAGGAAGCGCCCACCACAGAGTAGTAGTACTACTAGTGCTCTTCCAGTTCAAGCAATATTGCCTCCAACTCCTCCTCCAGCTCCTCCAGGTGCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF640

Protein Analysis

209

Amino Acids

22.68

Weight (kDa)

10.13

Isoelectric Point (pI)

59.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23290
fragaria_vesca FvH4_4g03750
malus_domestica MD13G1214900.v1.1 MD16G1220100.v1.1
prunus_persica Prupe.1G040300_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393491
rosa_laevigata RLG00000009744 RLG00000009749
rosa_roxburghii Rroxscaffold_5G00338420
rosa_rugosa Rorug04G0001000
rosa_samantha Rh4AG047700 Rh4BG043600 Rh4CG050400
rosa_wichuraiana Rw4G003760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 112
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccII CGCG 1 cut(s) 483
AciI CCGC 7 cut(s) 107, 145, 163, 196, 212, 234, 391
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 1 cut(s) 17
AcvI CACGTG 1 cut(s) 244
AfaI GTAC 4 cut(s) 102, 191, 263, 556
AfiI CCNNNNNNNGG 5 cut(s) 225, 314, 315, 364, 445
AgsI TTSAA 4 cut(s) 22, 48, 410, 578
AhlI ACTAGT 1 cut(s) 560
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 6 cut(s) 90, 301, 362, 513, 608, 624
AluI AGCT 6 cut(s) 90, 301, 362, 513, 608, 624
Alw21I GWGCWC 3 cut(s) 294, 417, 568
Alw26I GTCTC 1 cut(s) 162
Alw44I GTGCAC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 6 cut(s) 108, 206, 237, 388, 432, 492
ApaI GGGCCC 1 cut(s) 241
ApaLI GTGCAC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 231, 401
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 357, 537
AspS9I GGNCC 2 cut(s) 237, 238
AsuHPI GGTGA 1 cut(s) 105
AxyI CCTNAGG 2 cut(s) 257, 429
BaeGI GKGCMC 3 cut(s) 241, 294, 344
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 2 cut(s) 241, 451
BauI CACGAG 1 cut(s) 450
BbrPI CACGTG 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 3 cut(s) 294, 417, 568
BbvI GCAGC 2 cut(s) 243, 413
BciT130I CCWGG 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 162
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 3 cut(s) 266, 374, 561
BfoI RGCGCY 1 cut(s) 538
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 5 cut(s) 108, 145, 232, 391, 402
BlsI GCNGC 5 cut(s) 109, 146, 233, 392, 403
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 237, 238
BmiI GGNNCC 3 cut(s) 238, 239, 263
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 4 cut(s) 44, 60, 328, 367
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 2 cut(s) 588, 597
BpuEI CTTGAG 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 5 cut(s) 225, 314, 315, 364, 445
Bse1I ACTGG 3 cut(s) 176, 271, 572
Bse21I CCTNAGG 2 cut(s) 257, 429
BseBI CCWGG 1 cut(s) 615
BseGI GGATG 2 cut(s) 128, 319
BseLI CCNNNNNNNGG 5 cut(s) 225, 314, 315, 364, 445
BseMII CTCAG 5 cut(s) 154, 271, 311, 420, 503
BseNI ACTGG 3 cut(s) 176, 271, 572
BseRI GAGGAG 3 cut(s) 588, 591, 600
BseSI GKGCMC 3 cut(s) 241, 294, 344
BseX3I CGGCCG 1 cut(s) 388
BseXI GCAGC 2 cut(s) 243, 413
BsgI GTGCAG 2 cut(s) 250, 318
Bsh1236I CGCG 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 391
BshFI GGCC 6 cut(s) 110, 208, 239, 390, 434, 494
BshNI GGYRCC 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 391
BsiHKAI GWGCWC 3 cut(s) 294, 417, 568
BslFI GGGAC 2 cut(s) 202, 291
BslI CCNNNNNNNGG 5 cut(s) 225, 314, 315, 364, 445
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 202, 291
BsnI GGCC 6 cut(s) 110, 208, 239, 390, 434, 494
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 6 cut(s) 241, 294, 344, 417, 451, 568
Bsp68I TCGCGA 1 cut(s) 483
BspACI CCGC 7 cut(s) 107, 145, 163, 196, 212, 234, 391
BspANI GGCC 6 cut(s) 110, 208, 239, 390, 434, 494
BspCNI CTCAG 5 cut(s) 153, 270, 310, 421, 502
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 3 cut(s) 238, 239, 263
BspMI ACCTGC 1 cut(s) 112
BspQI GCTCTTC 2 cut(s) 405, 573
BspT107I GGYRCC 1 cut(s) 261
BsrI ACTGG 3 cut(s) 176, 271, 572
BssSI CACGAG 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 5 cut(s) 44, 100, 228, 339, 419
Bst6I CTCTTC 3 cut(s) 405, 521, 573
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 5 cut(s) 140, 257, 297, 429, 489
BstF5I GGATG 2 cut(s) 128, 319
BstFNI CGCG 1 cut(s) 483
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 2 cut(s) 357, 537
BstMAI GTCTC 1 cut(s) 162
BstMCI CGRYCG 1 cut(s) 391
BstMWI GCNNNNNNNGC 3 cut(s) 298, 354, 469
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 613
BstSLI GKGCMC 3 cut(s) 241, 294, 344
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 243, 413
BstV2I GAAGAC 1 cut(s) 287
BstZI CGGCCG 1 cut(s) 388
Bsu36I CCTNAGG 2 cut(s) 257, 429
BsuRI GGCC 6 cut(s) 110, 208, 239, 390, 434, 494
BtsCI GGATG 2 cut(s) 128, 319
BtuMI TCGCGA 1 cut(s) 483
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 622
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 2 cut(s) 357, 537
Cfr13I GGNCC 2 cut(s) 237, 238
Csp6I GTAC 4 cut(s) 101, 190, 262, 555
CviQI GTAC 4 cut(s) 101, 190, 262, 555
DdeI CTNAG 5 cut(s) 140, 257, 297, 429, 489
EaeI YGGCCR 1 cut(s) 388
EagI CGGCCG 1 cut(s) 388
Eam1104I CTCTTC 3 cut(s) 405, 521, 573
EarI CTCTTC 3 cut(s) 405, 521, 573
EclXI CGGCCG 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 241, 451
Eco52I CGGCCG 1 cut(s) 388
Eco72I CACGTG 1 cut(s) 244
Eco81I CCTNAGG 2 cut(s) 257, 429
EcoO109I RGGNCCY 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 241, 451
FaqI GGGAC 2 cut(s) 202, 291
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 5 cut(s) 108, 145, 232, 391, 402
FokI GGATG 2 cut(s) 115, 306
FriOI GRGCYC 2 cut(s) 241, 451
Fsp4HI GCNGC 5 cut(s) 108, 145, 232, 391, 402
FspBI CTAG 3 cut(s) 266, 374, 561
GlaI GCGC 2 cut(s) 356, 536
GluI GCNGC 5 cut(s) 108, 145, 232, 391, 402
GsuI CTGGAG 2 cut(s) 588, 597
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 6 cut(s) 110, 208, 239, 390, 434, 494
HhaI GCGC 2 cut(s) 357, 537
Hin6I GCGC 2 cut(s) 355, 535
HinP1I GCGC 2 cut(s) 355, 535
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 2 cut(s) 5, 485
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 398
Hpy188III TCNNGA 2 cut(s) 14, 482
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 3 cut(s) 36, 190, 319
HpyCH4III ACNGT 5 cut(s) 44, 100, 228, 339, 419
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 231, 292, 335, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 354, 469
HpyF3I CTNAG 5 cut(s) 140, 257, 297, 429, 489
HpySE526I ACGT 1 cut(s) 243
HspAI GCGC 2 cut(s) 355, 535
KpnI GGTACC 1 cut(s) 265
LguI GCTCTTC 2 cut(s) 405, 573
LmnI GCTCC 2 cut(s) 95, 613
Lsp1109I GCAGC 2 cut(s) 243, 413
LweI GCATC 4 cut(s) 44, 60, 328, 367
MaeI CTAG 3 cut(s) 266, 374, 561
MaeII ACGT 1 cut(s) 243
MboII GAAGA 6 cut(s) 292, 422, 532, 535, 538, 560
MhlI GDGCHC 6 cut(s) 241, 294, 344, 417, 451, 568
MluCI AATT 2 cut(s) 17, 507
MmeI TCCRAC 2 cut(s) 54, 617
MroXI GAANNNNTTC 1 cut(s) 179
MspA1I CMGCKG 3 cut(s) 214, 234, 301
MspR9I CCNGG 1 cut(s) 615
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 3 cut(s) 298, 354, 469
NlaIV GGNNCC 3 cut(s) 238, 239, 263
NruI TCGCGA 1 cut(s) 483
PciSI GCTCTTC 2 cut(s) 405, 573
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 5, 485
PkrI GCNGC 5 cut(s) 109, 146, 233, 392, 403
PmaCI CACGTG 1 cut(s) 244
PmlI CACGTG 1 cut(s) 244
Ppu21I YACGTR 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 613
PspCI CACGTG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 3 cut(s) 238, 239, 263
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 237, 238
PstNI CAGNNNCTG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 301
RruI TCGCGA 1 cut(s) 483
RsaI GTAC 4 cut(s) 102, 191, 263, 556
RsaNI GTAC 4 cut(s) 101, 190, 262, 555
SapI GCTCTTC 2 cut(s) 405, 573
SatI GCNGC 5 cut(s) 108, 145, 232, 391, 402
Sau96I GGNCC 2 cut(s) 237, 238
ScaI AGTACT 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 6 cut(s) 241, 294, 344, 417, 451, 568
SfaNI GCATC 4 cut(s) 44, 60, 328, 367
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 2 cut(s) 17, 507
SsiI CCGC 7 cut(s) 107, 145, 163, 196, 212, 234, 391
SspI AATATT 1 cut(s) 585
SspMI CTAG 3 cut(s) 266, 374, 561
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 5 cut(s) 44, 100, 228, 339, 419
TaiI ACGT 1 cut(s) 246
TasI AATT 2 cut(s) 17, 507
TatI WGTACW 1 cut(s) 554
TauI GCSGC 3 cut(s) 110, 147, 393
TfiI GAWTC 2 cut(s) 5, 485
TseI GCWGC 2 cut(s) 231, 401
VneI GTGCAC 1 cut(s) 290
XapI RAATTY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 3 cut(s) 266, 374, 561
ZrmI AGTACT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.