Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007383

Physical Location & Seq

Genomic Coordinates Reverse (-)

51893082 .. 51893995

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG359400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACTGATGAAAATGCTGAGAACTCTGAGCAAAGTTCAAATTGCAAGTTTATCAAGTTTCTTGGCGGCATACCACGCCTTGAGAGGCTTGTTGGGCATATCTACTTTACTAAGTATTTGAGTATAGGTAAAGACCCGGGAGTCCTTCCAATTACATATAACCATCTAAAGATTATTGAATTATATCAAGTGAGTTTTGAAGATATGAAAGAGATACTTGTTGTTCTTCGCTTGATTACAAACTCTCCTAATTTAAAGGAACTTCAACTCTCGGGATCCTCTTTAACATCAATGGAATCACCGGATTTGGATTTCTGGGAGAAAGAAGGCCCTTCAGATTGCACATTCCACAAACTTAAAAGCTGGGCTTCTGTGTTGACATTGTATACAAAATTACATGTTTGGTTCATACTGTTCTTCCTCCTGAACGGACACTGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

147

Amino Acids

17.0

Weight (kDa)

5.93

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13570 AT1G13570 AT1G13570
fragaria_vesca	FvH4_4g28670 FvH4_4g28670 FvH4_4g28670 FvH4_4g28670
malus_domestica	MD13G1052800.v1.1 MD16G1051800.v1.1
prunus_persica	Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1
pyrus_communis	pycom13g04730 pycom16g04550
rosa_chinensis	RchiOBHm_Chr4g0436781
rosa_laevigata	RLG00000006496
rosa_multiflora	Rmu_co8098618.1_g000001 Rmu_sc0001837.1_g000005
rosa_roxburghii	Rroxscaffold_5G00377850
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350500 Rh4BG359400 Rh4CG373700 Rh4DG353400
rosa_wichuraiana	Rw4G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	2 cut(s)	270, 283
AcuI	CTGAAG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	39, 179, 200, 266
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
AlwI	GGATC	2 cut(s)	270, 283
Ama87I	CYCGRG	2 cut(s)	136, 271
AoxI	GGCC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	2 cut(s)	137, 138
AsuHPI	GGTGA	1 cut(s)	291
AvaI	CYCGRG	2 cut(s)	136, 271
BamHI	GGATCC	1 cut(s)	275
BccI	CCATC	1 cut(s)	171
BcnI	CCSGG	2 cut(s)	137, 138
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	137, 138
BmeT110I	CYCGRG	2 cut(s)	136, 271
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	137, 138
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	137, 138
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bse1I	ACTGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	9, 18
BseNI	ACTGG	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	363
BshFI	GGCC	1 cut(s)	330
BsiHKCI	CYCGRG	2 cut(s)	136, 271
BsiSI	CCGG	2 cut(s)	137, 302
BsnI	GGCC	1 cut(s)	330
BsoBI	CYCGRG	2 cut(s)	136, 271
Bsp143I	GATC	1 cut(s)	275
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	10, 19
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	270, 283
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	275
BssNAI	GTATAC	1 cut(s)	387
Bst1107I	GTATAC	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	18, 27, 111
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 94
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	135, 136
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BstZ17I	GTATAC	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	329
Cfr9I	CCCGGG	1 cut(s)	136
CviAII	CATG	1 cut(s)	398
CviJI	RGCY	4 cut(s)	88, 330, 363, 368
CviKI_1	RGCY	4 cut(s)	88, 330, 363, 368
DdeI	CTNAG	3 cut(s)	18, 27, 111
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
DraI	TTTAAA	1 cut(s)	255
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	2 cut(s)	136, 271
EcoO109I	RGGNCCY	1 cut(s)	329
FaeI	CATG	1 cut(s)	401
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 352, 384
FatI	CATG	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	67
GsaI	CCCAGC	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	137, 302
Hin1II	CATG	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	141, 296
HpaII	CCGG	2 cut(s)	137, 302
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	378, 387
Hpy188I	TCNGA	2 cut(s)	28, 337
Hpy188III	TCNNGA	2 cut(s)	273, 424
Hpy8I	GTNNAC	2 cut(s)	378, 387
HpyAV	CCTTC	3 cut(s)	155, 320, 342
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4V	TGCA	2 cut(s)	45, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 94
HpyF3I	CTNAG	3 cut(s)	18, 27, 111
Hsp92II	CATG	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	275
LpnPI	CCDG	6 cut(s)	150, 301, 315, 349, 421, 437
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	212, 218, 409
MflI	RGATCY	1 cut(s)	275
MluCI	AATT	5 cut(s)	40, 150, 179, 250, 392
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	3 cut(s)	78, 289, 431
MseI	TTAA	3 cut(s)	254, 284, 357
MspI	CCGG	2 cut(s)	137, 302
MspR9I	CCNGG	2 cut(s)	137, 138
MwoI	GCNNNNNNNGC	2 cut(s)	75, 94
NciI	CCSGG	2 cut(s)	137, 138
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	401
PciI	ACATGT	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PscI	ACATGT	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	254, 284, 357
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	137, 138
SetI	ASST	2 cut(s)	130, 365
SmaI	CCCGGG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	5 cut(s)	40, 150, 179, 250, 392
SsiI	CCGC	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	135, 136
TaaI	ACNGT	1 cut(s)	414
TasI	AATT	5 cut(s)	40, 150, 179, 250, 392
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	254, 284, 357
Tru9I	TTAA	3 cut(s)	254, 284, 357
TscAI	CASTG	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	24, 221, 397
TspGWI	ACGGA	1 cut(s)	444
TspMI	CCCGGG	1 cut(s)	136
TspRI	CASTG	1 cut(s)	440
XceI	RCATGY	1 cut(s)	401
XmaI	CCCGGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.