Rorug04G0296000
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
46981812 .. 46985429
3618 bp
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UTR
Exon/CDS
Intron
Rorug04G0296000.1

Sequence Viewer

Length: 285 bp
ATGTTCTTGGCTGGAAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTAGGGACTGAGAAAAGTAGTCCTCACTTAGGAAGCATAGATCTATCAGGGCAGAAATGGTTAGGAAGTAGAGACGATACGTCGTCTGCAGAAGGCAAGCAGAAAACAAGTAGTGAAGTCTTTGACCATTGCGCAATAGATACACTGCTGATTTCTCATGGGACAAGTACACTCTTCATGAAGGACCTTTTGAGGAGGTCGGAGCAACGTGTTGAAACTTTTATCAATGGGGTAGATTAG

Protein Analysis

94

Amino Acids

10.38

Weight (kDa)

5.88

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 178
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 1 cut(s) 260
AhdI GACNNNNNGTC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 229
AvaII GGWCC 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 132
BglII AGATCT 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 229
BmeRI GACNNNNNGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 253
BslFI GGGAC 2 cut(s) 64, 220
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 64, 220
Bsp143I GATC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 46
BspHI TCATGA 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 172
BssMI GATC 1 cut(s) 85
Bst6I CTCTTC 3 cut(s) 27, 32, 224
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 54, 73
BstENI CCTNNNNNAGG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 143
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 203, 223
CviJI RGCY 2 cut(s) 11, 23
CviKI_1 RGCY 2 cut(s) 11, 23
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 54, 73
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DriI GACNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 3 cut(s) 27, 32, 224
Eam1105I GACNNNNNGTC 1 cut(s) 124
EarI CTCTTC 3 cut(s) 27, 32, 224
Eco47I GGWCC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 2 cut(s) 206, 226
FaiI YATR 3 cut(s) 83, 204, 224
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 2 cut(s) 64, 220
FatI CATG 2 cut(s) 202, 222
FspI TGCGCA 1 cut(s) 178
GlaI GCGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 179
Hin1II CATG 2 cut(s) 206, 226
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 131, 220
HpyCH4IV ACGT 2 cut(s) 125, 253
HpyCH4V TGCA 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 54, 73
HpySE526I ACGT 2 cut(s) 125, 253
Hsp92II CATG 2 cut(s) 206, 226
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 1 cut(s) 78
MaeII ACGT 2 cut(s) 125, 253
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 44, 49, 211
MflI RGATCY 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 3 cut(s) 78, 231, 234
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 206, 226
NsbI TGCGCA 1 cut(s) 178
PagI TCATGA 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 229
SetI ASST 4 cut(s) 128, 234, 245, 256
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 229
TaiI ACGT 2 cut(s) 128, 256
TatI WGTACW 1 cut(s) 212
TscAI CASTG 1 cut(s) 195
TspDTI ATGAA 2 cut(s) 211, 239
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 229
XagI CCTNNNNNAGG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.