Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009879

Physical Location & Seq

Genomic Coordinates Reverse (-)

9279513 .. 9282906

Gene Structure 3394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

ATGTTGCAAGGAAGAAGAGAAGCAAAAAAGAGTTATGCTTTGTTCTCTTCAACTTTCTTCTTCTTCTTTATCTGTTTTCTTTCTTCTTCTTCTGCAGAACTCACAGACAAAGGTGTTAACTTTGAAGTTGTTGCCTTAATAGGAATCAAAAGCTCACTGACTGATCCTCATGGAGTTCTAATGAATTGGGATGACACAGCAGTTGATCCATGTAGCTGGAACATGATCACTTGTTCTGATGGTTTTGTCATAAGGCTAGAAGCTCCAAGCCAAAACTTATCAGGAACTCTTTCATCAAGTATTGGAAATTTAACAAATCTTCAAACTGTGTTATTGCAGAACAATTACATAACAGGAAACATCCCTCATGAGATTGGGAAATTGATGAAACTCAAAACACTTGATCTCTCTACCAATAACTTCACTGGTCAAATCCCATTCACTCTTTCTTACTCCAAAAATCTTCAGTACTTGAGGGTTAATAATAACAGCCTGACAGGAACAATTCCTAGCTCATTGGCAAACATGACCCAACTCACTTTTTTGGATTTGTCGTATAATAACTTGAGTGGACCAGTTCCAAGATCACTTGCCAAAACATTCAATGTTATGGGCAATTCTCAGATTTGTCCAACAGGAACTGAGAAAGACTGTAATGGGACTCAGCCTAAGCCAATGTCAATCACCTTGAACAGTTCTCAAAATAAATCATCTGATGGAGGAACTAAAAACCGGAAAATCGCGGTAGTCTTCGGTGTAAGCTTGACATGTGTTTGCTTGTTGATCATTGGCTTTGGTTTTCTTCTTTGGTGGAGAAGAAGACATAACAAACAAGTATTATTCTTTGACATTAATGAGCAAAACAAGGAAGAAATGTGTCTAGGGAATCTAAGGAGGTTTAATTTCAAAGAACTTCAATCCGCAACTAGTAACTTCAGCAGCAAGAATCTGGTCGGAAAAGGAGGGTTTGGAAATGTGTATAAAGGTTGTCTTCATGATGGAAGTATCATCGCGGTGAAGAGATTAAAGGATATAAACAATGGTGGTGGAGAGGTTCAGTTTCAGACAGAGCTTGAAATGATAAGCCTTGCCGTCCACCGGAATCTCCTCCGCTTATACGGTTTCTGTACTACTTCCTCTGAACGGCTTCTCGTTTATCCTTACATGTCCAATGGCAGTGTCGCTTCTCGTCTCAAAGCTAAACCGGTATTGGATTGGGGCACAAGAAAGCGAATAGCATTAGGAGCAGGAAGAGGGTTGCTGTATTTGCATGAGCAATGTGATCCAAAGATCATTCACCGTGATGTCAAAGCTGCGAACATACTTCTTGACGATTACTTTGAAGCTGTTGTCGGAGATTTCGGGTTGGCTAAGCTTTTGGATCATGAGGAGTCGCATGTGACAACCGCCGTGAGAGGAACAGTGGGTCACATTGCACCTGAGTATCTCTCAACAGGACAATCTTCTGAGAAGACAGATGTGTTCGGTTTCGGGATTCTTCTTCTCGAATTGATTACTGGATTGAGAGCTCTTGAATTCGGAAAAGCAGCAAACCAAAGAGGAGCGATACTTGATTGGGTAAAGAAACTACAACAAGAGAAGAAGCTAGAACAGATAGTAGACAAGGATTTGAAGAGCAACTACGATAGAATAGAAGTGGAAGAAATGGTTCAAGTGGCTTTGCTTTGTACACAGTATCTTCCCATTCACCGTCCTAAGATGTCTGAAGTTGTGAGAATGCTTGAAGGCGATGGTCTTGTTGAGAAATGGGAAGCTTCTTCTCAGAGAGCAGAAACCAATAGAAGTTACAGTAAACCTAACGAGTTTTCTTCCTCTGAACGTTATTCGGATCTTACAGATGATTCCTCGGTGCTGGTTCAAGCCATGGAGTTATCAGGTCCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

635

Amino Acids

70.6

Weight (kDa)

8.44

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	40 - 79	2.6e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	92 - 184	2e-09	Leucine-rich repeat region
LRR_4	PF12799	105 - 145	3.5e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	130 - 189	1.5e-07	Leucine rich repeat
LRR_4	PF12799	153 - 190	2.7e-06	Leucine Rich repeats (2 copies)
Pkinase	PF00069	313 - 578	4e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	315 - 581	4.7e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25560 AT3G25560 AT3G25560
fragaria_vesca	FvH4_4g28660 FvH4_4g28660 FvH4_4g28660
malus_domestica	MD13G1052700.v1.1 MD16G1057000.v1.1
prunus_persica	Prupe.1G299300_v2.0.a1
pyrus_communis	pycom13g04720 pycom16g05010
rosa_chinensis	RchiOBHm_Chr4g0436771
rosa_laevigata	RLG00000006497
rosa_multiflora	Rmu_sc0001837.1_g000004
rosa_roxburghii	Rroxscaffold_5G00377840
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350400 Rh4BG359300 Rh4CG373600 Rh4DG353300
rosa_wichuraiana	Rw4G030660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1620
AccII	CGCG	2 cut(s)	743, 1013
AciI	CCGC	5 cut(s)	743, 921, 1013, 1111, 1407
AclI	AACGTT	1 cut(s)	1840
AclWI	GGATC	5 cut(s)	158, 200, 1277, 1389, 1857
AcsI	RAATTY	2 cut(s)	307, 1535
AcuI	CTGAAG	3 cut(s)	449, 919, 1746
AfaI	GTAC	3 cut(s)	470, 1129, 1690
AfiI	CCNNNNNNNGG	2 cut(s)	1098, 1143
AflIII	ACRYGT	2 cut(s)	767, 1164
AgeI	ACCGGT	1 cut(s)	1204
AhlI	ACTAGT	1 cut(s)	926
Alw21I	GWGCWC	1 cut(s)	1531
Alw26I	GTCTC	1 cut(s)	1196
AlwI	GGATC	5 cut(s)	158, 200, 1277, 1389, 1857
AlwNI	CAGNNNCTG	1 cut(s)	641
ApeKI	GCWGC	3 cut(s)	939, 1313, 1547
ApoI	RAATTY	2 cut(s)	307, 1535
ArsI	GACNNNNNNTTYG	2 cut(s)	1322, 1354
AseI	ATTAAT	1 cut(s)	852
AsiGI	ACCGGT	1 cut(s)	1204
Asp700I	GAANNNNTTC	3 cut(s)	289, 1146, 1668
AspS9I	GGNCC	2 cut(s)	572, 1898
AsuHPI	GGTGA	4 cut(s)	676, 1027, 1289, 1700
AvaII	GGWCC	2 cut(s)	572, 1898
BaeGI	GKGCMC	1 cut(s)	1223
BaeI	ACNNNNGTAYC	2 cut(s)	1427, 1460
BanII	GRGCYC	1 cut(s)	1531
BarI	GAAGNNNNNNTAC	2 cut(s)	1625, 1657
BbsI	GAAGAC	4 cut(s)	742, 826, 983, 1478
Bbv12I	GWGCWC	1 cut(s)	1531
BbvI	GCAGC	3 cut(s)	951, 1300, 1559
BccI	CCATC	4 cut(s)	233, 710, 992, 1745
BceAI	ACGGC	3 cut(s)	1076, 1160, 1394
BclI	TGATCA	2 cut(s)	225, 783
BcoDI	GTCTC	1 cut(s)	1196
BcuI	ACTAGT	1 cut(s)	926
BfaI	CTAG	5 cut(s)	257, 510, 881, 927, 1607
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	3 cut(s)	940, 1314, 1548
BlpI	GCTNAGC	1 cut(s)	1371
BlsI	GCNGC	3 cut(s)	941, 1315, 1549
BmcAI	AGTACT	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	572, 1898
BmgT120I	GGNCC	2 cut(s)	572, 1898
BpiI	GAAGAC	4 cut(s)	742, 826, 983, 1478
BplI	GAGNNNNNCTC	2 cut(s)	1433, 1465
Bpu10I	CCTNAGC	1 cut(s)	669
Bpu1102I	GCTNAGC	1 cut(s)	1371
BpuEI	CTTGAG	2 cut(s)	493, 586
BsaJI	CCNNGG	2 cut(s)	1866, 1884
BsaWI	WCCGGW	3 cut(s)	732, 1098, 1204
Bsc4I	CCNNNNNNNGG	2 cut(s)	1098, 1143
Bse118I	RCCGGY	1 cut(s)	1204
Bse1I	ACTGG	3 cut(s)	430, 575, 1522
Bse3DI	GCAATG	2 cut(s)	1283, 1431
BseDI	CCNNGG	2 cut(s)	1866, 1884
BseGI	GGATG	2 cut(s)	196, 360
BseLI	CCNNNNNNNGG	2 cut(s)	1098, 1143
BseMI	GCAATG	2 cut(s)	1283, 1431
BseMII	CTCAG	6 cut(s)	633, 635, 677, 1431, 1458, 1796
BseNI	ACTGG	3 cut(s)	430, 575, 1522
BseRI	GAGGAG	3 cut(s)	1097, 1403, 1575
BseSI	GKGCMC	1 cut(s)	1223
BseXI	GCAGC	3 cut(s)	951, 1300, 1559
Bsh1236I	CGCG	2 cut(s)	743, 1013
BshTI	ACCGGT	1 cut(s)	1204
BsiHKAI	GWGCWC	1 cut(s)	1531
BsiSI	CCGG	3 cut(s)	733, 1099, 1205
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	2 cut(s)	1098, 1143
BsmAI	GTCTC	1 cut(s)	1196
BsmBI	CGTCTC	1 cut(s)	1196
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	1743
Bsp1286I	GDGCHC	2 cut(s)	1223, 1531
Bsp1407I	TGTACA	1 cut(s)	1688
Bsp1720I	GCTNAGC	1 cut(s)	1371
Bsp19I	CCATGG	1 cut(s)	1884
BspACI	CCGC	5 cut(s)	743, 921, 1013, 1111, 1407
BspCNI	CTCAG	6 cut(s)	634, 634, 676, 1432, 1459, 1795
BspFNI	CGCG	2 cut(s)	743, 1013
BspHI	TCATGA	3 cut(s)	367, 994, 1384
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	5 cut(s)	158, 200, 1277, 1389, 1857
BspQI	GCTCTTC	1 cut(s)	1628
BsrDI	GCAATG	2 cut(s)	1283, 1431
BsrFI	RCCGGY	1 cut(s)	1204
BsrGI	TGTACA	1 cut(s)	1688
BsrI	ACTGG	3 cut(s)	430, 575, 1522
BssAI	RCCGGY	1 cut(s)	1204
BssECI	CCNNGG	2 cut(s)	1866, 1884
BssT1I	CCWWGG	1 cut(s)	1884
Bst4CI	ACNGT	9 cut(s)	328, 653, 695, 1121, 1301, 1423, 1695, 1712, 1811
Bst6I	CTCTTC	5 cut(s)	10, 52, 1013, 1246, 1628
BstAUI	TGTACA	1 cut(s)	1688
BstDSI	CCRYGG	1 cut(s)	1884
BstF5I	GGATG	2 cut(s)	196, 360
BstFNI	CGCG	2 cut(s)	743, 1013
BstMAI	GTCTC	1 cut(s)	1196
BstMWI	GCNNNNNNNGC	2 cut(s)	1244, 1267
BstNSI	RCATGY	3 cut(s)	771, 1168, 1400
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	1223
BstUI	CGCG	2 cut(s)	743, 1013
BstV1I	GCAGC	3 cut(s)	951, 1300, 1559
BstV2I	GAAGAC	4 cut(s)	742, 826, 983, 1478
BstX2I	RGATCY	1 cut(s)	1849
BstXI	CCANNNNNNTGG	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	1849
BtgI	CCRYGG	1 cut(s)	1884
BtgZI	GCGATG	2 cut(s)	994, 1764
BtsCI	GGATG	2 cut(s)	196, 360
BtsI	GCAGTG	1 cut(s)	1183
BtsIMutI	CAGTG	4 cut(s)	155, 423, 1183, 1428
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	3 cut(s)	367, 994, 1384
Cfr10I	RCCGGY	1 cut(s)	1204
Cfr13I	GGNCC	2 cut(s)	572, 1898
Csp6I	GTAC	3 cut(s)	469, 1128, 1689
CspAI	ACCGGT	1 cut(s)	1204
CspCI	CAANNNNNGTGG	2 cut(s)	1027, 1062
CviQI	GTAC	3 cut(s)	469, 1128, 1689
Eam1104I	CTCTTC	5 cut(s)	10, 52, 1013, 1246, 1628
EarI	CTCTTC	5 cut(s)	10, 52, 1013, 1246, 1628
Ecl136II	GAGCTC	1 cut(s)	1529
Eco130I	CCWWGG	1 cut(s)	1884
Eco24I	GRGCYC	1 cut(s)	1531
Eco47I	GGWCC	2 cut(s)	572, 1898
Eco53kI	GAGCTC	1 cut(s)	1529
Eco57I	CTGAAG	3 cut(s)	449, 919, 1746
EcoICRI	GAGCTC	1 cut(s)	1529
EcoRI	GAATTC	1 cut(s)	1535
EcoT14I	CCWWGG	1 cut(s)	1884
EcoT38I	GRGCYC	1 cut(s)	1531
ErhI	CCWWGG	1 cut(s)	1884
Esp3I	CGTCTC	1 cut(s)	1196
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	1 cut(s)	673
FbaI	TGATCA	2 cut(s)	225, 783
FblI	GTMKAC	1 cut(s)	1620
Fnu4HI	GCNGC	3 cut(s)	940, 1314, 1548
FokI	GGATG	2 cut(s)	203, 347
FriOI	GRGCYC	1 cut(s)	1531
Fsp4HI	GCNGC	3 cut(s)	940, 1314, 1548
FspBI	CTAG	5 cut(s)	257, 510, 881, 927, 1607
GluI	GCNGC	3 cut(s)	940, 1314, 1548
HapII	CCGG	3 cut(s)	733, 1099, 1205
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	3 cut(s)	760, 1373, 1773
HinfI	GANTC	8 cut(s)	144, 661, 886, 946, 1102, 1391, 1495, 1862
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	3 cut(s)	733, 1099, 1205
HphI	GGTGA	4 cut(s)	676, 1027, 1289, 1700
Hpy166II	GTNNAC	6 cut(s)	118, 572, 1096, 1621, 1691, 1814
Hpy188III	TCNNGA	8 cut(s)	282, 368, 995, 1328, 1385, 1492, 1505, 1532
Hpy8I	GTNNAC	6 cut(s)	118, 572, 1096, 1621, 1691, 1814
HpyAV	CCTTC	1 cut(s)	1739
HpyCH4III	ACNGT	9 cut(s)	328, 653, 695, 1121, 1301, 1423, 1695, 1712, 1811
HpyCH4IV	ACGT	1 cut(s)	1840
HpyCH4V	TGCA	5 cut(s)	7, 95, 337, 1270, 1436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1244, 1267
HpySE526I	ACGT	1 cut(s)	1840
Ksp22I	TGATCA	2 cut(s)	225, 783
KspAI	GTTAAC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	1628
LmnI	GCTCC	3 cut(s)	268, 1244, 1562
Lsp1109I	GCAGC	3 cut(s)	951, 1300, 1559
MaeI	CTAG	5 cut(s)	257, 510, 881, 927, 1607
MaeII	ACGT	1 cut(s)	1840
MaeIII	GTNAC	4 cut(s)	929, 1399, 1427, 1805
MflI	RGATCY	1 cut(s)	1849
MhlI	GDGCHC	2 cut(s)	1223, 1531
MluCI	AATT	9 cut(s)	184, 307, 343, 380, 504, 616, 901, 1508, 1535
MlyI	GAGTC	2 cut(s)	655, 1400
MmeI	TCCRAC	3 cut(s)	656, 934, 1333
MroXI	GAANNNNTTC	3 cut(s)	289, 1146, 1668
MseI	TTAA	7 cut(s)	117, 137, 311, 480, 852, 900, 1025
MslI	CAYNNNNRTG	2 cut(s)	1013, 1302
MspI	CCGG	3 cut(s)	733, 1099, 1205
Mva1269I	GAATGC	1 cut(s)	1743
MvnI	CGCG	2 cut(s)	743, 1013
MwoI	GCNNNNNNNGC	2 cut(s)	1244, 1267
NcoI	CCATGG	1 cut(s)	1884
NmuCI	GTSAC	2 cut(s)	1399, 1427
NspI	RCATGY	3 cut(s)	771, 1168, 1400
PagI	TCATGA	3 cut(s)	367, 994, 1384
PciI	ACATGT	2 cut(s)	767, 1164
PciSI	GCTCTTC	1 cut(s)	1628
PctI	GAATGC	1 cut(s)	1743
PdmI	GAANNNNTTC	3 cut(s)	289, 1146, 1668
PfeI	GAWTC	6 cut(s)	144, 886, 946, 1102, 1495, 1862
PinAI	ACCGGT	1 cut(s)	1204
PkrI	GCNGC	3 cut(s)	941, 1315, 1549
PleI	GAGTC	2 cut(s)	655, 1399
PpsI	GAGTC	2 cut(s)	655, 1399
PscI	ACATGT	2 cut(s)	767, 1164
PshBI	ATTAAT	1 cut(s)	852
Psp124BI	GAGCTC	1 cut(s)	1531
Psp1406I	AACGTT	1 cut(s)	1840
PspPI	GGNCC	2 cut(s)	572, 1898
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	1849
RsaI	GTAC	3 cut(s)	470, 1129, 1690
RsaNI	GTAC	3 cut(s)	469, 1128, 1689
RseI	CAYNNNNRTG	2 cut(s)	1013, 1302
SacI	GAGCTC	1 cut(s)	1531
SapI	GCTCTTC	1 cut(s)	1628
SaqAI	TTAA	7 cut(s)	117, 137, 311, 480, 852, 900, 1025
SatI	GCNGC	3 cut(s)	940, 1314, 1548
Sau96I	GGNCC	2 cut(s)	572, 1898
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	2 cut(s)	655, 1400
SduI	GDGCHC	2 cut(s)	1223, 1531
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	572, 1898
SmiMI	CAYNNNNRTG	2 cut(s)	1013, 1302
SmlI	CTYRAG	2 cut(s)	472, 565
SmoI	CTYRAG	2 cut(s)	472, 565
SpeI	ACTAGT	1 cut(s)	926
Sse9I	AATT	9 cut(s)	184, 307, 343, 380, 504, 616, 901, 1508, 1535
SsiI	CCGC	5 cut(s)	743, 921, 1013, 1111, 1407
SspMI	CTAG	5 cut(s)	257, 510, 881, 927, 1607
SstI	GAGCTC	1 cut(s)	1531
StyI	CCWWGG	1 cut(s)	1884
TaaI	ACNGT	9 cut(s)	328, 653, 695, 1121, 1301, 1423, 1695, 1712, 1811
TaiI	ACGT	1 cut(s)	1843
TaqI	TCGA	1 cut(s)	1506
TasI	AATT	9 cut(s)	184, 307, 343, 380, 504, 616, 901, 1508, 1535
TatI	WGTACW	3 cut(s)	468, 1127, 1688
TfiI	GAWTC	6 cut(s)	144, 886, 946, 1102, 1495, 1862
Tru1I	TTAA	7 cut(s)	117, 137, 311, 480, 852, 900, 1025
Tru9I	TTAA	7 cut(s)	117, 137, 311, 480, 852, 900, 1025
TscAI	CASTG	4 cut(s)	162, 430, 1183, 1428
TseFI	GTSAC	2 cut(s)	1399, 1427
TseI	GCWGC	3 cut(s)	939, 1313, 1547
Tsp45I	GTSAC	2 cut(s)	1399, 1427
TspDTI	ATGAA	4 cut(s)	197, 282, 401, 983
TspRI	CASTG	4 cut(s)	162, 430, 1183, 1428
VpaK11BI	GGWCC	2 cut(s)	572, 1898
VspI	ATTAAT	1 cut(s)	852
XapI	RAATTY	2 cut(s)	307, 1535
XceI	RCATGY	3 cut(s)	771, 1168, 1400
XmiI	GTMKAC	1 cut(s)	1620
XmnI	GAANNNNTTC	3 cut(s)	289, 1146, 1668
XspI	CTAG	5 cut(s)	257, 510, 881, 927, 1607
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.