Rroxscaffold_5G00377850

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
58430387 .. 58432502
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377850.1

Sequence Viewer

Length: 1224 bp
ATGCGAATGGGCGATAAACCGGATCGTGATTTGATAAGCAATCTGCCTCAGAGCATTATAGAGAGCATTCTCACGTGTTTGCCAATAGGAGATGCTATAAGAACTAGCTGCTTGTCAAGGAAATGGAGATACAAATGGACTACACTCACTCATCTTGTATTCGACGAAAAATGTGTGGCTCAATCTGGTGATCAAGTAGTTGTCACAAAAAGCCTTATCAATTTTATAACTCGAGCTCTCTTTCTTCACCAAGGCCCTATTCACAAGTTCCAGGTCTGTACTTCGTACTTGCAGAGCTGCCCGGATATAGATCAATGGATACTTTTCCTTTCGAGGAATGGCATCAAAGAATTGGTTCTTGAATTGGGAGAAGAGGGTGAGTGGTTTAGGCTGCCTTGGTGTCTTTTTTATTGTGAAAAGCTGACCCGTTTGGACCTATATCGCTGCGAGTTGGATCCGGCTCCTAGTTTTAAAGGATTTTCATGTTTGAAGAGCCTCAATCTTCATCAAGTTTTGGTTGCTCCTGAGGCAATTGAAAGTCTTATTTCTAGTTGCCCACTACTTGAGACCTTGTCTTTGGCATACTTTGATAGCCTAGCTTTAAATATCCGTGCTCCAAATCTTAAGTACTTATGTCTTGAAGGTGAGTTTAAGGACATATCTCTTGAAAATACTCCACTATTGGTTGATTTATCTGTTGCTTTGTACATGACTGATGAAAATGCTGAGAACTCTGAGCAAAGTTCAAATTGCAAGTTTATCAAGTTTCTTTGGCGGCATACCACGCGCCTTGAGAGGCTTATTGGGCATATCTACTTTACTAAGTATTTGAGTATAGGTAAAGACCCGGGAGTCCTTCCAATTACGTATAACCATCTAAAGATTATTGAATTATATCAAGTGAGTTTTGAAGATATGAAAGAGATACTTGTTGTTCTTCGCTTGATTACAAACTCTCCTAATTTAAAGGAACTTCAACTCTCGAAGGCCCCTTCAGATTGCACATTCCACAAACTTAAAGTTGTGAAGATGACAGATATGTCTGGACTGCCACATGAGATGGAATTCATCAAATTTTTGTTGAGAAAATCACCAGTGCTTGAGATCATGAGTATTATGCCTTGTGTGTTTGTTACTATGGAGTCGCGTTTGATAATAGTCACGGAGTTGCTCAGTTTTACAAGGGCGTCTCCTAAAGCAGGAATTGTATTCATCCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

407

Amino Acids

46.72

Weight (kDa)

6.34

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 48 2.9e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 91 - 203 1.8e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 103 - 326 5e-19 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 334 - 372 6.5e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AasI GACNNNNNNGTC 2 cut(s) 851, 1039
AccII CGCG 2 cut(s) 787, 1147
AciI CCGC 1 cut(s) 775
AclWI GGATC 3 cut(s) 30, 449, 462
AcsI RAATTY 2 cut(s) 1064, 1073
AcuI CTGAAG 1 cut(s) 978
AcvI CACGTG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 1187
AfaI GTAC 4 cut(s) 280, 287, 629, 707
AfiI CCNNNNNNNGG 1 cut(s) 1199
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 9 cut(s) 362, 490, 536, 641, 668, 747, 890, 911, 977
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 5 cut(s) 108, 236, 297, 421, 599
AluI AGCT 5 cut(s) 108, 236, 297, 421, 599
Alw21I GWGCWC 2 cut(s) 238, 616
Alw26I GTCTC 2 cut(s) 560, 1194
AlwI GGATC 3 cut(s) 30, 449, 462
Ama87I CYCGRG 2 cut(s) 231, 847
AoxI GGCC 2 cut(s) 253, 987
ApeKI GCWGC 4 cut(s) 108, 297, 391, 444
ApoI RAATTY 2 cut(s) 1064, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 559, 591
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 789
AspS9I GGNCC 3 cut(s) 254, 433, 988
AsuC2I CCSGG 3 cut(s) 302, 848, 849
AsuHPI GGTGA 5 cut(s) 200, 239, 389, 656, 1083
AvaI CYCGRG 2 cut(s) 231, 847
AvaII GGWCC 1 cut(s) 433
AxyI CCTNAGG 1 cut(s) 525
BamHI GGATCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 238, 616
BbvI GCAGC 4 cut(s) 95, 284, 378, 431
BccI CCATC 2 cut(s) 882, 1054
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 1 cut(s) 312
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 3 cut(s) 302, 848, 849
BcoDI GTCTC 2 cut(s) 560, 1194
BfaI CTAG 4 cut(s) 105, 465, 549, 596
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 5 cut(s) 109, 298, 392, 445, 776
BlsI GCNGC 5 cut(s) 110, 299, 393, 446, 777
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 4 cut(s) 272, 302, 848, 849
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 2 cut(s) 231, 847
BmgT120I GGNCC 3 cut(s) 254, 433, 988
BmiI GGNNCC 3 cut(s) 456, 462, 990
BmrFI CCNGG 4 cut(s) 272, 302, 848, 849
BmsI GCATC 2 cut(s) 82, 351
BpuEI CTTGAG 3 cut(s) 584, 812, 1121
BpuMI CCSGG 3 cut(s) 302, 848, 849
BsaAI YACGTR 2 cut(s) 75, 867
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 1187
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 3 cut(s) 250, 395, 847
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bsc4I CCNNNNNNNGG 1 cut(s) 1199
Bse1I ACTGG 1 cut(s) 1094
Bse21I CCTNAGG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 250, 395, 847
BseGI GGATG 1 cut(s) 1212
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 1199
BseMII CTCAG 5 cut(s) 62, 516, 717, 726, 1186
BseNI ACTGG 1 cut(s) 1094
BseXI GCAGC 4 cut(s) 95, 284, 378, 431
Bsh1236I CGCG 2 cut(s) 787, 1147
BshFI GGCC 2 cut(s) 255, 989
BsiHKAI GWGCWC 2 cut(s) 238, 616
BsiHKCI CYCGRG 2 cut(s) 231, 847
BsiSI CCGG 4 cut(s) 20, 302, 458, 848
BslI CCNNNNNNNGG 1 cut(s) 1199
BsmAI GTCTC 2 cut(s) 560, 1194
BsmBI CGTCTC 1 cut(s) 1194
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 2 cut(s) 255, 989
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 2 cut(s) 231, 847
Bsp1286I GDGCHC 2 cut(s) 238, 616
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 5 cut(s) 22, 190, 310, 454, 1104
BspACI CCGC 1 cut(s) 775
BspANI GGCC 2 cut(s) 255, 989
BspCNI CTCAG 5 cut(s) 61, 517, 718, 727, 1185
BspFNI CGCG 2 cut(s) 787, 1147
BspHI TCATGA 1 cut(s) 1107
BspLI GGNNCC 3 cut(s) 456, 462, 990
BspPI GGATC 3 cut(s) 30, 449, 462
BspQI GCTCTTC 1 cut(s) 485
BspTI CTTAAG 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 1 cut(s) 1094
BssECI CCNNGG 3 cut(s) 250, 395, 847
BssMI GATC 5 cut(s) 22, 190, 310, 454, 1104
BssNI GRCGYC 1 cut(s) 1187
BssT1I CCWWGG 2 cut(s) 250, 395
Bst2UI CCWGG 1 cut(s) 272
Bst6I CTCTTC 2 cut(s) 366, 485
BstACI GRCGYC 1 cut(s) 1187
BstAFI CTTAAG 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 705
BstBAI YACGTR 2 cut(s) 75, 867
BstDEI CTNAG 6 cut(s) 48, 525, 726, 735, 822, 1172
BstENI CCTNNNNNAGG 1 cut(s) 1197
BstF5I GGATG 1 cut(s) 1212
BstFNI CGCG 2 cut(s) 787, 1147
BstHHI GCGC 1 cut(s) 789
BstKTI GATC 5 cut(s) 25, 193, 313, 457, 1107
BstMAI GTCTC 2 cut(s) 560, 1194
BstMBI GATC 5 cut(s) 22, 190, 310, 454, 1104
BstMWI GCNNNNNNNGC 3 cut(s) 527, 784, 805
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 4 cut(s) 270, 300, 846, 847
BstSNI TACGTA 1 cut(s) 867
BstUI CGCG 2 cut(s) 787, 1147
BstV1I GCAGC 4 cut(s) 95, 284, 378, 431
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
Bsu36I CCTNAGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 255, 989
BtsCI GGATG 1 cut(s) 1212
BtsIMutI CAGTG 1 cut(s) 1101
CciI TCATGA 1 cut(s) 1107
CfoI GCGC 1 cut(s) 789
Cfr13I GGNCC 3 cut(s) 254, 433, 988
Cfr9I CCCGGG 1 cut(s) 847
CseI GACGC 1 cut(s) 1176
Csp6I GTAC 4 cut(s) 279, 286, 628, 706
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 4 cut(s) 483, 709, 1055, 1108
CviQI GTAC 4 cut(s) 279, 286, 628, 706
DdeI CTNAG 6 cut(s) 48, 525, 726, 735, 822, 1172
DpnI GATC 5 cut(s) 24, 192, 312, 456, 1106
DpnII GATC 5 cut(s) 22, 190, 310, 454, 1104
DraI TTTAAA 3 cut(s) 472, 603, 966
DrdI GACNNNNNNGTC 2 cut(s) 851, 1039
DseDI GACNNNNNNGTC 2 cut(s) 851, 1039
Eam1104I CTCTTC 2 cut(s) 366, 485
EarI CTCTTC 2 cut(s) 366, 485
Ecl136II GAGCTC 1 cut(s) 236
Eco105I TACGTA 1 cut(s) 867
Eco130I CCWWGG 2 cut(s) 250, 395
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 433
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 978
Eco72I CACGTG 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 525
Eco88I CYCGRG 2 cut(s) 231, 847
EcoICRI GAGCTC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 1197
EcoO109I RGGNCCY 2 cut(s) 254, 988
EcoRI GAATTC 1 cut(s) 1064
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 250, 395
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 250, 395
Esp3I CGTCTC 1 cut(s) 1194
FaeI CATG 4 cut(s) 486, 712, 1058, 1111
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 4 cut(s) 482, 708, 1054, 1107
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 5 cut(s) 109, 298, 392, 445, 776
FokI GGATG 1 cut(s) 1199
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 5 cut(s) 109, 298, 392, 445, 776
FspBI CTAG 4 cut(s) 105, 465, 549, 596
GlaI GCGC 1 cut(s) 788
GluI GCNGC 5 cut(s) 109, 298, 392, 445, 776
HaeIII GGCC 2 cut(s) 255, 989
HapII CCGG 4 cut(s) 20, 302, 458, 848
HgaI GACGC 1 cut(s) 1176
HhaI GCGC 1 cut(s) 789
Hin1I GRCGYC 1 cut(s) 1187
Hin1II CATG 4 cut(s) 486, 712, 1058, 1111
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HinfI GANTC 2 cut(s) 852, 1142
HpaII CCGG 4 cut(s) 20, 302, 458, 848
HphI GGTGA 5 cut(s) 200, 239, 389, 656, 1083
Hpy188I TCNGA 3 cut(s) 51, 736, 997
Hpy188III TCNNGA 8 cut(s) 26, 359, 524, 638, 665, 982, 1044, 1108
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 4 cut(s) 635, 866, 979, 1002
HpyCH4IV ACGT 2 cut(s) 74, 866
HpyCH4V TGCA 3 cut(s) 292, 753, 1002
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 784, 805
HpyF3I CTNAG 6 cut(s) 48, 525, 726, 735, 822, 1172
HpySE526I ACGT 2 cut(s) 74, 866
Hsp92I GRCGYC 1 cut(s) 1187
Hsp92II CATG 4 cut(s) 486, 712, 1058, 1111
HspAI GCGC 1 cut(s) 787
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 5 cut(s) 22, 190, 310, 454, 1104
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 3 cut(s) 466, 526, 619
Lsp1109I GCAGC 4 cut(s) 95, 284, 378, 431
LweI GCATC 2 cut(s) 82, 351
MaeI CTAG 4 cut(s) 105, 465, 549, 596
MaeII ACGT 2 cut(s) 74, 866
MaeIII GTNAC 3 cut(s) 202, 1132, 1159
MalI GATC 5 cut(s) 24, 192, 312, 456, 1106
MboI GATC 5 cut(s) 22, 190, 310, 454, 1104
MboII GAAGA 7 cut(s) 236, 383, 494, 502, 923, 929, 1039
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 2 cut(s) 238, 616
MlyI GAGTC 2 cut(s) 861, 1151
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 6 cut(s) 57, 327, 367, 506, 520, 789
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 7 cut(s) 471, 602, 624, 651, 965, 1017, 1222
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 4 cut(s) 20, 302, 458, 848
MspR9I CCNGG 4 cut(s) 272, 302, 848, 849
MunI CAATTG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 2 cut(s) 787, 1147
MwoI GCNNNNNNNGC 3 cut(s) 527, 784, 805
NciI CCSGG 3 cut(s) 302, 848, 849
NdeII GATC 5 cut(s) 22, 190, 310, 454, 1104
NlaIII CATG 4 cut(s) 486, 712, 1058, 1111
NlaIV GGNNCC 3 cut(s) 456, 462, 990
NmuCI GTSAC 2 cut(s) 202, 1159
PaeR7I CTCGAG 1 cut(s) 231
PagI TCATGA 1 cut(s) 1107
PciSI GCTCTTC 1 cut(s) 485
PctI GAATGC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 354
PflFI GACNNNGTC 1 cut(s) 571
PkrI GCNGC 5 cut(s) 110, 299, 393, 446, 777
PleI GAGTC 2 cut(s) 860, 1150
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
PpsI GAGTC 2 cut(s) 860, 1150
Ppu21I YACGTR 2 cut(s) 75, 867
PsiI TTATAA 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 270
PspCI CACGTG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 456, 462, 990
PspPI GGNCC 3 cut(s) 254, 433, 988
PspXI VCTCGAGB 1 cut(s) 231
PsuI RGATCY 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 571
RsaI GTAC 4 cut(s) 280, 287, 629, 707
RsaNI GTAC 4 cut(s) 279, 286, 628, 706
SacI GAGCTC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 7 cut(s) 471, 602, 624, 651, 965, 1017, 1222
SatI GCNGC 5 cut(s) 109, 298, 392, 445, 776
Sau3AI GATC 5 cut(s) 22, 190, 310, 454, 1104
Sau96I GGNCC 3 cut(s) 254, 433, 988
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 2 cut(s) 861, 1151
ScrFI CCNGG 4 cut(s) 272, 302, 848, 849
SduI GDGCHC 2 cut(s) 238, 616
SfaNI GCATC 2 cut(s) 82, 351
Sfr274I CTCGAG 1 cut(s) 231
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 231
SmaI CCCGGG 1 cut(s) 849
SmlI CTYRAG 5 cut(s) 231, 563, 623, 791, 1100
SmoI CTYRAG 5 cut(s) 231, 563, 623, 791, 1100
SnaBI TACGTA 1 cut(s) 867
SsiI CCGC 1 cut(s) 775
SspMI CTAG 4 cut(s) 105, 465, 549, 596
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 4 cut(s) 270, 300, 846, 847
StyI CCWWGG 2 cut(s) 250, 395
TaiI ACGT 2 cut(s) 77, 869
TaqI TCGA 4 cut(s) 162, 232, 332, 983
TatI WGTACW 3 cut(s) 278, 627, 705
TauI GCSGC 1 cut(s) 778
Tru1I TTAA 7 cut(s) 471, 602, 624, 651, 965, 1017, 1222
Tru9I TTAA 7 cut(s) 471, 602, 624, 651, 965, 1017, 1222
TscAI CASTG 1 cut(s) 1101
TseFI GTSAC 2 cut(s) 202, 1159
TseI GCWGC 4 cut(s) 108, 297, 391, 444
Tsp45I GTSAC 2 cut(s) 202, 1159
TspDTI ATGAA 6 cut(s) 471, 494, 732, 932, 1057, 1201
TspGWI ACGGA 2 cut(s) 599, 1178
TspMI CCCGGG 1 cut(s) 847
TspRI CASTG 1 cut(s) 1101
Tth111I GACNNNGTC 1 cut(s) 571
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 433
XagI CCTNNNNNAGG 1 cut(s) 1197
XapI RAATTY 2 cut(s) 1064, 1073
XhoI CTCGAG 1 cut(s) 231
XmaI CCCGGG 1 cut(s) 847
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 4 cut(s) 105, 465, 549, 596
ZrmI AGTACT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.