Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009879

Physical Location & Seq

Genomic Coordinates Reverse (-)

3225780 .. 3227720

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05010.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTTACTTGTTCTCCTGATGGCTTAGTCATTGGCCTGGGAACTCCAAGCCAGAATTTATCAGGCACTTTGTCACCAAGCATTGGAAACTTGACAAATCTCCAGCTTGTTACATTTCAGGATAATCATATAACAGGATCGATCCCCGCCGAGCTCGGGAGGCTCCAAAAGCTTCAAACACTTGATCTCTCCAGCAACTTGTTCAATGGAGAAATTCCCAGCACTCTATCACACCTGAAAAGCCTACAATACCTGCGGCTAAACAATAACACTCTCTCTGGGGCAATTCCTTCATCATTTGCTGATATGACCCAGCTGGCATTTCTGGACATGTCTTATAATAATTTGAGTGGTCCGGTCCCAAGGTTTCCCGCTAAAACATTCAACGTTGTGGCAAACCCTCTGATATGTGCCACAGGAAAGGAGCAAGACTGCTCCGGCACGATACGACCGCCGCTATCTTTGCCCTTGAATAATTCAACAAATTCTCAAGCCGCCGGGAGACCTAGGAGCCACAAAATCGCCTTAGCATTTGCCTCGAGCCTTGGCTGCATCTGCCTTCTAATTCTTGGTTTTGGTTTCCTTCTTTGGTGGAGGCAGAAACACAACAAGCAAATATTCTTAGATGTTACCGAACAACATCACGAAGAAGTTTGCCTTGGAAACTTGCGGTCGTTTCACTTCAGAGAACTTCAAGCAGCAACTCACAACTTCAGCAGCAAAAACTTGGTTGGTAAGGGTGGTTTCGGGAATGTCTACAAAGGATATCTCCGTGATGGTACAGTAATAGCAGTCAAAAGGCTCAAGGACACGAATACCATAGGTGGGGAAATCCAATTTCAGACCGAACTTGAGATGATCGAGCCTCGCTGTGCACAGGAACCTCCTGCGGCTTTATGGTTTTTGCATGACAGCCAAAGAGAGGCTTTTGGTTTATCCTTACATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

317

Amino Acids

34.53

Weight (kDa)

8.17

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25560 AT3G25560 AT3G25560
fragaria_vesca	FvH4_4g28660 FvH4_4g28660 FvH4_4g28660
malus_domestica	MD13G1052700.v1.1 MD16G1057000.v1.1
prunus_persica	Prupe.1G299300_v2.0.a1
pyrus_communis	pycom13g04720 pycom16g05010
rosa_chinensis	RchiOBHm_Chr4g0436771
rosa_laevigata	RLG00000006497
rosa_multiflora	Rmu_sc0001837.1_g000004
rosa_roxburghii	Rroxscaffold_5G00377840
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350400 Rh4BG359300 Rh4CG373600 Rh4DG353300
rosa_wichuraiana	Rw4G030660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	756
AciI	CCGC	8 cut(s)	147, 256, 372, 452, 455, 495, 670, 890
AclI	AACGTT	1 cut(s)	387
AclWI	GGATC	2 cut(s)	136, 145
AcsI	RAATTY	3 cut(s)	55, 213, 484
AcuI	CTGAAG	2 cut(s)	667, 697
AfaI	GTAC	1 cut(s)	781
AfiI	CCNNNNNNNGG	4 cut(s)	83, 156, 825, 922
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	6 cut(s)	176, 205, 385, 472, 480, 695
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	4 cut(s)	106, 154, 172, 316
AluI	AGCT	4 cut(s)	106, 154, 172, 316
Alw21I	GWGCWC	2 cut(s)	156, 877
Alw26I	GTCTC	1 cut(s)	496
Alw44I	GTGCAC	1 cut(s)	873
AlwI	GGATC	2 cut(s)	136, 145
Ama87I	CYCGRG	2 cut(s)	155, 538
AoxI	GGCC	1 cut(s)	34
ApaLI	GTGCAC	1 cut(s)	873
ApeKI	GCWGC	3 cut(s)	549, 698, 717
ApoI	RAATTY	3 cut(s)	55, 213, 484
AspA2I	CCTAGG	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	353, 358
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	66
AvaI	CYCGRG	2 cut(s)	155, 538
AvaII	GGWCC	2 cut(s)	353, 358
AvrII	CCTAGG	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	156, 877
BbvI	GCAGC	3 cut(s)	536, 710, 729
BccI	CCATC	2 cut(s)	14, 770
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	7 cut(s)	257, 455, 495, 550, 699, 718, 891
BlnI	CCTAGG	1 cut(s)	506
BlsI	GCNGC	7 cut(s)	258, 456, 496, 551, 700, 719, 892
Bme1390I	CCNGG	2 cut(s)	38, 499
Bme18I	GGWCC	2 cut(s)	353, 358
BmeT110I	CYCGRG	2 cut(s)	155, 538
BmgT120I	GGNCC	2 cut(s)	353, 358
BmiI	GGNNCC	4 cut(s)	164, 360, 512, 882
BmrFI	CCNGG	2 cut(s)	38, 499
BmsI	GCATC	1 cut(s)	561
BpmI	CTGGAG	2 cut(s)	86, 175
Bpu10I	CCTNAGC	1 cut(s)	526
BpuEI	CTTGAG	3 cut(s)	474, 788, 872
BpuMI	CCSGG	1 cut(s)	499
Bsa29I	ATCGAT	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	5 cut(s)	37, 362, 506, 544, 658
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 156, 825, 922
BseBI	CCWGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	140
BseDI	CCNNGG	5 cut(s)	37, 362, 506, 544, 658
BseLI	CCNNNNNNNGG	4 cut(s)	83, 156, 825, 922
BseSI	GKGCMC	1 cut(s)	877
BseXI	GCAGC	3 cut(s)	536, 710, 729
BseYI	CCCAGC	2 cut(s)	218, 312
Bsh1285I	CGRYCG	2 cut(s)	452, 674
BshFI	GGCC	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	140
BsiEI	CGRYCG	2 cut(s)	452, 674
BsiHKAI	GWGCWC	2 cut(s)	156, 877
BsiHKCI	CYCGRG	2 cut(s)	155, 538
BsiSI	CCGG	3 cut(s)	356, 438, 498
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	4 cut(s)	83, 156, 825, 922
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	36
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	2 cut(s)	155, 538
Bsp1286I	GDGCHC	2 cut(s)	156, 877
Bsp143I	GATC	4 cut(s)	137, 141, 184, 858
BspACI	CCGC	8 cut(s)	147, 256, 372, 452, 455, 495, 670, 890
BspANI	GGCC	1 cut(s)	36
BspDI	ATCGAT	1 cut(s)	140
BspLI	GGNNCC	4 cut(s)	164, 360, 512, 882
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	136, 145
BspTNI	GGTCTC	1 cut(s)	496
BssECI	CCNNGG	5 cut(s)	37, 362, 506, 544, 658
BssMI	GATC	4 cut(s)	137, 141, 184, 858
BssT1I	CCWWGG	4 cut(s)	362, 506, 544, 658
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	784
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	25, 526, 622
BstKTI	GATC	4 cut(s)	140, 144, 187, 861
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	4 cut(s)	137, 141, 184, 858
BstMCI	CGRYCG	2 cut(s)	452, 674
BstMWI	GCNNNNNNNGC	5 cut(s)	160, 169, 463, 549, 555
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	36, 497
BstSLI	GKGCMC	1 cut(s)	877
BstV1I	GCAGC	3 cut(s)	536, 710, 729
Bsu15I	ATCGAT	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	318
Cfr13I	GGNCC	2 cut(s)	353, 358
ClaI	ATCGAT	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	780
CviAII	CATG	3 cut(s)	331, 908, 944
CviQI	GTAC	1 cut(s)	780
DdeI	CTNAG	3 cut(s)	25, 526, 622
DpnI	GATC	4 cut(s)	139, 143, 186, 860
DpnII	GATC	4 cut(s)	137, 141, 184, 858
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	4 cut(s)	362, 506, 544, 658
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	767
Eco47I	GGWCC	2 cut(s)	353, 358
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	667, 697
Eco88I	CYCGRG	2 cut(s)	155, 538
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	767
EcoT14I	CCWWGG	4 cut(s)	362, 506, 544, 658
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	4 cut(s)	362, 506, 544, 658
FaeI	CATG	3 cut(s)	334, 911, 947
FalI	AAGNNNNNCTT	4 cut(s)	642, 674, 910, 942
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	3 cut(s)	330, 907, 943
FauI	CCCGC	2 cut(s)	154, 379
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	7 cut(s)	257, 455, 495, 550, 699, 718, 891
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	7 cut(s)	257, 455, 495, 550, 699, 718, 891
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	7 cut(s)	257, 455, 495, 550, 699, 718, 891
GsaI	CCCAGC	2 cut(s)	222, 316
GsuI	CTGGAG	2 cut(s)	86, 175
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	3 cut(s)	356, 438, 498
Hin1II	CATG	3 cut(s)	334, 911, 947
HindIII	AAGCTT	1 cut(s)	170
HpaII	CCGG	3 cut(s)	356, 438, 498
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	757, 875
Hpy188I	TCNGA	3 cut(s)	405, 686, 843
Hpy188III	TCNNGA	6 cut(s)	17, 119, 157, 326, 644, 748
Hpy8I	GTNNAC	2 cut(s)	757, 875
HpyAV	CCTTC	3 cut(s)	300, 569, 593
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	552, 875, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	160, 169, 463, 549, 555
HpyF3I	CTNAG	3 cut(s)	25, 526, 622
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	334, 911, 947
Kzo9I	GATC	4 cut(s)	137, 141, 184, 858
LmnI	GCTCC	4 cut(s)	168, 424, 440, 510
Lsp1109I	GCAGC	3 cut(s)	536, 710, 729
LweI	GCATC	1 cut(s)	561
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	4 cut(s)	4, 72, 109, 628
MalI	GATC	4 cut(s)	139, 143, 186, 860
MboI	GATC	4 cut(s)	137, 141, 184, 858
MboII	GAAGA	1 cut(s)	659
MhlI	GDGCHC	2 cut(s)	156, 877
MluCI	AATT	8 cut(s)	55, 213, 285, 343, 475, 484, 564, 836
MnlI	CCTC	7 cut(s)	153, 411, 547, 588, 876, 894, 916
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	3 cut(s)	356, 438, 498
MspR9I	CCNGG	2 cut(s)	38, 499
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	5 cut(s)	160, 169, 463, 549, 555
NciI	CCSGG	1 cut(s)	499
NdeII	GATC	4 cut(s)	137, 141, 184, 858
NlaIII	CATG	3 cut(s)	334, 911, 947
NlaIV	GGNNCC	4 cut(s)	164, 360, 512, 882
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	538
PciI	ACATGT	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	258, 456, 496, 551, 700, 719, 892
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	36
PspFI	CCCAGC	2 cut(s)	218, 312
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	4 cut(s)	164, 360, 512, 882
PspPI	GGNCC	2 cut(s)	353, 358
PspXI	VCTCGAGB	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	781
RsaNI	GTAC	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	156
SatI	GCNGC	7 cut(s)	257, 455, 495, 550, 699, 718, 891
Sau3AI	GATC	4 cut(s)	137, 141, 184, 858
Sau96I	GGNCC	2 cut(s)	353, 358
ScrFI	CCNGG	2 cut(s)	38, 499
SduI	GDGCHC	2 cut(s)	156, 877
SfaNI	GCATC	1 cut(s)	561
Sfr274I	CTCGAG	1 cut(s)	538
SinI	GGWCC	2 cut(s)	353, 358
SlaI	CTCGAG	1 cut(s)	538
SmlI	CTYRAG	4 cut(s)	489, 538, 803, 851
SmoI	CTYRAG	4 cut(s)	489, 538, 803, 851
Sse9I	AATT	8 cut(s)	55, 213, 285, 343, 475, 484, 564, 836
SsiI	CCGC	8 cut(s)	147, 256, 372, 452, 455, 495, 670, 890
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	36, 497
StyI	CCWWGG	4 cut(s)	362, 506, 544, 658
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	3 cut(s)	140, 539, 861
TaqII	GACCGA	1 cut(s)	860
TasI	AATT	8 cut(s)	55, 213, 285, 343, 475, 484, 564, 836
TauI	GCSGC	4 cut(s)	259, 457, 497, 893
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	3 cut(s)	549, 698, 717
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	1 cut(s)	761
Van91I	CCANNNNNTGG	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	873
VpaK11BI	GGWCC	2 cut(s)	353, 358
XapI	RAATTY	3 cut(s)	55, 213, 484
XceI	RCATGY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	538
XmaJI	CCTAGG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.