Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001837.1

Orthogroup ID

OG0007383

Physical Location & Seq

Genomic Coordinates Reverse (-)

19154 .. 19624

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001837.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgaaagagatacttgttgttcttcgcttgattacaaactctcctaatttaaaggaacttcaactctcgggatcctctttaacatcaatggaatcaccggatttggatttctgggagaaagaaggcccttcagattgcacattccacaaacttaaagttgtgaagatgacagatatgtccggactgccacatgagatggaattcatcaaatttttgttgagaaaatcaccggtgcttgagatcatgagtattatgccttgtgtgtttgttaccatggagtcgcgtttgataatagtcacggagttgcttagttttacaagggcgtctcctaaagcaggaattgtattcatccaagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

119

Amino Acids

13.5

Weight (kDa)

5.69

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13570 AT1G13570 AT1G13570
fragaria_vesca	FvH4_4g28670 FvH4_4g28670 FvH4_4g28670 FvH4_4g28670
malus_domestica	MD13G1052800.v1.1 MD16G1051800.v1.1
prunus_persica	Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1
pyrus_communis	pycom13g04730 pycom16g04550
rosa_chinensis	RchiOBHm_Chr4g0436781
rosa_laevigata	RLG00000006496
rosa_multiflora	Rmu_co8098618.1_g000001 Rmu_sc0001837.1_g000005
rosa_roxburghii	Rroxscaffold_5G00377850
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350500 Rh4BG359400 Rh4CG373700 Rh4DG353400
rosa_wichuraiana	Rw4G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	175
AccII	CGCG	1 cut(s)	283
AccIII	TCCGGA	1 cut(s)	179
AclWI	GGATC	2 cut(s)	66, 79
AcsI	RAATTY	2 cut(s)	200, 209
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	2 cut(s)	66, 79
Ama87I	CYCGRG	1 cut(s)	67
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	1 cut(s)	124
ApoI	RAATTY	2 cut(s)	200, 209
AsiGI	ACCGGT	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	87, 219
AvaI	CYCGRG	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	71
BccI	CCATC	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	3 cut(s)	97, 179, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	229
BseAI	TCCGGA	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	126
BshTI	ACCGGT	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	98, 180, 230
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	330
BsmBI	CGTCTC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	71, 240
Bsp19I	CCATGG	1 cut(s)	273
BspANI	GGCC	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	2 cut(s)	66, 79
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	71, 240
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	273
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	74, 243
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	2 cut(s)	71, 240
BstUI	CGCG	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	348
CciI	TCATGA	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	312
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	3 cut(s)	191, 244, 274
CviJI	RGCY	1 cut(s)	126
CviKI_1	RGCY	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	73, 242
DpnII	GATC	2 cut(s)	71, 240
DraI	TTTAAA	1 cut(s)	51
DrdI	GACNNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	3 cut(s)	194, 247, 277
FaiI	YATR	5 cut(s)	176, 192, 245, 254, 275
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	3 cut(s)	190, 243, 273
FokI	GGATG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	3 cut(s)	98, 180, 230
HgaI	GACGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	194, 247, 277
HinfI	GANTC	2 cut(s)	92, 278
HpaII	CCGG	3 cut(s)	98, 180, 230
HphI	GGTGA	2 cut(s)	87, 219
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	3 cut(s)	69, 180, 244
HpyAV	CCTTC	2 cut(s)	116, 138
HpyCH4V	TGCA	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	308
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	3 cut(s)	194, 247, 277
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	71, 240
LpnPI	CCDG	5 cut(s)	97, 111, 193, 243, 321
MaeIII	GTNAC	2 cut(s)	268, 295
MalI	GATC	2 cut(s)	73, 242
MboI	GATC	2 cut(s)	71, 240
MboII	GAAGA	2 cut(s)	14, 175
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	4 cut(s)	46, 200, 209, 339
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	1 cut(s)	85
MroI	TCCGGA	1 cut(s)	179
MseI	TTAA	3 cut(s)	50, 80, 153
MspI	CCGG	3 cut(s)	98, 180, 230
MvnI	CGCG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	71, 240
NlaIII	CATG	3 cut(s)	194, 247, 277
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	295
PagI	TCATGA	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	92
PinAI	ACCGGT	1 cut(s)	229
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	50, 80, 153
Sau3AI	GATC	2 cut(s)	71, 240
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	287
SgrAI	CRCCGGYG	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	4 cut(s)	46, 200, 209, 339
StyI	CCWWGG	1 cut(s)	273
TasI	AATT	4 cut(s)	46, 200, 209, 339
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	50, 80, 153
Tru9I	TTAA	3 cut(s)	50, 80, 153
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	17, 193, 337
TspGWI	ACGGA	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	2 cut(s)	200, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.