RchiOBHm_Chr4g0436781

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
60012907 .. 60015229
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40509

Sequence Viewer

Length: 1272 bp
ATGCGAATGGGCGATAAACCGGATCTTGATTTGATAAGCAATCTGCCTCAGAGCATTATAGAGAGCATTCTCACGTGTTTGCCAATAGGAGATGCTATAAGAACTAGCTGCTTGTCAAGGAAATGGAGATACAAATGGACTACACTCACTCATCTTGTATTCGACGAAAAATGTGTGGCTCAATCTGGTGATCAAGTAGCCGTCACAAAAAGCCTTATCAATTTTATAACTCGAGCTCTCTTTCTTCACCAAGGCCCTATTCACAAGTTCCAGGTCTGTACTTCGTACTTGCAGAGCTGCCCTGATATAGATCAATGGATACTTTTCCTTTCGAGGAATGGCATCAAAGAATTGGTTCTTGAATTGGGAGAAGAGGGTGAGTGGTTTAGGCTGCCTTGGTGTCTTTTTTATTGTGAAAAGCTGACCCGTTTGGACCTATATCGCTGCGAGTTGGATCCGGCTCCTAGTTTTAAAGGATTTTCATGTTTGAAGAGCCTCAATCTTCATCAAGTTTTGGTTGCTCCTGAGGCAATTGAAAGTCTTATTTCTAGTTGCCCGCTACTCGAGACCTTGTCTTTGGCATACTTTGATAGCCTAGCTTTAAACATCCGTGCTCCAAATCTTAAGTACTTATGTCTTGAAGGTGAGTTTAAGGACATATCTCTTGAAAATACTCCACTATTGGTTGATTTATCTGTTGCTTTGTACATGACTGATGAAAATGCTGAGAACTCTGAGCAAAGTTCAAATTGCAAGTTTATCAAGTTTCTTGGCGGCATACCACGCCTTGAGAGGCTTATTGGGCATATCTACTTTACTAAGTATTTGAGTATAGGTAAAGACCCGGGAGTCCTTCCAATTACATATAACCATCTAAAGATTATTGAATTATATCAAGTGAGTTTTGAAGATATGAAAGAGATACTTGTTGTTCTTCGCTTGATTACAAACTCTCCTAATTTAAAGGAACTTCAACTCTCGGGATCCTCTTTAACATCAATGGAATCACCGGATTTGGATTTCTGGGAGAAAGAAGGCCCTTCAGACTGCACATTCCACAAACTTAAAGTTGTGAAGATGACAGATATGTCCGGACTGCCACATGAGATGGAATTCATCAAATTTTTGTTGAGAAAATCACCGGTGCTTGAGATCATGAGTATTATGCCTTGTGTGTTTGTTACTATGGAGTCGCGTCTGATAATAGTCACGGAGTTGCTTAGTTTTACAAGGGCGTCTCCTAAAGCAGGAATTGTGTTCATCCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

423

Amino Acids

48.19

Weight (kDa)

5.44

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 48 3.1e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 91 - 199 6.8e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 103 - 325 8.4e-20 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 347 - 388 4.2e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AasI GACNNNNNNGTC 2 cut(s) 848, 1087
AccII CGCG 1 cut(s) 1195
AccIII TCCGGA 1 cut(s) 1091
AciI CCGC 2 cut(s) 557, 774
AclWI GGATC 5 cut(s) 30, 449, 462, 978, 991
AcsI RAATTY 2 cut(s) 1112, 1121
AcuI CTGAAG 1 cut(s) 1026
AcvI CACGTG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 1235
AfaI GTAC 4 cut(s) 280, 287, 629, 707
AfiI CCNNNNNNNGG 1 cut(s) 1247
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 1141
AgsI TTSAA 9 cut(s) 362, 490, 536, 641, 668, 747, 887, 908, 974
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 5 cut(s) 108, 236, 297, 421, 599
AluI AGCT 5 cut(s) 108, 236, 297, 421, 599
Alw21I GWGCWC 2 cut(s) 238, 616
Alw26I GTCTC 2 cut(s) 560, 1242
AlwI GGATC 5 cut(s) 30, 449, 462, 978, 991
Ama87I CYCGRG 4 cut(s) 231, 563, 844, 979
Aor13HI TCCGGA 1 cut(s) 1091
AoxI GGCC 2 cut(s) 253, 1036
ApeKI GCWGC 4 cut(s) 108, 297, 391, 444
ApoI RAATTY 2 cut(s) 1112, 1121
ArsI GACNNNNNNTTYG 2 cut(s) 559, 591
AsiGI ACCGGT 1 cut(s) 1141
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 254, 433, 1037
AsuC2I CCSGG 2 cut(s) 845, 846
AsuHPI GGTGA 6 cut(s) 200, 239, 389, 656, 999, 1131
AvaI CYCGRG 4 cut(s) 231, 563, 844, 979
AvaII GGWCC 1 cut(s) 433
AxyI CCTNAGG 1 cut(s) 525
BamHI GGATCC 2 cut(s) 454, 983
BanII GRGCYC 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 238, 616
BbvI GCAGC 4 cut(s) 95, 284, 378, 431
BccI CCATC 2 cut(s) 879, 1102
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 1 cut(s) 312
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 2 cut(s) 845, 846
BcoDI GTCTC 2 cut(s) 560, 1242
BfaI CTAG 4 cut(s) 105, 465, 549, 596
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 5 cut(s) 109, 298, 392, 445, 775
BlsI GCNGC 5 cut(s) 110, 299, 393, 446, 776
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 3 cut(s) 272, 845, 846
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 4 cut(s) 231, 563, 844, 979
BmgT120I GGNCC 3 cut(s) 254, 433, 1037
BmiI GGNNCC 3 cut(s) 456, 462, 985
BmrFI CCNGG 3 cut(s) 272, 845, 846
BmsI GCATC 2 cut(s) 82, 351
BpuEI CTTGAG 2 cut(s) 809, 1169
BpuMI CCSGG 2 cut(s) 845, 846
BsaAI YACGTR 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 1235
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 3 cut(s) 250, 395, 844
BsaWI WCCGGW 4 cut(s) 19, 1009, 1091, 1141
BsaXI ACNNNNNCTCC 2 cut(s) 937, 967
Bsc4I CCNNNNNNNGG 1 cut(s) 1247
Bse118I RCCGGY 1 cut(s) 1141
Bse21I CCTNAGG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 1091
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 250, 395, 844
BseGI GGATG 2 cut(s) 606, 1260
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 1247
BseMII CTCAG 4 cut(s) 62, 516, 717, 726
BseXI GCAGC 4 cut(s) 95, 284, 378, 431
BsgI GTGCAG 1 cut(s) 1033
Bsh1236I CGCG 1 cut(s) 1195
BshFI GGCC 2 cut(s) 255, 1038
BshTI ACCGGT 1 cut(s) 1141
BsiHKAI GWGCWC 2 cut(s) 238, 616
BsiHKCI CYCGRG 4 cut(s) 231, 563, 844, 979
BsiSI CCGG 6 cut(s) 20, 458, 845, 1010, 1092, 1142
BslI CCNNNNNNNGG 1 cut(s) 1247
BsmAI GTCTC 2 cut(s) 560, 1242
BsmBI CGTCTC 1 cut(s) 1242
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 2 cut(s) 255, 1038
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 4 cut(s) 231, 563, 844, 979
Bsp1286I GDGCHC 2 cut(s) 238, 616
Bsp13I TCCGGA 1 cut(s) 1091
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 6 cut(s) 22, 190, 310, 454, 983, 1152
BspACI CCGC 2 cut(s) 557, 774
BspANI GGCC 2 cut(s) 255, 1038
BspCNI CTCAG 4 cut(s) 61, 517, 718, 727
BspEI TCCGGA 1 cut(s) 1091
BspFNI CGCG 1 cut(s) 1195
BspHI TCATGA 1 cut(s) 1155
BspLI GGNNCC 3 cut(s) 456, 462, 985
BspPI GGATC 5 cut(s) 30, 449, 462, 978, 991
BspQI GCTCTTC 1 cut(s) 485
BspTI CTTAAG 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 1141
BsrGI TGTACA 1 cut(s) 705
BssAI RCCGGY 1 cut(s) 1141
BssECI CCNNGG 3 cut(s) 250, 395, 844
BssMI GATC 6 cut(s) 22, 190, 310, 454, 983, 1152
BssNI GRCGYC 1 cut(s) 1235
BssT1I CCWWGG 2 cut(s) 250, 395
Bst2UI CCWGG 1 cut(s) 272
Bst6I CTCTTC 2 cut(s) 366, 485
BstACI GRCGYC 1 cut(s) 1235
BstAFI CTTAAG 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 705
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 6 cut(s) 48, 525, 726, 735, 819, 1220
BstENI CCTNNNNNAGG 1 cut(s) 1245
BstF5I GGATG 2 cut(s) 606, 1260
BstFNI CGCG 1 cut(s) 1195
BstKTI GATC 6 cut(s) 25, 193, 313, 457, 986, 1155
BstMAI GTCTC 2 cut(s) 560, 1242
BstMBI GATC 6 cut(s) 22, 190, 310, 454, 983, 1152
BstMWI GCNNNNNNNGC 3 cut(s) 527, 783, 802
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 270, 843, 844
BstUI CGCG 1 cut(s) 1195
BstV1I GCAGC 4 cut(s) 95, 284, 378, 431
BstX2I RGATCY 3 cut(s) 22, 454, 983
BstYI RGATCY 3 cut(s) 22, 454, 983
Bsu36I CCTNAGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 255, 1038
BtsCI GGATG 2 cut(s) 606, 1260
Cac8I GCNNGC 1 cut(s) 557
CciI TCATGA 1 cut(s) 1155
Cfr10I RCCGGY 1 cut(s) 1141
Cfr13I GGNCC 3 cut(s) 254, 433, 1037
Cfr9I CCCGGG 1 cut(s) 844
CseI GACGC 2 cut(s) 1184, 1224
Csp6I GTAC 4 cut(s) 279, 286, 628, 706
CspAI ACCGGT 1 cut(s) 1141
CviAII CATG 4 cut(s) 483, 709, 1103, 1156
CviQI GTAC 4 cut(s) 279, 286, 628, 706
DdeI CTNAG 6 cut(s) 48, 525, 726, 735, 819, 1220
DpnI GATC 6 cut(s) 24, 192, 312, 456, 985, 1154
DpnII GATC 6 cut(s) 22, 190, 310, 454, 983, 1152
DraI TTTAAA 3 cut(s) 472, 603, 963
DrdI GACNNNNNNGTC 2 cut(s) 848, 1087
DseDI GACNNNNNNGTC 2 cut(s) 848, 1087
Eam1104I CTCTTC 2 cut(s) 366, 485
EarI CTCTTC 2 cut(s) 366, 485
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 250, 395
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 433
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 1026
Eco72I CACGTG 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 525
Eco88I CYCGRG 4 cut(s) 231, 563, 844, 979
EcoICRI GAGCTC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 1245
EcoO109I RGGNCCY 2 cut(s) 254, 1037
EcoRI GAATTC 1 cut(s) 1112
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 250, 395
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 250, 395
Esp3I CGTCTC 1 cut(s) 1242
FaeI CATG 4 cut(s) 486, 712, 1106, 1159
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FatI CATG 4 cut(s) 482, 708, 1102, 1155
FauI CCCGC 1 cut(s) 564
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 5 cut(s) 109, 298, 392, 445, 775
FokI GGATG 2 cut(s) 593, 1247
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 5 cut(s) 109, 298, 392, 445, 775
FspBI CTAG 4 cut(s) 105, 465, 549, 596
GluI GCNGC 5 cut(s) 109, 298, 392, 445, 775
HaeIII GGCC 2 cut(s) 255, 1038
HapII CCGG 6 cut(s) 20, 458, 845, 1010, 1092, 1142
HgaI GACGC 2 cut(s) 1184, 1224
Hin1I GRCGYC 1 cut(s) 1235
Hin1II CATG 4 cut(s) 486, 712, 1106, 1159
HinfI GANTC 3 cut(s) 849, 1004, 1190
HpaII CCGG 6 cut(s) 20, 458, 845, 1010, 1092, 1142
HphI GGTGA 6 cut(s) 200, 239, 389, 656, 999, 1131
Hpy188I TCNGA 4 cut(s) 51, 736, 1045, 1200
Hpy188III TCNNGA 9 cut(s) 26, 359, 524, 565, 638, 665, 981, 1092, 1156
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 4 cut(s) 635, 863, 1028, 1050
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 292, 753, 1050
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 783, 802
HpyF3I CTNAG 6 cut(s) 48, 525, 726, 735, 819, 1220
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 1235
Hsp92II CATG 4 cut(s) 486, 712, 1106, 1159
Kpn2I TCCGGA 1 cut(s) 1091
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 6 cut(s) 22, 190, 310, 454, 983, 1152
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 3 cut(s) 466, 526, 619
Lsp1109I GCAGC 4 cut(s) 95, 284, 378, 431
LweI GCATC 2 cut(s) 82, 351
MaeI CTAG 4 cut(s) 105, 465, 549, 596
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 3 cut(s) 202, 1180, 1207
MalI GATC 6 cut(s) 24, 192, 312, 456, 985, 1154
MboI GATC 6 cut(s) 22, 190, 310, 454, 983, 1152
MboII GAAGA 7 cut(s) 236, 383, 494, 502, 920, 926, 1087
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 3 cut(s) 22, 454, 983
MhlI GDGCHC 2 cut(s) 238, 616
MlyI GAGTC 2 cut(s) 858, 1199
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 7 cut(s) 57, 327, 367, 506, 520, 786, 997
MroI TCCGGA 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 7 cut(s) 471, 602, 624, 651, 962, 992, 1065
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 6 cut(s) 20, 458, 845, 1010, 1092, 1142
MspR9I CCNGG 3 cut(s) 272, 845, 846
MunI CAATTG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 1195
MwoI GCNNNNNNNGC 3 cut(s) 527, 783, 802
NciI CCSGG 2 cut(s) 845, 846
NdeII GATC 6 cut(s) 22, 190, 310, 454, 983, 1152
NlaIII CATG 4 cut(s) 486, 712, 1106, 1159
NlaIV GGNNCC 3 cut(s) 456, 462, 985
NmuCI GTSAC 2 cut(s) 202, 1207
PaeR7I CTCGAG 2 cut(s) 231, 563
PagI TCATGA 1 cut(s) 1155
PciSI GCTCTTC 1 cut(s) 485
PctI GAATGC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 1004
PflFI GACNNNGTC 1 cut(s) 571
PinAI ACCGGT 1 cut(s) 1141
PkrI GCNGC 5 cut(s) 110, 299, 393, 446, 776
PleI GAGTC 2 cut(s) 857, 1198
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
PpsI GAGTC 2 cut(s) 857, 1198
Ppu21I YACGTR 1 cut(s) 75
PsiI TTATAA 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 270
PspCI CACGTG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 456, 462, 985
PspPI GGNCC 3 cut(s) 254, 433, 1037
PspXI VCTCGAGB 1 cut(s) 231
PsuI RGATCY 3 cut(s) 22, 454, 983
PsyI GACNNNGTC 1 cut(s) 571
RsaI GTAC 4 cut(s) 280, 287, 629, 707
RsaNI GTAC 4 cut(s) 279, 286, 628, 706
SacI GAGCTC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 7 cut(s) 471, 602, 624, 651, 962, 992, 1065
SatI GCNGC 5 cut(s) 109, 298, 392, 445, 775
Sau3AI GATC 6 cut(s) 22, 190, 310, 454, 983, 1152
Sau96I GGNCC 3 cut(s) 254, 433, 1037
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 2 cut(s) 858, 1199
ScrFI CCNGG 3 cut(s) 272, 845, 846
SduI GDGCHC 2 cut(s) 238, 616
SfaNI GCATC 2 cut(s) 82, 351
Sfr274I CTCGAG 2 cut(s) 231, 563
SgrAI CRCCGGYG 1 cut(s) 1141
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 2 cut(s) 231, 563
SmaI CCCGGG 1 cut(s) 846
SmlI CTYRAG 5 cut(s) 231, 563, 623, 788, 1148
SmoI CTYRAG 5 cut(s) 231, 563, 623, 788, 1148
SsiI CCGC 2 cut(s) 557, 774
SspMI CTAG 4 cut(s) 105, 465, 549, 596
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 3 cut(s) 270, 843, 844
StyI CCWWGG 2 cut(s) 250, 395
TaiI ACGT 1 cut(s) 77
TaqI TCGA 4 cut(s) 162, 232, 332, 564
TatI WGTACW 3 cut(s) 278, 627, 705
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 1 cut(s) 1004
Tru1I TTAA 7 cut(s) 471, 602, 624, 651, 962, 992, 1065
Tru9I TTAA 7 cut(s) 471, 602, 624, 651, 962, 992, 1065
TseFI GTSAC 2 cut(s) 202, 1207
TseI GCWGC 4 cut(s) 108, 297, 391, 444
Tsp45I GTSAC 2 cut(s) 202, 1207
TspDTI ATGAA 6 cut(s) 471, 494, 732, 929, 1105, 1249
TspGWI ACGGA 2 cut(s) 599, 1226
TspMI CCCGGG 1 cut(s) 844
Tth111I GACNNNGTC 1 cut(s) 571
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 433
XagI CCTNNNNNAGG 1 cut(s) 1245
XapI RAATTY 2 cut(s) 1112, 1121
XhoI CTCGAG 2 cut(s) 231, 563
XmaI CCCGGG 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 4 cut(s) 105, 465, 549, 596
ZrmI AGTACT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.