Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009879

Physical Location & Seq

Genomic Coordinates Forward (+)

3142490 .. 3143442

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGACAGCCAAAGAAAGGCTTTTGGTTTATCCTTACATGTCTAACGGAAGTGTTGCTTCGCGTCTCAAAGCCAAGCCGGCCCTGGATTGGAATACAAGGAAAAGAATTGCATTGGGAGCTGGAAGGGGTCTATTGTACTTGCATGAGCAGTGTGACCCCAAGATCATTCACCGCGATGTTAAGGCTGCGAATATTCTGCTAGATGATTACTATGAGGCTGTTGTGGGTGATTTTGGGTTGGCAAAGCTGTTGGATCACCATGATTCGCACATTACAACAGCTGTGAGGGGCACTGTAGGGCACATTGCCCCGGAGTACCTCTCAACAGGCCAGTCCTCTGAGAAGACTGATGTTTTCGGGTTTGGTATCCTTATACTTGAACTAATATCTGGCCAAAGAGCTCTTGAGTTTGGGAAAGCAGCAAACCAGAAAGGAGCCATACTTGATTGGGTGAAGAAAATCCAGCAGGAAAAGAAGTTTGATGTGCTAGTTGACAAGGAACTGAAATATGACTATGATGCAATCGAGCTCGAAGAAATGATTCAAGTAGCTCTCTTGTGCACTCAAAATCTTCCAAACCAGAGACCGAAGATGTCTGAGGTGGTTCGAATGCTCGAAGGAGATGGGCTCGCGGAGAAATGGGAGGCTTCTCAGAGAGCTGAATCGAATAGGTGCAGAGCCAATGAGTTTTCCTCCTCCGAACGGTACTCTGATCTTACCGATGACTCTTCATTGCTTGCACAAGCAATGGAACTGTCTGGACCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

257

Amino Acids

28.67

Weight (kDa)

5.76

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 203	3.1e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 205	2.9e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25560 AT3G25560 AT3G25560
fragaria_vesca	FvH4_4g28660 FvH4_4g28660 FvH4_4g28660
malus_domestica	MD13G1052700.v1.1 MD16G1057000.v1.1
prunus_persica	Prupe.1G299300_v2.0.a1
pyrus_communis	pycom13g04720 pycom16g05010
rosa_chinensis	RchiOBHm_Chr4g0436771
rosa_laevigata	RLG00000006497
rosa_multiflora	Rmu_sc0001837.1_g000004
rosa_roxburghii	Rroxscaffold_5G00377840
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350400 Rh4BG359300 Rh4CG373600 Rh4DG353300
rosa_wichuraiana	Rw4G030660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	61, 174, 632
AciI	CCGC	2 cut(s)	172, 632
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	391
AfaI	GTAC	3 cut(s)	137, 317, 707
AfiI	CCNNNNNNNGG	3 cut(s)	15, 87, 702
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	380, 545
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	7 cut(s)	119, 247, 281, 401, 529, 551, 659
AluI	AGCT	7 cut(s)	119, 247, 281, 401, 529, 551, 659
Alw21I	GWGCWC	3 cut(s)	403, 531, 563
Alw26I	GTCTC	2 cut(s)	68, 577
Alw44I	GTGCAC	1 cut(s)	559
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	3 cut(s)	78, 328, 391
ApaLI	GTGCAC	1 cut(s)	559
ApeKI	GCWGC	2 cut(s)	185, 419
Asp700I	GAANNNNTTC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	79, 761
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	4 cut(s)	161, 239, 248, 463
AsuII	TTCGAA	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	3 cut(s)	293, 303, 563
BalI	TGGCCA	1 cut(s)	393
BanII	GRGCYC	3 cut(s)	403, 531, 630
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	3 cut(s)	403, 531, 563
BbvI	GCAGC	2 cut(s)	172, 431
BccI	CCATC	1 cut(s)	617
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	68, 577
BfaI	CTAG	2 cut(s)	200, 488
BfmI	CTRYAG	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	377
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	186, 420
BlsI	GCNGC	2 cut(s)	187, 421
Bme1390I	CCNGG	2 cut(s)	83, 311
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	79, 761
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	83, 311
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	6 cut(s)	305, 337, 612, 644, 677, 709
Bpu14I	TTCGAA	1 cut(s)	607
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	81, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 87, 702
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	3 cut(s)	303, 731, 753
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	81, 309
BseLI	CCNNNNNNNGG	3 cut(s)	15, 87, 702
BseMI	GCAATG	3 cut(s)	303, 731, 753
BseMII	CTCAG	3 cut(s)	330, 588, 665
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	685
BseSI	GKGCMC	3 cut(s)	293, 303, 563
BseXI	GCAGC	2 cut(s)	172, 431
BsgI	GTGCAG	1 cut(s)	694
Bsh1236I	CGCG	3 cut(s)	61, 174, 632
BshFI	GGCC	3 cut(s)	80, 330, 393
BsiHKAI	GWGCWC	3 cut(s)	403, 531, 563
BsiSI	CCGG	2 cut(s)	77, 311
BslI	CCNNNNNNNGG	3 cut(s)	15, 87, 702
BsmAI	GTCTC	2 cut(s)	68, 577
BsmBI	CGTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	3 cut(s)	80, 330, 393
Bso31I	GGTCTC	1 cut(s)	577
Bsp119I	TTCGAA	1 cut(s)	607
Bsp1286I	GDGCHC	6 cut(s)	293, 303, 403, 531, 563, 630
Bsp143I	GATC	3 cut(s)	162, 253, 712
BspACI	CCGC	2 cut(s)	172, 632
BspANI	GGCC	3 cut(s)	80, 330, 393
BspCNI	CTCAG	3 cut(s)	331, 589, 664
BspFNI	CGCG	3 cut(s)	61, 174, 632
BspLI	GGNNCC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	607
BspTNI	GGTCTC	1 cut(s)	577
BsrDI	GCAATG	3 cut(s)	303, 731, 753
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	81, 309
BssMI	GATC	3 cut(s)	162, 253, 712
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	3 cut(s)	295, 705, 756
Bst6I	CTCTTC	1 cut(s)	733
BstBI	TTCGAA	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	78, 630, 738
BstDEI	CTNAG	3 cut(s)	339, 597, 651
BstFNI	CGCG	3 cut(s)	61, 174, 632
BstKTI	GATC	3 cut(s)	165, 256, 715
BstMAI	GTCTC	2 cut(s)	68, 577
BstMBI	GATC	3 cut(s)	162, 253, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 116
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	81, 309
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	3 cut(s)	293, 303, 563
BstUI	CGCG	3 cut(s)	61, 174, 632
BstV1I	GCAGC	2 cut(s)	172, 431
BstV2I	GAAGAC	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	80, 330, 393
BtgZI	GCGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	155, 291
Cac8I	GCNNGC	3 cut(s)	78, 630, 738
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	79, 761
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	136, 316, 706
CviAII	CATG	3 cut(s)	37, 143, 260
CviQI	GTAC	3 cut(s)	136, 316, 706
DdeI	CTNAG	3 cut(s)	339, 597, 651
DpnI	GATC	3 cut(s)	164, 255, 714
DpnII	GATC	3 cut(s)	162, 253, 712
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	733
EarI	CTCTTC	1 cut(s)	733
Ecl136II	GAGCTC	2 cut(s)	401, 529
Eco24I	GRGCYC	3 cut(s)	403, 531, 630
Eco31I	GGTCTC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	761
Eco53kI	GAGCTC	2 cut(s)	401, 529
EcoICRI	GAGCTC	2 cut(s)	401, 529
EcoRII	CCWGG	1 cut(s)	81
EcoT38I	GRGCYC	3 cut(s)	403, 531, 630
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	3 cut(s)	40, 146, 263
FaiI	YATR	8 cut(s)	38, 144, 213, 261, 374, 440, 510, 516
FalI	AAGNNNNNCTT	3 cut(s)	35, 40, 72
FatI	CATG	3 cut(s)	36, 142, 259
Fnu4HI	GCNGC	2 cut(s)	186, 420
FriOI	GRGCYC	3 cut(s)	403, 531, 630
Fsp4HI	GCNGC	2 cut(s)	186, 420
FspBI	CTAG	2 cut(s)	200, 488
GluI	GCNGC	2 cut(s)	186, 420
HaeIII	GGCC	3 cut(s)	80, 330, 393
HapII	CCGG	2 cut(s)	77, 311
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	40, 146, 263
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	4 cut(s)	263, 541, 662, 725
HpaII	CCGG	2 cut(s)	77, 311
HphI	GGTGA	4 cut(s)	161, 239, 248, 463
Hpy166II	GTNNAC	2 cut(s)	493, 561
Hpy188I	TCNGA	5 cut(s)	340, 598, 654, 700, 712
Hpy188III	TCNNGA	2 cut(s)	404, 759
Hpy8I	GTNNAC	2 cut(s)	493, 561
HpyAV	CCTTC	2 cut(s)	117, 611
HpyCH4III	ACNGT	3 cut(s)	295, 705, 756
HpyCH4V	TGCA	6 cut(s)	110, 142, 521, 561, 675, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 116
HpyF3I	CTNAG	3 cut(s)	339, 597, 651
Hsp92II	CATG	3 cut(s)	40, 146, 263
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	162, 253, 712
LmnI	GCTCC	2 cut(s)	116, 434
Lsp1109I	GCAGC	2 cut(s)	172, 431
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	200, 488
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	164, 255, 714
MboI	GATC	3 cut(s)	162, 253, 712
MboII	GAAGA	6 cut(s)	355, 466, 545, 563, 601, 720
MhlI	GDGCHC	6 cut(s)	293, 303, 403, 531, 563, 630
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	8 cut(s)	208, 279, 329, 346, 592, 637, 703, 706
Mox20I	TGGCCA	1 cut(s)	393
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	77, 311
MspR9I	CCNGG	2 cut(s)	83, 311
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	3 cut(s)	61, 174, 632
MwoI	GCNNNNNNNGC	2 cut(s)	77, 116
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	3 cut(s)	162, 253, 712
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	40, 146, 263
NlaIV	GGNNCC	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	152
NspI	RCATGY	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	607
PciI	ACATGT	1 cut(s)	36
PctI	GAATGC	1 cut(s)	615
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	263, 541, 662
PkrI	GCNGC	2 cut(s)	187, 421
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PscI	ACATGT	1 cut(s)	36
Psp124BI	GAGCTC	2 cut(s)	403, 531
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	2 cut(s)	79, 761
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	3 cut(s)	137, 317, 707
RsaNI	GTAC	3 cut(s)	136, 316, 706
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	2 cut(s)	403, 531
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	186, 420
Sau3AI	GATC	3 cut(s)	162, 253, 712
Sau96I	GGNCC	2 cut(s)	79, 761
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	2 cut(s)	83, 311
SduI	GDGCHC	6 cut(s)	293, 303, 403, 531, 563, 630
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	607
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	172, 632
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	2 cut(s)	200, 488
SstI	GAGCTC	2 cut(s)	403, 531
StyD4I	CCNGG	2 cut(s)	81, 309
TaaI	ACNGT	3 cut(s)	295, 705, 756
TaqI	TCGA	5 cut(s)	525, 531, 607, 615, 665
TaqII	GACCGA	1 cut(s)	601
TasI	AATT	1 cut(s)	105
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	263, 541, 662
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	155, 298
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	185, 419
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	720
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	155, 298
VneI	GTGCAC	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	761
XceI	RCATGY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	200, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.