Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007383

Physical Location & Seq

Genomic Coordinates Forward (+)

7678842 .. 7686337

Gene Structure 7496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

ATGGCTCAAGATATGTCTGGTGCTGATTCACATCAAAAACGGTCAGGCCTTTTAAAAGATCAAGTCCGACTGGTTAAGAGGAAGGATTCCAATCATTATGAGATTGCACCAATCCAAAGTCCTTTGTCATTTGAGAAGGGTTTCTTTATTGTAATCCGTGCATGTCAGTTATTAGCTCAAAAGAATGATGGAATAATATTGGTCGGAGTGGCAGGTCCTTCTGGGGCTGGAAAGTCTGTGTTTACTGAAAAAATACTGAACTTTATGCCCAGCGTTGCGGTCATATCAATGGACAACTACAATGACGCTAGTCGAATTGTTGATGGCAACTTTGATGATCCACGTTTGACAGACTACGACACATTGCTCCAGAATGTCAGTGACTTAAGAGCAGGGAAGCCGGTTAAGGTTCCAGTATATGACTTCAAGTCCAGTTCCCGCACAGGATACAGGACAGTTGAAGTCCCAAGCTCCCGTATCGTTATCATTGAGGGCATTTATGCTTTGAGTGAAAAGTTGCGGCCTTTTCTGGATCTACGAGTATCTGTCACAGGTGGTGTTCACTTTGACCTTGTTAAAAGGGTTTTACGGGACATACAGCGAGCTGGCCAAGAACCAGAAGAAATAATTCATCAAATATCTGAAACAGTATACCCAATGTACAAGGCCTTTATCGAGCCAGATCTTCAAACTGCTCATATAAAAATTATCAACAAGTTCAATCCATTTACTGGATTTCAAAGTCCCACTTACATTTTAAAGTCAGCGAAGCCCTTGTCGGTGGATCAAATAAAGGCAGCCTTTACTGAAGAGCATACAGAAGCCAAGGAGGAGACCTATGACATATACCTTCTACCACCTGGTGAAGATCCAGAATCTTGCCAATCATATCTGAGGATGCGTGATAAAGATGGGAAATATAGTCTCATGTTTGAGGAGTGGGTGACAGATAATCCATTTGTTATATCACCAAGAATAACTTTTGAGGTCAGCGTGCGTCTTCTTGGTGGACTAATGGCTCTGGGATACACAATTGCTACCATCCTTAAAAGAAGCAGTCATGTATTCTTCAATGATGGTGTCTGTGTAAAAATTGATTGGCTAGAGCAACTCAATCGTCGATATATTCAGGTTTGCTGTTCATACATTCCTCGTACCTACATTGAACAAATTCAACTGGAAAAGCTCGTGAATGAGGTCATGGGAGTCATTACTCAGCTATCAGAGCATATATCTTCGCTGAATGATAGGATGGATGAGTTTACAAACCGAATTGAAGAGCTGAATTCCAAGTTGACTGTGAAGAAAAGTTCTAGCCAACAAAACATGGCTCTTCAAGCTGAAGCCTGCAATGGCTCCACTCCCACATATAATTTCATCTCTAGCTTGGGCAATGGATCTTTAACTGGCTCCATAATGCCTAATTCCTCATCTTCTGCCCAGTTGGCTAAGGAGTCTCCAGCACTGGAAGAGATATCAAATATTACAAGGGGACAACGTCAAATCGTGCACCAGTTAGACAATCTCAACAATCTCCTCCGGGAAAGCATGGGAGAGAGAAATCGACCGGCAAGAACAAACAGCACAGCGAACCTCACCGACCGGCGGGAACACCTCTTAAGACCCAGAAAAAGTTGGAGTATGCGAATGGGCGATAAACCGGATCGTGATTTGATAAGCAATCTGCCTCAGAGCATTATAGAGAGCATTCTCACGTGTTTGCCAATAGGAGATGCTATAAGAACTAGCTGCTTGTCAAGGAAATGGAGATACAAATGGACTACACTCACTCATCTTGTATTCGACGAAAAATGTGTGGCTCAATCTGGTGATCAAGTAGTTGTCACAAAAAGCCTTATCAATTTTATAACTCGAGCTCTCTTTCTTCACCAAGGCCCTATTCACAAGTTCCAGGTCTGTACTTCGTACTTGCAGAGCTGCCCGGATATAGATCAATGGATACTTTTCCTTTCGAGGAATGGCATCAAAGAATTGGTTCTTGAATTGGGAGAAGAGGGTGAGTGGTTTAGGCTGCCTTGGTGTCTTTTTTATTGTGAAAAGCTGACCCGTTTGGACCTATATCGCTGCGAGTTGGATCCGGCTCCTAGTTTTAAAGGATTTTCATGTTTGAAGAGCCTCAATCTTCATCAAGTTTTGGTTGCTCCTGAGGCAATTGAAAGTCTTATTTCTAGTTGCCCGCTACTTGAGACCTTGTGTTTGGCATACTTTGATAGCCTAGCTTTAAATATCCGTGCTCCAAATCTTAAGTACTTATGTCTTGAAGGTGAGTTTAAGGACATATCTCTTGAAAATACTCCACTATTGGTTGATTTATCTGTTGCTTTGTACATGACTGATGAAAATGCTGAGAACTCTGAGCAAAGTTCAAATTGCAAGTTTATCAAGTTTCTTGGCGGCATACCACGCCTTGAGAGGCTTATTGGGCATATCTACTTTACTAAGGTACTACGAGATGCTTTTGTTTGTTTGTTCTCACTTGCGTTTTCAAGTGTACATACCATAGCTACATTTATGTTTCACAACAGCGATACTCTTCTTATTTCTGTGTGTACTGTTTTTTGTTTCAAGTATTTGAGTGTAGGTAAAGACCCGGGAGTCCTTCCAATTACATATAACCATCTAAAGATTATTGAATTATATCAAGTGAGTTTTGAAGATATGAAAGAGATACTTGTTGTTCTTCGCTTGATTACAAACTCTCCTAATTTAAAGGAACTTCAACTCTCGGGATCCTCTTTAACATCAATGGAATCACCGGATTTGGATTTCTGGGAGAAAGAAGGCCCTTCAGATTGCACATTCCACAAACTTAACGTTGTGAAGATGACAGATATGTCCGGACTGCCACATGAGATGGAATTCATCAAATTTTTGTTGAGAAAATCACCGGTGCTTGAGATCATGAGTATTATGCCTTGTGTGTTTGTTACTATGGAGTCGCGTTTGATAATAGTCACGGAGTTGCTTAGTTTTACAAGGGCGTCTCCTAAAGCAGGAATTGTATTCATCCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

1013

Amino Acids

114.66

Weight (kDa)

6.07

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	68 - 236	1.1e-23	Phosphoribulokinase / Uridine kinase family
CYTH	PF01928	251 - 399	2.5e-18	CYTH domain
F-box	PF00646	559 - 595	9.1e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	639 - 747	1e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	650 - 783	5.1e-18	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	936 - 977	5.7e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13570 AT1G13570 AT1G13570
fragaria_vesca	FvH4_4g28670 FvH4_4g28670 FvH4_4g28670 FvH4_4g28670
malus_domestica	MD13G1052800.v1.1 MD16G1051800.v1.1
prunus_persica	Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1
pyrus_communis	pycom13g04730 pycom16g04550
rosa_chinensis	RchiOBHm_Chr4g0436781
rosa_laevigata	RLG00000006496
rosa_multiflora	Rmu_co8098618.1_g000001 Rmu_sc0001837.1_g000005
rosa_roxburghii	Rroxscaffold_5G00377850
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350500 Rh4BG359400 Rh4CG373700 Rh4DG353400
rosa_wichuraiana	Rw4G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1868
AasI	GACNNNNNNGTC	2 cut(s)	2615, 2854
Acc36I	ACCTGC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	651
AccII	CGCG	1 cut(s)	2962
AccIII	TCCGGA	1 cut(s)	2858
AciI	CCGC	6 cut(s)	278, 439, 520, 1606, 2198, 2415
AclI	AACGTT	1 cut(s)	2835
AcoI	YGGCCR	1 cut(s)	607
AcsI	RAATTY	4 cut(s)	1170, 1285, 2879, 2888
AcuI	CTGAAG	3 cut(s)	828, 1362, 2793
AcvI	CACGTG	1 cut(s)	1716
AcyI	GRCGYC	1 cut(s)	3002
AdeI	CACNNNGTG	1 cut(s)	863
AfaI	GTAC	9 cut(s)	662, 1156, 1921, 1928, 2270, 2348, 2466, 2514, 2572
AfiI	CCNNNNNNNGG	3 cut(s)	731, 1605, 3014
AflII	CTTAAG	3 cut(s)	385, 1618, 2264
AflIII	ACRYGT	1 cut(s)	1715
AgeI	ACCGGT	1 cut(s)	2908
AhdI	GACNNNNNGTC	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	859, 1911
AjuI	GAANNNNNNNTTGG	2 cut(s)	1884, 1916
Alw21I	GWGCWC	3 cut(s)	1512, 1879, 2257
Alw26I	GTCTC	5 cut(s)	827, 929, 1461, 2201, 3009
Alw44I	GTGCAC	1 cut(s)	1508
Ama87I	CYCGRG	3 cut(s)	1872, 2611, 2746
Aor13HI	TCCGGA	1 cut(s)	2858
AoxI	GGCC	6 cut(s)	46, 521, 607, 666, 1894, 2803
ApaLI	GTGCAC	1 cut(s)	1508
ApeKI	GCWGC	5 cut(s)	797, 1749, 1938, 2032, 2085
ApoI	RAATTY	4 cut(s)	1170, 1285, 2879, 2888
ArsI	GACNNNNNNTTYG	4 cut(s)	761, 793, 2200, 2232
AsiGI	ACCGGT	1 cut(s)	2908
Asp700I	GAANNNNTTC	4 cut(s)	140, 627, 1170, 1995
AspS9I	GGNCC	4 cut(s)	215, 1895, 2074, 2804
AsuC2I	CCSGG	4 cut(s)	1541, 1943, 2612, 2613
AvaI	CYCGRG	3 cut(s)	1872, 2611, 2746
AvaII	GGWCC	2 cut(s)	215, 2074
AxyI	CCTNAGG	1 cut(s)	2166
BaeGI	GKGCMC	1 cut(s)	1512
BalI	TGGCCA	1 cut(s)	609
BamHI	GGATCC	2 cut(s)	2095, 2750
BanII	GRGCYC	1 cut(s)	1879
BauI	CACGAG	1 cut(s)	1187
BbrPI	CACGTG	1 cut(s)	1716
BbsI	GAAGAC	1 cut(s)	992
Bbv12I	GWGCWC	3 cut(s)	1512, 1879, 2257
BbvI	GCAGC	5 cut(s)	809, 1736, 1925, 2019, 2072
BccI	CCATC	8 cut(s)	182, 317, 905, 1049, 1070, 1246, 2646, 2869
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciT130I	CCWGG	2 cut(s)	861, 1913
BciVI	GTATCC	3 cut(s)	440, 1019, 1953
BclI	TGATCA	1 cut(s)	1831
BcnI	CCSGG	4 cut(s)	1541, 1943, 2612, 2613
BcoDI	GTCTC	5 cut(s)	827, 929, 1461, 2201, 3009
BfaI	CTAG	9 cut(s)	309, 1103, 1314, 1383, 1746, 2106, 2190, 2237, 3037
BfrI	CTTAAG	3 cut(s)	385, 1618, 2264
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	3 cut(s)	440, 1019, 1953
BglI	GCCNNNNNGGC	1 cut(s)	1445
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	7 cut(s)	521, 798, 1750, 1939, 2033, 2086, 2416
BlsI	GCNGC	7 cut(s)	522, 799, 1751, 1940, 2034, 2087, 2417
BmcAI	AGTACT	1 cut(s)	2270
Bme1390I	CCNGG	6 cut(s)	861, 1541, 1913, 1943, 2612, 2613
Bme18I	GGWCC	2 cut(s)	215, 2074
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmeT110I	CYCGRG	3 cut(s)	1872, 2611, 2746
BmgT120I	GGNCC	4 cut(s)	215, 1895, 2074, 2804
BmiI	GGNNCC	6 cut(s)	411, 1357, 1411, 2097, 2103, 2752
BmrFI	CCNGG	6 cut(s)	861, 1541, 1913, 1943, 2612, 2613
BmrI	ACTGGG	1 cut(s)	1435
BmsI	GCATC	4 cut(s)	888, 1723, 1992, 2464
BmuI	ACTGGG	1 cut(s)	1435
BoxI	GACNNNNGTC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	992
BpmI	CTGGAG	2 cut(s)	353, 1443
Bpu10I	CCTNAGC	1 cut(s)	1449
BpuEI	CTTGAG	3 cut(s)	2225, 2450, 2936
BpuMI	CCSGG	4 cut(s)	1541, 1943, 2612, 2613
BsaAI	YACGTR	1 cut(s)	1716
BsaBI	GATNNNNATC	3 cut(s)	30, 90, 1950
BsaHI	GRCGYC	1 cut(s)	3002
BsaI	GGTCTC	2 cut(s)	827, 2201
BsaJI	CCNNGG	4 cut(s)	825, 1891, 2036, 2611
BsaWI	WCCGGW	4 cut(s)	1660, 2776, 2858, 2908
BsaXI	ACNNNNNCTCC	2 cut(s)	2704, 2734
Bsc4I	CCNNNNNNNGG	3 cut(s)	731, 1605, 3014
Bse118I	RCCGGY	4 cut(s)	400, 1567, 1602, 2908
Bse1I	ACTGG	9 cut(s)	75, 413, 432, 736, 1182, 1411, 1441, 1470, 1513
Bse21I	CCTNAGG	1 cut(s)	2166
Bse3DI	GCAATG	3 cut(s)	362, 1357, 1399
Bse8I	GATNNNNATC	3 cut(s)	30, 90, 1950
BseAI	TCCGGA	1 cut(s)	2858
BseBI	CCWGG	2 cut(s)	861, 1913
BseDI	CCNNGG	4 cut(s)	825, 1891, 2036, 2611
BseGI	GGATG	5 cut(s)	903, 1041, 1257, 1261, 3027
BseJI	GATNNNNATC	3 cut(s)	30, 90, 1950
BseLI	CCNNNNNNNGG	3 cut(s)	731, 1605, 3014
BseMI	GCAATG	3 cut(s)	362, 1357, 1399
BseMII	CTCAG	6 cut(s)	884, 1229, 1703, 2157, 2358, 2367
BseNI	ACTGG	9 cut(s)	75, 413, 432, 736, 1182, 1411, 1441, 1470, 1513
BseRI	GAGGAG	3 cut(s)	845, 950, 1526
BseSI	GKGCMC	1 cut(s)	1512
BseXI	GCAGC	5 cut(s)	809, 1736, 1925, 2019, 2072
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	2962
Bsh1285I	CGRYCG	2 cut(s)	1568, 1603
BshFI	GGCC	6 cut(s)	48, 523, 609, 668, 1896, 2805
BshTI	ACCGGT	1 cut(s)	2908
BsiEI	CGRYCG	2 cut(s)	1568, 1603
BsiHKAI	GWGCWC	3 cut(s)	1512, 1879, 2257
BsiHKCI	CYCGRG	3 cut(s)	1872, 2611, 2746
BslFI	GGGAC	4 cut(s)	449, 605, 729, 1506
BslI	CCNNNNNNNGG	3 cut(s)	731, 1605, 3014
BsmAI	GTCTC	5 cut(s)	827, 929, 1461, 2201, 3009
BsmBI	CGTCTC	1 cut(s)	3009
BsmFI	GGGAC	4 cut(s)	449, 605, 729, 1506
BsmI	GAATGC	1 cut(s)	1707
BsnI	GGCC	6 cut(s)	48, 523, 609, 668, 1896, 2805
Bso31I	GGTCTC	2 cut(s)	827, 2201
BsoBI	CYCGRG	3 cut(s)	1872, 2611, 2746
Bsp1286I	GDGCHC	3 cut(s)	1512, 1879, 2257
Bsp13I	TCCGGA	1 cut(s)	2858
Bsp1407I	TGTACA	3 cut(s)	660, 2346, 2512
BspACI	CCGC	6 cut(s)	278, 439, 520, 1606, 2198, 2415
BspANI	GGCC	6 cut(s)	48, 523, 609, 668, 1896, 2805
BspCNI	CTCAG	6 cut(s)	885, 1228, 1702, 2158, 2359, 2368
BspEI	TCCGGA	1 cut(s)	2858
BspFNI	CGCG	1 cut(s)	2962
BspHI	TCATGA	1 cut(s)	2922
BspLI	GGNNCC	6 cut(s)	411, 1357, 1411, 2097, 2103, 2752
BspMI	ACCTGC	1 cut(s)	203
BspQI	GCTCTTC	4 cut(s)	804, 1272, 1338, 2126
BspTI	CTTAAG	3 cut(s)	385, 1618, 2264
BspTNI	GGTCTC	2 cut(s)	827, 2201
BsrDI	GCAATG	3 cut(s)	362, 1357, 1399
BsrFI	RCCGGY	4 cut(s)	400, 1567, 1602, 2908
BsrGI	TGTACA	3 cut(s)	660, 2346, 2512
BsrI	ACTGG	9 cut(s)	75, 413, 432, 736, 1182, 1411, 1441, 1470, 1513
BssAI	RCCGGY	4 cut(s)	400, 1567, 1602, 2908
BssECI	CCNNGG	4 cut(s)	825, 1891, 2036, 2611
BssNAI	GTATAC	1 cut(s)	652
BssNI	GRCGYC	1 cut(s)	3002
BssSI	CACGAG	1 cut(s)	1187
BssT1I	CCWWGG	3 cut(s)	825, 1891, 2036
Bst1107I	GTATAC	1 cut(s)	652
Bst2BI	CACGAG	1 cut(s)	1187
Bst2UI	CCWGG	2 cut(s)	861, 1913
Bst4CI	ACNGT	5 cut(s)	42, 457, 649, 1300, 2575
Bst6I	CTCTTC	7 cut(s)	804, 1272, 1338, 1464, 2007, 2126, 2559
BstACI	GRCGYC	1 cut(s)	3002
BstAFI	CTTAAG	3 cut(s)	385, 1618, 2264
BstAUI	TGTACA	3 cut(s)	660, 2346, 2512
BstBAI	YACGTR	1 cut(s)	1716
BstC8I	GCNNGC	5 cut(s)	603, 607, 995, 1348, 2198
BstDEI	CTNAG	9 cut(s)	893, 1215, 1449, 1689, 2166, 2367, 2376, 2460, 2987
BstENI	CCTNNNNNAGG	1 cut(s)	3012
BstF5I	GGATG	5 cut(s)	903, 1041, 1257, 1261, 3027
BstFNI	CGCG	1 cut(s)	2962
BstMAI	GTCTC	5 cut(s)	827, 929, 1461, 2201, 3009
BstMCI	CGRYCG	2 cut(s)	1568, 1603
BstMWI	GCNNNNNNNGC	6 cut(s)	1225, 1337, 1445, 2168, 2424, 2443
BstNI	CCWGG	2 cut(s)	861, 1913
BstNSI	RCATGY	1 cut(s)	165
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	6 cut(s)	859, 1539, 1911, 1941, 2610, 2611
BstSLI	GKGCMC	1 cut(s)	1512
BstUI	CGCG	1 cut(s)	2962
BstV1I	GCAGC	5 cut(s)	809, 1736, 1925, 2019, 2072
BstV2I	GAAGAC	1 cut(s)	992
BstX2I	RGATCY	6 cut(s)	532, 682, 868, 1397, 2095, 2750
BstYI	RGATCY	6 cut(s)	532, 682, 868, 1397, 2095, 2750
BstZ17I	GTATAC	1 cut(s)	652
Bsu36I	CCTNAGG	1 cut(s)	2166
BsuI	GTATCC	3 cut(s)	440, 1019, 1953
BsuRI	GGCC	6 cut(s)	48, 523, 609, 668, 1896, 2805
BtsCI	GGATG	5 cut(s)	903, 1041, 1257, 1261, 3027
BtsIMutI	CAGTG	2 cut(s)	385, 1463
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	5 cut(s)	603, 607, 995, 1348, 2198
CciI	TCATGA	1 cut(s)	2922
Cfr10I	RCCGGY	4 cut(s)	400, 1567, 1602, 2908
Cfr13I	GGNCC	4 cut(s)	215, 1895, 2074, 2804
Cfr9I	CCCGGG	1 cut(s)	2611
CseI	GACGC	3 cut(s)	314, 986, 2991
CsiI	ACCWGGT	1 cut(s)	859
Csp6I	GTAC	9 cut(s)	661, 1155, 1920, 1927, 2269, 2347, 2465, 2513, 2571
CspAI	ACCGGT	1 cut(s)	2908
CviQI	GTAC	9 cut(s)	661, 1155, 1920, 1927, 2269, 2347, 2465, 2513, 2571
DdeI	CTNAG	9 cut(s)	893, 1215, 1449, 1689, 2166, 2367, 2376, 2460, 2987
DraI	TTTAAA	5 cut(s)	54, 759, 2113, 2244, 2730
DraIII	CACNNNGTG	1 cut(s)	863
DrdI	GACNNNNNNGTC	2 cut(s)	2615, 2854
DriI	GACNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	2 cut(s)	2615, 2854
EaeI	YGGCCR	1 cut(s)	607
Eam1104I	CTCTTC	7 cut(s)	804, 1272, 1338, 1464, 2007, 2126, 2559
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	7 cut(s)	804, 1272, 1338, 1464, 2007, 2126, 2559
Ecl136II	GAGCTC	1 cut(s)	1877
Eco130I	CCWWGG	3 cut(s)	825, 1891, 2036
Eco147I	AGGCCT	2 cut(s)	48, 668
Eco24I	GRGCYC	1 cut(s)	1879
Eco31I	GGTCTC	2 cut(s)	827, 2201
Eco32I	GATATC	1 cut(s)	1476
Eco47I	GGWCC	2 cut(s)	215, 2074
Eco53kI	GAGCTC	1 cut(s)	1877
Eco57I	CTGAAG	3 cut(s)	828, 1362, 2793
Eco72I	CACGTG	1 cut(s)	1716
Eco81I	CCTNAGG	1 cut(s)	2166
Eco88I	CYCGRG	3 cut(s)	1872, 2611, 2746
EcoICRI	GAGCTC	1 cut(s)	1877
EcoNI	CCTNNNNNAGG	1 cut(s)	3012
EcoO109I	RGGNCCY	3 cut(s)	215, 1895, 2804
EcoRI	GAATTC	2 cut(s)	1285, 2879
EcoRII	CCWGG	2 cut(s)	859, 1911
EcoRV	GATATC	1 cut(s)	1476
EcoT14I	CCWWGG	3 cut(s)	825, 1891, 2036
EcoT38I	GRGCYC	1 cut(s)	1879
ErhI	CCWWGG	3 cut(s)	825, 1891, 2036
Esp3I	CGTCTC	1 cut(s)	3009
FaqI	GGGAC	4 cut(s)	449, 605, 729, 1506
FauI	CCCGC	3 cut(s)	446, 1599, 2205
FbaI	TGATCA	1 cut(s)	1831
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	7 cut(s)	521, 798, 1750, 1939, 2033, 2086, 2416
FokI	GGATG	5 cut(s)	910, 1028, 1264, 1268, 3014
FriOI	GRGCYC	1 cut(s)	1879
Fsp4HI	GCNGC	7 cut(s)	521, 798, 1750, 1939, 2033, 2086, 2416
FspBI	CTAG	9 cut(s)	309, 1103, 1314, 1383, 1746, 2106, 2190, 2237, 3037
GluI	GCNGC	7 cut(s)	521, 798, 1750, 1939, 2033, 2086, 2416
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	2 cut(s)	353, 1443
HaeIII	GGCC	6 cut(s)	48, 523, 609, 668, 1896, 2805
HgaI	GACGC	3 cut(s)	314, 986, 2991
Hin1I	GRCGYC	1 cut(s)	3002
HincII	GTYRAC	1 cut(s)	1296
HindII	GTYRAC	1 cut(s)	1296
HinfI	GANTC	8 cut(s)	26, 86, 875, 1206, 1454, 2616, 2771, 2957
Hpy166II	GTNNAC	9 cut(s)	243, 562, 652, 1010, 1263, 1296, 1510, 2513, 2571
Hpy188I	TCNGA	8 cut(s)	68, 206, 643, 894, 1225, 1692, 2377, 2812
Hpy8I	GTNNAC	9 cut(s)	243, 562, 652, 1010, 1263, 1296, 1510, 2513, 2571
Hpy99I	CGWCG	2 cut(s)	1122, 1808
HpyAV	CCTTC	8 cut(s)	76, 130, 228, 860, 2276, 2630, 2795, 2817
HpyCH4III	ACNGT	5 cut(s)	42, 457, 649, 1300, 2575
HpyCH4IV	ACGT	4 cut(s)	343, 1498, 1715, 2835
HpyCH4V	TGCA	7 cut(s)	107, 161, 1350, 1510, 1933, 2394, 2817
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1225, 1337, 1445, 2168, 2424, 2443
HpyF3I	CTNAG	9 cut(s)	893, 1215, 1449, 1689, 2166, 2367, 2376, 2460, 2987
HpySE526I	ACGT	4 cut(s)	343, 1498, 1715, 2835
Hsp92I	GRCGYC	1 cut(s)	3002
Kpn2I	TCCGGA	1 cut(s)	2858
Ksp22I	TGATCA	1 cut(s)	1831
LguI	GCTCTTC	4 cut(s)	804, 1272, 1338, 2126
LmnI	GCTCC	7 cut(s)	372, 476, 1361, 1415, 2107, 2167, 2260
Lsp1109I	GCAGC	5 cut(s)	809, 1736, 1925, 2019, 2072
LweI	GCATC	4 cut(s)	888, 1723, 1992, 2464
MabI	ACCWGGT	1 cut(s)	859
MaeI	CTAG	9 cut(s)	309, 1103, 1314, 1383, 1746, 2106, 2190, 2237, 3037
MaeII	ACGT	4 cut(s)	343, 1498, 1715, 2835
MaeIII	GTNAC	6 cut(s)	380, 547, 943, 1843, 2947, 2974
MfeI	CAATTG	2 cut(s)	1032, 2172
MflI	RGATCY	6 cut(s)	532, 682, 868, 1397, 2095, 2750
MhlI	GDGCHC	3 cut(s)	1512, 1879, 2257
MlsI	TGGCCA	1 cut(s)	609
MluNI	TGGCCA	1 cut(s)	609
MlyI	GAGTC	4 cut(s)	1215, 1463, 2625, 2966
MmeI	TCCRAC	4 cut(s)	91, 184, 1616, 2073
Mox20I	TGGCCA	1 cut(s)	609
MroI	TCCGGA	1 cut(s)	2858
MroXI	GAANNNNTTC	4 cut(s)	140, 627, 1170, 1995
MscI	TGGCCA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	609
MspCI	CTTAAG	3 cut(s)	385, 1618, 2264
MspR9I	CCNGG	6 cut(s)	861, 1541, 1913, 1943, 2612, 2613
MunI	CAATTG	2 cut(s)	1032, 2172
Mva1269I	GAATGC	1 cut(s)	1707
MvaI	CCWGG	2 cut(s)	861, 1913
MvnI	CGCG	1 cut(s)	2962
MwoI	GCNNNNNNNGC	6 cut(s)	1225, 1337, 1445, 2168, 2424, 2443
NciI	CCSGG	4 cut(s)	1541, 1943, 2612, 2613
NlaIV	GGNNCC	6 cut(s)	411, 1357, 1411, 2097, 2103, 2752
NmuCI	GTSAC	5 cut(s)	380, 547, 943, 1843, 2974
NspI	RCATGY	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	1872
PagI	TCATGA	1 cut(s)	2922
PceI	AGGCCT	2 cut(s)	48, 668
PciSI	GCTCTTC	4 cut(s)	804, 1272, 1338, 2126
PctI	GAATGC	1 cut(s)	1707
PdmI	GAANNNNTTC	4 cut(s)	140, 627, 1170, 1995
PfeI	GAWTC	4 cut(s)	26, 86, 875, 2771
PflFI	GACNNNGTC	1 cut(s)	1497
PflMI	CCANNNNNTGG	1 cut(s)	731
PfoI	TCCNGGA	1 cut(s)	1539
PinAI	ACCGGT	1 cut(s)	2908
PkrI	GCNGC	7 cut(s)	522, 799, 1751, 1940, 2034, 2087, 2417
PleI	GAGTC	4 cut(s)	1214, 1462, 2624, 2965
PmaCI	CACGTG	1 cut(s)	1716
PmlI	CACGTG	1 cut(s)	1716
PpsI	GAGTC	4 cut(s)	1214, 1462, 2624, 2965
Ppu21I	YACGTR	1 cut(s)	1716
PpuMI	RGGWCCY	1 cut(s)	215
PshAI	GACNNNNGTC	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	1868
Psp124BI	GAGCTC	1 cut(s)	1879
Psp1406I	AACGTT	1 cut(s)	2835
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	859, 1911
PspCI	CACGTG	1 cut(s)	1716
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	859, 1911
PspN4I	GGNNCC	6 cut(s)	411, 1357, 1411, 2097, 2103, 2752
PspPI	GGNCC	4 cut(s)	215, 1895, 2074, 2804
PspPPI	RGGWCCY	1 cut(s)	215
PspXI	VCTCGAGB	1 cut(s)	1872
PsuI	RGATCY	6 cut(s)	532, 682, 868, 1397, 2095, 2750
PsyI	GACNNNGTC	1 cut(s)	1497
RsaI	GTAC	9 cut(s)	662, 1156, 1921, 1928, 2270, 2348, 2466, 2514, 2572
RsaNI	GTAC	9 cut(s)	661, 1155, 1920, 1927, 2269, 2347, 2465, 2513, 2571
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	1879
SapI	GCTCTTC	4 cut(s)	804, 1272, 1338, 2126
SatI	GCNGC	7 cut(s)	521, 798, 1750, 1939, 2033, 2086, 2416
Sau96I	GGNCC	4 cut(s)	215, 1895, 2074, 2804
ScaI	AGTACT	1 cut(s)	2270
SchI	GAGTC	4 cut(s)	1215, 1463, 2625, 2966
ScrFI	CCNGG	6 cut(s)	861, 1541, 1913, 1943, 2612, 2613
SduI	GDGCHC	3 cut(s)	1512, 1879, 2257
SexAI	ACCWGGT	1 cut(s)	859
SfaNI	GCATC	4 cut(s)	888, 1723, 1992, 2464
Sfr274I	CTCGAG	1 cut(s)	1872
SgrAI	CRCCGGYG	1 cut(s)	2908
SinI	GGWCC	2 cut(s)	215, 2074
SlaI	CTCGAG	1 cut(s)	1872
SmaI	CCCGGG	1 cut(s)	2613
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	8 cut(s)	6, 385, 1618, 1872, 2204, 2264, 2429, 2915
SmoI	CTYRAG	8 cut(s)	6, 385, 1618, 1872, 2204, 2264, 2429, 2915
SseBI	AGGCCT	2 cut(s)	48, 668
SsiI	CCGC	6 cut(s)	278, 439, 520, 1606, 2198, 2415
SspI	AATATT	2 cut(s)	198, 1483
SspMI	CTAG	9 cut(s)	309, 1103, 1314, 1383, 1746, 2106, 2190, 2237, 3037
SstI	GAGCTC	1 cut(s)	1879
StuI	AGGCCT	2 cut(s)	48, 668
StyD4I	CCNGG	6 cut(s)	859, 1539, 1911, 1941, 2610, 2611
StyI	CCWWGG	3 cut(s)	825, 1891, 2036
TaaI	ACNGT	5 cut(s)	42, 457, 649, 1300, 2575
TaiI	ACGT	4 cut(s)	346, 1501, 1718, 2838
TaqI	TCGA	7 cut(s)	313, 675, 1120, 1564, 1803, 1873, 1973
TatI	WGTACW	6 cut(s)	660, 1919, 2268, 2346, 2512, 2570
TauI	GCSGC	2 cut(s)	523, 2418
TfiI	GAWTC	4 cut(s)	26, 86, 875, 2771
TscAI	CASTG	2 cut(s)	385, 1470
TseFI	GTSAC	5 cut(s)	380, 547, 943, 1843, 2974
TseI	GCWGC	5 cut(s)	797, 1749, 1938, 2032, 2085
Tsp45I	GTSAC	5 cut(s)	380, 547, 943, 1843, 2974
TspDTI	ATGAA	9 cut(s)	620, 1131, 1366, 2112, 2135, 2373, 2696, 2872, 3016
TspGWI	ACGGA	3 cut(s)	146, 2240, 2993
TspMI	CCCGGG	1 cut(s)	2611
TspRI	CASTG	2 cut(s)	385, 1470
Tth111I	GACNNNGTC	1 cut(s)	1497
Van91I	CCANNNNNTGG	1 cut(s)	731
Vha464I	CTTAAG	3 cut(s)	385, 1618, 2264
VneI	GTGCAC	1 cut(s)	1508
VpaK11BI	GGWCC	2 cut(s)	215, 2074
XagI	CCTNNNNNAGG	1 cut(s)	3012
XapI	RAATTY	4 cut(s)	1170, 1285, 2879, 2888
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	1872
XmaI	CCCGGG	1 cut(s)	2611
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	4 cut(s)	140, 627, 1170, 1995
XspI	CTAG	9 cut(s)	309, 1103, 1314, 1383, 1746, 2106, 2190, 2237, 3037
ZrmI	AGTACT	1 cut(s)	2270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.