Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007383

Physical Location & Seq

Genomic Coordinates Reverse (-)

4642124 .. 4644422

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTGAATCTCCAGATTTCATAAGCGATCTACCTCAAAGCATTATTGAGAATATCCTTACTCGGCTTTCGATTAGAGATGCAATAAGAACAAGTGTATTATCTAGCAAATGGAGATATAAATGGTCTACACTCACTGATCTTGTCTTTGATGAGAAATGTGTTTCTCCTTCTAATGACCGTTGTGTTGTTGAGACTAATCTTGTGAGATTCATTACTGGAGTGCTTCTCCTTCACCAAGGACCTATCCACAAGTTTCAGCTCTCTACTTCTTTCAAACAATGTCGTCCAGATATTGATCAGTGGTTGCTTTTTCTTTCGAGGAACGGGATTAAGGAGCTTGTTCTTAAGTTAGGTGAAGGAGAATTCAGGGTTCCTGCATGTCTCTTTAACTGTTTGAAATTGACCTGTTTGGAGTTATGTCATTGTGAGTTTGATCCGCCTCAGTATTTCAAAGGGTTTTCGTATCTGAAGAGTTTAAACCTTCACCAGATCCTTGTTGCTCCTGAGGTTATTGAAAGTCTGATCTCAGGATGTCCGCTTCTCGAGTTCCTGTCTTTGTCTTACTTTGACAGTTTGGTTTTGAGTATATCAGCTCCGAATCTCATGTACTTGTATCTAGACGGCGAATTCAAAGACATTTTCCTCGAGAATACGCCCAAGCTAGTTGCAATATCGGTTTCAATGTACATGCATGAGGATGTTACTGATTTTGAGCAGAGTTCGGATTATAATCTCGTTAAGTTCCTTGGTGGTGTGCCCCTTCTTGAGAAGCTCGTCGGTTATATCTACTTCACAAAGTACTTGAGTATAGGAGATGACCCGGGAAGGCTTCCACTTACTTACATACATCTTAAAACTATAGAACTTTACCAAGTATGCTTTGAAGATGCCGATGAGGTGCTAGTTCTTCTTCGTTTGGTCACTCACTCTCCCAACCTTAAAGAGCTCAAAGTTTCGGCTTCACCAGTCCAACCATTTCCTCTTGAAGAAGAAGGTTTTGACCTTTTCGAAAGAGATTACTTCGACTACAAACTCCCAAGCCTTGAAAGCGTGAAGATAACAGACGCCTCTGGCATCAGATATGAATTGGAATTTATCAGATTCTTGCTGGGAACTTCACCAGTTTTGGAGACAGTCACTGTATCATCAAGTTTATCAGATAAAGATGCGAAAATGGATATGGTTATCGAATTGCTCAGGTATCCACGTGTCTCTCCTCGAGCTCAGCTCCTCTTCCTTCAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

416

Amino Acids

47.6

Weight (kDa)

4.9

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 44	2.8e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	85 - 194	1.1e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	99 - 229	6.2e-17	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13570 AT1G13570 AT1G13570
fragaria_vesca	FvH4_4g28670 FvH4_4g28670 FvH4_4g28670 FvH4_4g28670
malus_domestica	MD13G1052800.v1.1 MD16G1051800.v1.1
prunus_persica	Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1
pyrus_communis	pycom13g04730 pycom16g04550
rosa_chinensis	RchiOBHm_Chr4g0436781
rosa_laevigata	RLG00000006496
rosa_multiflora	Rmu_co8098618.1_g000001 Rmu_sc0001837.1_g000005
rosa_roxburghii	Rroxscaffold_5G00377850
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350500 Rh4BG359400 Rh4CG373700 Rh4DG353400
rosa_wichuraiana	Rw4G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	2 cut(s)	440, 539
AclWI	GGATC	2 cut(s)	431, 487
AcsI	RAATTY	3 cut(s)	365, 629, 1094
AcuI	CTGAAG	1 cut(s)	491
AcvI	CACGTG	1 cut(s)	1211
AcyI	GRCGYC	1 cut(s)	1068
AfaI	GTAC	3 cut(s)	611, 689, 803
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	1210
AluBI	AGCT	8 cut(s)	262, 340, 596, 664, 775, 949, 1226, 1231
AluI	AGCT	8 cut(s)	262, 340, 596, 664, 775, 949, 1226, 1231
Alw21I	GWGCWC	2 cut(s)	951, 1228
Alw26I	GTCTC	4 cut(s)	188, 389, 1127, 1219
AlwI	GGATC	2 cut(s)	431, 487
AlwNI	CAGNNNCTG	1 cut(s)	1142
Ama87I	CYCGRG	4 cut(s)	545, 647, 823, 1221
ApoI	RAATTY	3 cut(s)	365, 629, 1094
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	824, 825
AsuHPI	GGTGA	6 cut(s)	17, 227, 368, 479, 957, 1113
AsuII	TTCGAA	1 cut(s)	1011
AvaI	CYCGRG	4 cut(s)	545, 647, 823, 1221
AvaII	GGWCC	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	762
BanII	GRGCYC	2 cut(s)	951, 1228
BbrPI	CACGTG	1 cut(s)	1211
Bbv12I	GWGCWC	2 cut(s)	951, 1228
BceAI	ACGGC	1 cut(s)	640
BciVI	GTATCC	1 cut(s)	1215
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	824, 825
BcoDI	GTCTC	4 cut(s)	188, 389, 1127, 1219
BfaI	CTAG	4 cut(s)	105, 620, 665, 905
BfmI	CTRYAG	1 cut(s)	861
BfrI	CTTAAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	1215
BlpI	GCTNAGC	1 cut(s)	1227
BmcAI	AGTACT	1 cut(s)	803
Bme1390I	CCNGG	2 cut(s)	824, 825
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	4 cut(s)	545, 647, 823, 1221
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	2 cut(s)	824, 825
BmsI	GCATC	4 cut(s)	70, 880, 1086, 1159
BplI	GAGNNNNNCTC	4 cut(s)	213, 245, 1215, 1247
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	1199
Bpu1102I	GCTNAGC	1 cut(s)	1227
Bpu14I	TTCGAA	1 cut(s)	1011
BpuEI	CTTGAG	2 cut(s)	788, 826
BpuMI	CCSGG	2 cut(s)	824, 825
BsaAI	YACGTR	1 cut(s)	1211
BsaBI	GATNNNNATC	2 cut(s)	297, 732
BsaHI	GRCGYC	1 cut(s)	1068
BsaJI	CCNNGG	3 cut(s)	238, 748, 823
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bse1I	ACTGG	3 cut(s)	223, 968, 1124
Bse21I	CCTNAGG	1 cut(s)	507
Bse8I	GATNNNNATC	2 cut(s)	297, 732
BseDI	CCNNGG	3 cut(s)	238, 748, 823
BseGI	GGATG	2 cut(s)	539, 706
BseJI	GATNNNNATC	2 cut(s)	297, 732
BseMII	CTCAG	5 cut(s)	458, 498, 543, 1213, 1241
BseNI	ACTGG	3 cut(s)	223, 968, 1124
BseRI	GAGGAG	2 cut(s)	1209, 1223
BseSI	GKGCMC	1 cut(s)	762
BseYI	CCCAGC	1 cut(s)	1111
BsiHKAI	GWGCWC	2 cut(s)	951, 1228
BsiHKCI	CYCGRG	4 cut(s)	545, 647, 823, 1221
BsiSI	CCGG	1 cut(s)	824
BsmAI	GTCTC	4 cut(s)	188, 389, 1127, 1219
BsoBI	CYCGRG	4 cut(s)	545, 647, 823, 1221
Bsp119I	TTCGAA	1 cut(s)	1011
Bsp1286I	GDGCHC	3 cut(s)	762, 951, 1228
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	6 cut(s)	28, 139, 298, 436, 492, 525
Bsp1720I	GCTNAGC	1 cut(s)	1227
BspACI	CCGC	2 cut(s)	440, 539
BspCNI	CTCAG	5 cut(s)	457, 499, 542, 1212, 1240
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	431, 487
BspT104I	TTCGAA	1 cut(s)	1011
BspTI	CTTAAG	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	3 cut(s)	223, 968, 1124
BssECI	CCNNGG	3 cut(s)	238, 748, 823
BssMI	GATC	6 cut(s)	28, 139, 298, 436, 492, 525
BssNI	GRCGYC	1 cut(s)	1068
BssT1I	CCWWGG	2 cut(s)	238, 748
Bst4CI	ACNGT	5 cut(s)	182, 395, 575, 1138, 1144
Bst6I	CTCTTC	2 cut(s)	467, 1241
BstACI	GRCGYC	1 cut(s)	1068
BstAFI	CTTAAG	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	687
BstBAI	YACGTR	1 cut(s)	1211
BstBI	TTCGAA	1 cut(s)	1011
BstDEI	CTNAG	5 cut(s)	444, 507, 529, 1199, 1227
BstF5I	GGATG	2 cut(s)	539, 706
BstKTI	GATC	6 cut(s)	31, 142, 301, 439, 495, 528
BstMAI	GTCTC	4 cut(s)	188, 389, 1127, 1219
BstMBI	GATC	6 cut(s)	28, 139, 298, 436, 492, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	1050
BstNSI	RCATGY	2 cut(s)	384, 694
BstSCI	CCNGG	2 cut(s)	822, 823
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	1 cut(s)	762
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
Bsu36I	CCTNAGG	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	1215
BtsCI	GGATG	2 cut(s)	539, 706
BtsIMutI	CAGTG	3 cut(s)	135, 308, 1140
CaiI	CAGNNNCTG	1 cut(s)	1142
Cfr13I	GGNCC	1 cut(s)	242
Cfr9I	CCCGGG	1 cut(s)	823
CseI	GACGC	1 cut(s)	1076
Csp6I	GTAC	3 cut(s)	610, 688, 802
CviAII	CATG	4 cut(s)	381, 607, 691, 695
CviQI	GTAC	3 cut(s)	610, 688, 802
DdeI	CTNAG	5 cut(s)	444, 507, 529, 1199, 1227
DpnI	GATC	6 cut(s)	30, 141, 300, 438, 494, 527
DpnII	GATC	6 cut(s)	28, 139, 298, 436, 492, 525
DraI	TTTAAA	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	467, 1241
EarI	CTCTTC	2 cut(s)	467, 1241
EciI	GGCGGA	1 cut(s)	429
Ecl136II	GAGCTC	2 cut(s)	949, 1226
Eco130I	CCWWGG	2 cut(s)	238, 748
Eco24I	GRGCYC	2 cut(s)	951, 1228
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	2 cut(s)	949, 1226
Eco57I	CTGAAG	1 cut(s)	491
Eco72I	CACGTG	1 cut(s)	1211
Eco81I	CCTNAGG	1 cut(s)	507
Eco88I	CYCGRG	4 cut(s)	545, 647, 823, 1221
EcoICRI	GAGCTC	2 cut(s)	949, 1226
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	2 cut(s)	365, 629
EcoT14I	CCWWGG	2 cut(s)	238, 748
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	2 cut(s)	951, 1228
ErhI	CCWWGG	2 cut(s)	238, 748
FaeI	CATG	4 cut(s)	384, 610, 694, 698
FatI	CATG	4 cut(s)	380, 606, 690, 694
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	128
FokI	GGATG	2 cut(s)	546, 713
FriOI	GRGCYC	2 cut(s)	951, 1228
FspBI	CTAG	4 cut(s)	105, 620, 665, 905
GsaI	CCCAGC	1 cut(s)	1115
GsuI	CTGGAG	1 cut(s)	240
HapII	CCGG	1 cut(s)	824
HgaI	GACGC	1 cut(s)	1076
Hin1I	GRCGYC	1 cut(s)	1068
Hin1II	CATG	4 cut(s)	384, 610, 694, 698
HinfI	GANTC	4 cut(s)	8, 210, 601, 1104
HpaII	CCGG	1 cut(s)	824
HphI	GGTGA	6 cut(s)	17, 227, 368, 479, 957, 1113
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	7 cut(s)	471, 525, 600, 727, 1082, 1103, 1162
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	8 cut(s)	180, 242, 353, 494, 773, 822, 989, 1250
HpyCH4III	ACNGT	5 cut(s)	182, 395, 575, 1138, 1144
HpyCH4IV	ACGT	1 cut(s)	1210
HpyCH4V	TGCA	4 cut(s)	83, 380, 671, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1050
HpyF3I	CTNAG	5 cut(s)	444, 507, 529, 1199, 1227
HpySE526I	ACGT	1 cut(s)	1210
Hsp92I	GRCGYC	1 cut(s)	1068
Hsp92II	CATG	4 cut(s)	384, 610, 694, 698
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	6 cut(s)	28, 139, 298, 436, 492, 525
LmnI	GCTCC	4 cut(s)	337, 508, 601, 1236
LweI	GCATC	4 cut(s)	70, 880, 1086, 1159
MaeI	CTAG	4 cut(s)	105, 620, 665, 905
MaeII	ACGT	1 cut(s)	1210
MaeIII	GTNAC	3 cut(s)	703, 922, 1138
MalI	GATC	6 cut(s)	30, 141, 300, 438, 494, 527
MboI	GATC	6 cut(s)	28, 139, 298, 436, 492, 525
MboII	GAAGA	8 cut(s)	484, 899, 902, 905, 1001, 1004, 1069, 1228
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	3 cut(s)	762, 951, 1228
MluCI	AATT	6 cut(s)	365, 401, 629, 1088, 1094, 1193
MmeI	TCCRAC	1 cut(s)	997
Mph1103I	ATGCAT	1 cut(s)	696
MseI	TTAA	7 cut(s)	333, 348, 390, 479, 741, 855, 942
MslI	CAYNNNNRTG	1 cut(s)	699
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	1 cut(s)	824
MspR9I	CCNGG	2 cut(s)	824, 825
MssI	GTTTAAAC	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	1050
NciI	CCSGG	2 cut(s)	824, 825
NdeII	GATC	6 cut(s)	28, 139, 298, 436, 492, 525
NlaIII	CATG	4 cut(s)	384, 610, 694, 698
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	922, 1138
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	2 cut(s)	384, 694
NspV	TTCGAA	1 cut(s)	1011
PaeR7I	CTCGAG	3 cut(s)	545, 647, 1221
PfeI	GAWTC	4 cut(s)	8, 210, 601, 1104
PmaCI	CACGTG	1 cut(s)	1211
PmeI	GTTTAAAC	1 cut(s)	480
PmlI	CACGTG	1 cut(s)	1211
Ppu21I	YACGTR	1 cut(s)	1211
PpuMI	RGGWCCY	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	732
Psp124BI	GAGCTC	2 cut(s)	951, 1228
Psp5II	RGGWCCY	1 cut(s)	242
PspCI	CACGTG	1 cut(s)	1211
PspFI	CCCAGC	1 cut(s)	1111
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	242
PspPPI	RGGWCCY	1 cut(s)	242
PspXI	VCTCGAGB	1 cut(s)	1221
PstNI	CAGNNNCTG	1 cut(s)	1142
PsuI	RGATCY	1 cut(s)	492
RsaI	GTAC	3 cut(s)	611, 689, 803
RsaNI	GTAC	3 cut(s)	610, 688, 802
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	2 cut(s)	951, 1228
SaqAI	TTAA	7 cut(s)	333, 348, 390, 479, 741, 855, 942
Sau3AI	GATC	6 cut(s)	28, 139, 298, 436, 492, 525
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	803
ScrFI	CCNGG	2 cut(s)	824, 825
SduI	GDGCHC	3 cut(s)	762, 951, 1228
SfaNI	GCATC	4 cut(s)	70, 880, 1086, 1159
SfcI	CTRYAG	1 cut(s)	861
Sfr274I	CTCGAG	3 cut(s)	545, 647, 1221
SfuI	TTCGAA	1 cut(s)	1011
SinI	GGWCC	1 cut(s)	242
SlaI	CTCGAG	3 cut(s)	545, 647, 1221
SmaI	CCCGGG	1 cut(s)	825
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	6 cut(s)	347, 545, 647, 767, 805, 1221
SmoI	CTYRAG	6 cut(s)	347, 545, 647, 767, 805, 1221
Sse9I	AATT	6 cut(s)	365, 401, 629, 1088, 1094, 1193
SsiI	CCGC	2 cut(s)	440, 539
SspMI	CTAG	4 cut(s)	105, 620, 665, 905
SstI	GAGCTC	2 cut(s)	951, 1228
StyD4I	CCNGG	2 cut(s)	822, 823
StyI	CCWWGG	2 cut(s)	238, 748
TaaI	ACNGT	5 cut(s)	182, 395, 575, 1138, 1144
TaiI	ACGT	1 cut(s)	1213
TaqI	TCGA	8 cut(s)	71, 320, 546, 648, 1011, 1026, 1191, 1222
TasI	AATT	6 cut(s)	365, 401, 629, 1088, 1094, 1193
TatI	WGTACW	3 cut(s)	609, 687, 801
TfiI	GAWTC	4 cut(s)	8, 210, 601, 1104
Tru1I	TTAA	7 cut(s)	333, 348, 390, 479, 741, 855, 942
Tru9I	TTAA	7 cut(s)	333, 348, 390, 479, 741, 855, 942
TscAI	CASTG	3 cut(s)	142, 308, 1147
TseFI	GTSAC	2 cut(s)	922, 1138
Tsp45I	GTSAC	2 cut(s)	922, 1138
TspDTI	ATGAA	3 cut(s)	10, 202, 1101
TspMI	CCCGGG	1 cut(s)	823
TspRI	CASTG	3 cut(s)	142, 308, 1147
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	3 cut(s)	365, 629, 1094
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	2 cut(s)	384, 694
XhoI	CTCGAG	3 cut(s)	545, 647, 1221
XmaI	CCCGGG	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	4 cut(s)	105, 620, 665, 905
ZrmI	AGTACT	1 cut(s)	803
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.