Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007383

Physical Location & Seq

Genomic Coordinates Reverse (-)

57403339 .. 57405631

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCGAATGGGCGATAAACCGGATCTTGATTTGATAAGCAATCTGCCACAGAGCATTATAGAGAGCATTCTCACGTGTTTGCCAATAGGAGATGCTATAAGAACTAGCTGCTTGTCAAGGAAATGGAGATACAAATGGACTGCACTCACTCATCTTGTATTCGACGAAAAATGTGTGGCTGAATCTGGTGATCAAGTAGTTGTCACAAAAAGCCTTATCAATTTTATAACTCGAGCTCTCTTTCTTCACCAAGGCCCTATTCACAAGTTCCAGGTCTGTACTTCGTACTTGCAGAGCTGCCCGGATATAGATCAATGGATACTTTTCCTTTCGAGGAATGGCATCAAAGAATTGGTTCTTGAATTGGGAGAAGAGGGTGAGTGGTTTAGGCTGCCTTGGTGTCTTTTTTATTGTGAAAAGCTGACCCGTTTGGACCTATATCGCTGCGAGTTGGATCCGGCTCCTAGTTTTAAAGGATTTTCATGTTTGAAGAGCCTCAATCTTCATCAAGTTTTGGTTGCTCCTGAGGCAATTGAAAGTCTTATTTCTAGTTGCCCGCTACTCGAGACCTTGTCTTTGGCATACTTTGATAGCCTAGCTTTAAACATCCGTGCTCCAAATCTTAAGTACTTATGTCTTGAAGGTGAGTTTAAGGACATATCTCTTGAAAATACTCCACTATTGGTTGATTTATCTGTTGCTTTGTACATGACTGATGAAAATGCTGAGAACTCTGAGCAAAGTTCAAATTGCAAGTTTATCAAGTTTCTTGGCGGCATACCACGCCTTGAGAGGCTTATTGGGCATATCTACTTTACTAAGGTAATACAAGATGCTTTTGTTTGTTCATTCTTACTTTTGTTTTCAAGTGTACATACCATAGCTACATTTATGTTTCATTCTTATTTCTGTGTACTTTTTTTTTGTTTCAAGTATTTGAGTATAGGTAAAGACCCGGGAGTCCTTCCAATTACATATAACCATCTAAAGATTATTGAATTATATCAAGTGAGTTTTGAAGATATGAAAGAGATACTTGTTGTTCTTCGCTTGATTACAAACTCTCCTAATTTAAAGGAACTTCAACTCTCGGTAAGCTATTGTGAATATGTTATCCTTTGTTTTTGCATGTGCTTTACTCATAGCTATTCTAGTTTTCAGCTTTACCCTTCAGTTAATAGTAAAGATTACTGCCAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

400

Amino Acids

45.92

Weight (kDa)

5.54

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	12 - 47	4.8e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	91 - 200	6.5e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	103 - 258	5.8e-19	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13570 AT1G13570 AT1G13570
fragaria_vesca	FvH4_4g28670 FvH4_4g28670 FvH4_4g28670 FvH4_4g28670
malus_domestica	MD13G1052800.v1.1 MD16G1051800.v1.1
prunus_persica	Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1
pyrus_communis	pycom13g04730 pycom16g04550
rosa_chinensis	RchiOBHm_Chr4g0436781
rosa_laevigata	RLG00000006496
rosa_multiflora	Rmu_co8098618.1_g000001 Rmu_sc0001837.1_g000005
rosa_roxburghii	Rroxscaffold_5G00377850
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350500 Rh4BG359400 Rh4CG373700 Rh4DG353400
rosa_wichuraiana	Rw4G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AasI	GACNNNNNNGTC	1 cut(s)	959
AciI	CCGC	2 cut(s)	557, 774
AclWI	GGATC	3 cut(s)	30, 449, 462
AcuI	CTGAAG	1 cut(s)	1155
AcvI	CACGTG	1 cut(s)	75
AfaI	GTAC	6 cut(s)	280, 287, 629, 707, 873, 915
AflII	CTTAAG	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	9 cut(s)	108, 236, 297, 421, 599, 884, 1098, 1146, 1162
AluI	AGCT	9 cut(s)	108, 236, 297, 421, 599, 884, 1098, 1146, 1162
Alw21I	GWGCWC	2 cut(s)	238, 616
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	3 cut(s)	30, 449, 462
Ama87I	CYCGRG	3 cut(s)	231, 563, 955
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	4 cut(s)	108, 297, 391, 444
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	254, 433
AsuC2I	CCSGG	3 cut(s)	302, 956, 957
AsuHPI	GGTGA	4 cut(s)	200, 239, 389, 656
AvaI	CYCGRG	3 cut(s)	231, 563, 955
AvaII	GGWCC	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	525
BamHI	GGATCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	238
BbrPI	CACGTG	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	238, 616
BbvI	GCAGC	4 cut(s)	95, 284, 378, 431
BccI	CCATC	1 cut(s)	990
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	3 cut(s)	302, 956, 957
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	5 cut(s)	105, 465, 549, 596, 1152
BfrI	CTTAAG	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
BlsI	GCNGC	5 cut(s)	110, 299, 393, 446, 776
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	4 cut(s)	272, 302, 956, 957
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	3 cut(s)	231, 563, 955
BmgT120I	GGNCC	2 cut(s)	254, 433
BmiI	GGNNCC	2 cut(s)	456, 462
BmrFI	CCNGG	4 cut(s)	272, 302, 956, 957
BmsI	GCATC	3 cut(s)	82, 351, 823
BpuEI	CTTGAG	1 cut(s)	809
BpuMI	CCSGG	3 cut(s)	302, 956, 957
BsaAI	YACGTR	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	3 cut(s)	250, 395, 955
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	1048, 1078
Bse21I	CCTNAGG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	250, 395, 955
BseGI	GGATG	1 cut(s)	606
BseJI	GATNNNNATC	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	516, 717, 726
BseXI	GCAGC	4 cut(s)	95, 284, 378, 431
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	238, 616
BsiHKCI	CYCGRG	3 cut(s)	231, 563, 955
BsiSI	CCGG	4 cut(s)	20, 302, 458, 956
BsmAI	GTCTC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	560
BsoBI	CYCGRG	3 cut(s)	231, 563, 955
Bsp1286I	GDGCHC	2 cut(s)	238, 616
Bsp1407I	TGTACA	2 cut(s)	705, 871
Bsp143I	GATC	4 cut(s)	22, 190, 310, 454
BspACI	CCGC	2 cut(s)	557, 774
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	3 cut(s)	517, 718, 727
BspLI	GGNNCC	2 cut(s)	456, 462
BspPI	GGATC	3 cut(s)	30, 449, 462
BspQI	GCTCTTC	1 cut(s)	485
BspTI	CTTAAG	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	560
BsrGI	TGTACA	2 cut(s)	705, 871
BssECI	CCNNGG	3 cut(s)	250, 395, 955
BssMI	GATC	4 cut(s)	22, 190, 310, 454
BssT1I	CCWWGG	2 cut(s)	250, 395
Bst2UI	CCWGG	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	366, 485
BstAFI	CTTAAG	1 cut(s)	623
BstAUI	TGTACA	2 cut(s)	705, 871
BstBAI	YACGTR	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	4 cut(s)	525, 726, 735, 819
BstF5I	GGATG	1 cut(s)	606
BstKTI	GATC	4 cut(s)	25, 193, 313, 457
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	4 cut(s)	22, 190, 310, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	1132
BstSCI	CCNGG	4 cut(s)	270, 300, 954, 955
BstV1I	GCAGC	4 cut(s)	95, 284, 378, 431
BstX2I	RGATCY	2 cut(s)	22, 454
BstYI	RGATCY	2 cut(s)	22, 454
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	606
Cac8I	GCNNGC	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	254, 433
Cfr9I	CCCGGG	1 cut(s)	955
Csp6I	GTAC	6 cut(s)	279, 286, 628, 706, 872, 914
CviAII	CATG	3 cut(s)	483, 709, 1129
CviQI	GTAC	6 cut(s)	279, 286, 628, 706, 872, 914
DdeI	CTNAG	4 cut(s)	525, 726, 735, 819
DpnI	GATC	4 cut(s)	24, 192, 312, 456
DpnII	GATC	4 cut(s)	22, 190, 310, 454
DraI	TTTAAA	3 cut(s)	472, 603, 1074
DrdI	GACNNNNNNGTC	1 cut(s)	959
DseDI	GACNNNNNNGTC	1 cut(s)	959
Eam1104I	CTCTTC	2 cut(s)	366, 485
EarI	CTCTTC	2 cut(s)	366, 485
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	250, 395
Eco24I	GRGCYC	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	1155
Eco72I	CACGTG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	3 cut(s)	231, 563, 955
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	250, 395
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	2 cut(s)	250, 395
FaeI	CATG	3 cut(s)	486, 712, 1132
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FatI	CATG	3 cut(s)	482, 708, 1128
FauI	CCCGC	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
FokI	GGATG	1 cut(s)	593
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
FspBI	CTAG	5 cut(s)	105, 465, 549, 596, 1152
GluI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	4 cut(s)	20, 302, 458, 956
Hin1II	CATG	3 cut(s)	486, 712, 1132
HinfI	GANTC	2 cut(s)	182, 960
HpaII	CCGG	4 cut(s)	20, 302, 458, 956
HphI	GGTGA	4 cut(s)	200, 239, 389, 656
Hpy166II	GTNNAC	2 cut(s)	872, 914
Hpy188I	TCNGA	1 cut(s)	736
Hpy188III	TCNNGA	6 cut(s)	26, 359, 524, 565, 638, 665
Hpy8I	GTNNAC	2 cut(s)	872, 914
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	635, 974, 1179
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	4 cut(s)	143, 292, 753, 1128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
HpyF3I	CTNAG	4 cut(s)	525, 726, 735, 819
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	486, 712, 1132
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	22, 190, 310, 454
LguI	GCTCTTC	1 cut(s)	485
LmnI	GCTCC	3 cut(s)	466, 526, 619
LpnPI	CCDG	8 cut(s)	33, 171, 257, 284, 315, 471, 537, 969
Lsp1109I	GCAGC	4 cut(s)	95, 284, 378, 431
LweI	GCATC	3 cut(s)	82, 351, 823
MaeI	CTAG	5 cut(s)	105, 465, 549, 596, 1152
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	4 cut(s)	24, 192, 312, 456
MboI	GATC	4 cut(s)	22, 190, 310, 454
MboII	GAAGA	6 cut(s)	236, 383, 494, 502, 1031, 1037
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	22, 454
MhlI	GDGCHC	2 cut(s)	238, 616
MluCI	AATT	8 cut(s)	220, 350, 362, 531, 748, 969, 998, 1069
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	327, 367, 506, 520, 786
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	6 cut(s)	471, 602, 624, 651, 1073, 1176
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	4 cut(s)	20, 302, 458, 956
MspR9I	CCNGG	4 cut(s)	272, 302, 956, 957
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
NciI	CCSGG	3 cut(s)	302, 956, 957
NdeII	GATC	4 cut(s)	22, 190, 310, 454
NlaIII	CATG	3 cut(s)	486, 712, 1132
NlaIV	GGNNCC	2 cut(s)	456, 462
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	1132
PaeR7I	CTCGAG	2 cut(s)	231, 563
PciSI	GCTCTTC	1 cut(s)	485
PctI	GAATGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	182
PflFI	GACNNNGTC	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	110, 299, 393, 446, 776
PleI	GAGTC	1 cut(s)	968
PmaCI	CACGTG	1 cut(s)	75
PmlI	CACGTG	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	968
Ppu21I	YACGTR	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	270
PspCI	CACGTG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	456, 462
PspPI	GGNCC	2 cut(s)	254, 433
PspXI	VCTCGAGB	1 cut(s)	231
PsuI	RGATCY	2 cut(s)	22, 454
PsyI	GACNNNGTC	1 cut(s)	571
RsaI	GTAC	6 cut(s)	280, 287, 629, 707, 873, 915
RsaNI	GTAC	6 cut(s)	279, 286, 628, 706, 872, 914
SacI	GAGCTC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	6 cut(s)	471, 602, 624, 651, 1073, 1176
SatI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
Sau3AI	GATC	4 cut(s)	22, 190, 310, 454
Sau96I	GGNCC	2 cut(s)	254, 433
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	4 cut(s)	272, 302, 956, 957
SduI	GDGCHC	2 cut(s)	238, 616
SfaNI	GCATC	3 cut(s)	82, 351, 823
Sfr274I	CTCGAG	2 cut(s)	231, 563
SinI	GGWCC	1 cut(s)	433
SlaI	CTCGAG	2 cut(s)	231, 563
SmaI	CCCGGG	1 cut(s)	957
SmlI	CTYRAG	4 cut(s)	231, 563, 623, 788
SmoI	CTYRAG	4 cut(s)	231, 563, 623, 788
Sse9I	AATT	8 cut(s)	220, 350, 362, 531, 748, 969, 998, 1069
SsiI	CCGC	2 cut(s)	557, 774
SspMI	CTAG	5 cut(s)	105, 465, 549, 596, 1152
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	4 cut(s)	270, 300, 954, 955
StyI	CCWWGG	2 cut(s)	250, 395
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	4 cut(s)	162, 232, 332, 564
TasI	AATT	8 cut(s)	220, 350, 362, 531, 748, 969, 998, 1069
TatI	WGTACW	5 cut(s)	278, 627, 705, 871, 913
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	6 cut(s)	471, 602, 624, 651, 1073, 1176
Tru9I	TTAA	6 cut(s)	471, 602, 624, 651, 1073, 1176
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	4 cut(s)	108, 297, 391, 444
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	6 cut(s)	471, 494, 732, 837, 887, 1040
TspGWI	ACGGA	1 cut(s)	599
TspMI	CCCGGG	1 cut(s)	955
Tth111I	GACNNNGTC	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	433
XceI	RCATGY	1 cut(s)	1132
XhoI	CTCGAG	2 cut(s)	231, 563
XmaI	CCCGGG	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	5 cut(s)	105, 465, 549, 596, 1152
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.