Prupe.1G299200_v2.0.a1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007383
Physical Location & Seq
Forward (+)
29448335 .. 29450935
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G299200.3

Sequence Viewer

Length: 1266 bp
ATGGGTGATCTATTGGATCGTGATTTGATAAGCAATCTGCCTCAGAGCATTATAGAGAGCATTCTCACGCGTCTCCCAATTAGAGATGCTATAAGAACTAGCTGCTTATCAACGAAATGGAGATACAAATGGACTACGCTCACCCATCTTGCATTCGACGAAAAATGTGTCACTCTATCTAATGACCGAACTCTTGTCGAAAGAAGCCTTATAGACTTTATCACTCGGGCTCTCTTTCTTCACCAAGGACCCGTTCACAAGTTCCAGCTTTCTACTTCCTACTTGCAGAGCTGCCCAGATATCGATCAATGGATACTTTTCCTTTCAAGGAATGACATAAAAGAATTGGTTCTTGAATTGGGAGAAGGCGAGTGGTTTAGGGTGCCCTCATGCCTTTTTTATTGTAAAAAGTTGACCCGTTTGGAGCTATTTCGATGTGAGTTGGATCCACCTCCTGCTTTTAAGGGATTTTTGTGTTTGAAGAGTCTCAATCTTCATCAAGTTTTGGTTGCTCCTGATGCAATTGAAAGTCTTATTTCTGGTTGCCCTCTACTTGAGAGTCTGGCTTTGTCATACTTTGATAGCTTAGCTCTAAATATCCGTGCCCCAAATCTCAAGTACTTATGTCTTGAAGGTGAATTTAAGGACATATGTCTTGAAAATACCCCACTTTTGGTTGCCATATCTGTTGCTATGTATGTGACTGATGATATTGCCGAGCACTTTGAGCAAAGTTCAAATTGCAATTTTATCAAGTTTCTTGGTGGCATACCACGTCTCGAGAGGCTTGTTGGGCATATCTACTTTACAAAGTATTTGAGTATAGGTAATGACCAGGGAATCCTTCCGATTACTTATAACCATTTAAAGATTATTGAATTATATCAAGTAAGTTTTGAAGATATGAAAGAGATACTAGTTGTTCTTCGCTTGATTACAAACTCTCCTAATTTACAGGAACTTCAAATCTCGGGTTCCTCAAACACTTTAGCAGCTATAGAAGCATCCGATTTGGATTTCTGGGAGAAACAATGCCCTTCCGATTGCGCATTTGGAAGACTTAAAGTTGTGAAGATGACAGATATGTCTGGAGTGCCACATGAGATGGAATTCATCAAGTTTTTGTTGAAGAAATCACCAGTGCTTGAGACCATGAGCATTACGCCGTATGCATATGTTTTAGATGGACGTTTGAATATGCTGATTGAGTTGGTGAGCTTTAAACGGGCATCTCCTGAAGCAGAAATTTTATTCATCCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

422

Amino Acids

48.05

Weight (kDa)

5.27

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AasI GACNNNNNNGTC 1 cut(s) 1084
Acc16I TGCGCA 1 cut(s) 1048
AccB1I GGYRCC 1 cut(s) 382
AccII CGCG 1 cut(s) 70
AclWI GGATC 3 cut(s) 24, 440, 453
AcsI RAATTY 3 cut(s) 638, 1109, 1245
AcuI CTGAAG 1 cut(s) 1257
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 673
AflIII ACRYGT 1 cut(s) 68
AhlI ACTAGT 1 cut(s) 916
AjiI CACGTC 1 cut(s) 776
AjnI CCWGG 1 cut(s) 834
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 8 cut(s) 102, 268, 291, 427, 585, 590, 995, 1218
AluI AGCT 8 cut(s) 102, 268, 291, 427, 585, 590, 995, 1218
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 4 cut(s) 77, 491, 782, 1142
AlwI GGATC 3 cut(s) 24, 440, 453
Ama87I CYCGRG 3 cut(s) 225, 779, 970
ApeKI GCWGC 3 cut(s) 102, 291, 992
ApoI RAATTY 3 cut(s) 638, 1109, 1245
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 1049
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 6 cut(s) 17, 133, 233, 647, 1128, 1225
AvaI CYCGRG 3 cut(s) 225, 779, 970
AvaII GGWCC 1 cut(s) 248
BaeGI GKGCMC 2 cut(s) 387, 607
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 1063
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 3 cut(s) 89, 278, 1004
BccI CCATC 3 cut(s) 153, 1099, 1178
BceAI ACGGC 1 cut(s) 1150
BciT130I CCWGG 1 cut(s) 836
BciVI GTATCC 1 cut(s) 306
BcoDI GTCTC 4 cut(s) 77, 491, 782, 1142
BcuI ACTAGT 1 cut(s) 916
BfaI CTAG 2 cut(s) 99, 917
BfmI CTRYAG 1 cut(s) 996
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 3 cut(s) 103, 292, 993
BlpI GCTNAGC 1 cut(s) 586
BlsI GCNGC 3 cut(s) 104, 293, 994
BmcAI AGTACT 1 cut(s) 620
Bme1390I CCNGG 1 cut(s) 836
Bme18I GGWCC 1 cut(s) 248
BmeT110I CYCGRG 3 cut(s) 225, 779, 970
BmgBI CACGTC 1 cut(s) 776
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 4 cut(s) 250, 384, 447, 976
BmrFI CCNGG 1 cut(s) 836
BmsI GCATC 4 cut(s) 76, 508, 1013, 1238
BoxI GACNNNNGTC 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 1063
BpmI CTGGAG 1 cut(s) 1110
Bpu1102I GCTNAGC 1 cut(s) 586
BpuEI CTTGAG 3 cut(s) 575, 599, 1166
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 1142
BsaJI CCNNGG 2 cut(s) 244, 835
BsaXI ACNNNNNCTCC 2 cut(s) 928, 958
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 1 cut(s) 1139
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 836
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 244, 835
BseGI GGATG 2 cut(s) 1004, 1254
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 1139
BseSI GKGCMC 2 cut(s) 387, 607
BseXI GCAGC 3 cut(s) 89, 278, 1004
Bsh1236I CGCG 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 382
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 723
BsiHKCI CYCGRG 3 cut(s) 225, 779, 970
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 4 cut(s) 77, 491, 782, 1142
BsmBI CGTCTC 2 cut(s) 77, 782
BsmI GAATGC 2 cut(s) 60, 152
Bso31I GGTCTC 1 cut(s) 1142
BsoBI CYCGRG 3 cut(s) 225, 779, 970
Bsp1286I GDGCHC 4 cut(s) 232, 387, 607, 723
Bsp143I GATC 4 cut(s) 7, 16, 304, 445
Bsp1720I GCTNAGC 1 cut(s) 586
BspCNI CTCAG 1 cut(s) 55
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 4 cut(s) 250, 384, 447, 976
BspPI GGATC 3 cut(s) 24, 440, 453
BspT107I GGYRCC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 1142
BsrI ACTGG 1 cut(s) 1139
BssECI CCNNGG 2 cut(s) 244, 835
BssMI GATC 4 cut(s) 7, 16, 304, 445
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 836
Bst6I CTCTTC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 42, 586
BstF5I GGATG 2 cut(s) 1004, 1254
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 4 cut(s) 10, 19, 307, 448
BstMAI GTCTC 4 cut(s) 77, 491, 782, 1142
BstMBI GATC 4 cut(s) 7, 16, 304, 445
BstMWI GCNNNNNNNGC 4 cut(s) 518, 727, 793, 1001
BstNI CCWGG 1 cut(s) 836
BstPAI GACNNNNGTC 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 834
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 2 cut(s) 387, 607
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 89, 278, 1004
BstV2I GAAGAC 1 cut(s) 1063
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 303
BsuI GTATCC 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 303
BtrI CACGTC 1 cut(s) 776
BtsCI GGATG 2 cut(s) 1004, 1254
BtsIMutI CAGTG 1 cut(s) 1146
CfoI GCGC 1 cut(s) 1049
Cfr13I GGNCC 1 cut(s) 248
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 619
CviAII CATG 3 cut(s) 390, 1100, 1153
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 2 cut(s) 42, 586
DpnI GATC 4 cut(s) 9, 18, 306, 447
DpnII GATC 4 cut(s) 7, 16, 304, 445
DraI TTTAAA 2 cut(s) 867, 1222
DrdI GACNNNNNNGTC 1 cut(s) 1084
DseDI GACNNNNNNGTC 1 cut(s) 1084
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 1142
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 1257
Eco88I CYCGRG 3 cut(s) 225, 779, 970
EcoO109I RGGNCCY 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 1109
EcoRII CCWGG 1 cut(s) 834
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 1174
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 244
Esp3I CGTCTC 2 cut(s) 77, 782
FaeI CATG 3 cut(s) 393, 1103, 1156
FatI CATG 3 cut(s) 389, 1099, 1152
FauNDI CATATG 2 cut(s) 650, 1174
Fnu4HI GCNGC 3 cut(s) 103, 292, 993
FokI GGATG 2 cut(s) 991, 1241
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 103, 292, 993
FspBI CTAG 2 cut(s) 99, 917
FspI TGCGCA 1 cut(s) 1048
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 3 cut(s) 103, 292, 993
GsuI CTGGAG 1 cut(s) 1110
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 1049
Hin1II CATG 3 cut(s) 393, 1103, 1156
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 3 cut(s) 484, 559, 840
HphI GGTGA 6 cut(s) 17, 133, 233, 647, 1128, 1225
Hpy166II GTNNAC 2 cut(s) 256, 414
Hpy188I TCNGA 4 cut(s) 45, 849, 1009, 1042
Hpy188III TCNNGA 9 cut(s) 20, 353, 515, 629, 656, 779, 781, 1089, 1235
Hpy8I GTNNAC 2 cut(s) 256, 414
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 359, 626, 854, 1047
HpyCH4IV ACGT 2 cut(s) 775, 1189
HpyCH4V TGCA 5 cut(s) 152, 286, 521, 744, 1172
HpyF10VI GCNNNNNNNGC 4 cut(s) 518, 727, 793, 1001
HpyF3I CTNAG 2 cut(s) 42, 586
HpySE526I ACGT 2 cut(s) 775, 1189
Hsp92II CATG 3 cut(s) 393, 1103, 1156
HspAI GCGC 1 cut(s) 1047
Kzo9I GATC 4 cut(s) 7, 16, 304, 445
LmnI GCTCC 2 cut(s) 424, 517
Lsp1109I GCAGC 3 cut(s) 89, 278, 1004
LweI GCATC 4 cut(s) 76, 508, 1013, 1238
MaeI CTAG 2 cut(s) 99, 917
MaeII ACGT 2 cut(s) 775, 1189
MaeIII GTNAC 2 cut(s) 169, 700
MalI GATC 4 cut(s) 9, 18, 306, 447
MboI GATC 4 cut(s) 7, 16, 304, 445
MboII GAAGA 8 cut(s) 230, 485, 493, 911, 917, 1068, 1084, 1141
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 4 cut(s) 232, 387, 607, 723
MluI ACGCGT 1 cut(s) 68
MlyI GAGTC 2 cut(s) 493, 568
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 6 cut(s) 51, 397, 462, 558, 777, 988
Mph1103I ATGCAT 1 cut(s) 1174
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 6 cut(s) 462, 642, 866, 1062, 1221, 1264
MspR9I CCNGG 1 cut(s) 836
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 2 cut(s) 60, 152
MvaI CCWGG 1 cut(s) 836
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 4 cut(s) 518, 727, 793, 1001
NdeI CATATG 2 cut(s) 650, 1174
NdeII GATC 4 cut(s) 7, 16, 304, 445
NlaIII CATG 3 cut(s) 393, 1103, 1156
NlaIV GGNNCC 4 cut(s) 250, 384, 447, 976
NmeAIII GCCGAG 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 169, 700
NsbI TGCGCA 1 cut(s) 1048
NsiI ATGCAT 1 cut(s) 1174
PaeR7I CTCGAG 1 cut(s) 779
PctI GAATGC 2 cut(s) 60, 152
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 840
PkrI GCNGC 3 cut(s) 104, 293, 994
PleI GAGTC 2 cut(s) 492, 567
PpsI GAGTC 2 cut(s) 492, 567
PpuMI RGGWCCY 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 651
PsiI TTATAA 1 cut(s) 858
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 834
PspGI CCWGG 1 cut(s) 834
PspN4I GGNNCC 4 cut(s) 250, 384, 447, 976
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
SaqAI TTAA 6 cut(s) 462, 642, 866, 1062, 1221, 1264
SatI GCNGC 3 cut(s) 103, 292, 993
Sau3AI GATC 4 cut(s) 7, 16, 304, 445
Sau96I GGNCC 1 cut(s) 248
ScaI AGTACT 1 cut(s) 620
SchI GAGTC 2 cut(s) 493, 568
ScrFI CCNGG 1 cut(s) 836
SduI GDGCHC 4 cut(s) 232, 387, 607, 723
SfaNI GCATC 4 cut(s) 76, 508, 1013, 1238
SfcI CTRYAG 1 cut(s) 996
Sfr274I CTCGAG 1 cut(s) 779
SinI GGWCC 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 779
SmlI CTYRAG 4 cut(s) 554, 614, 779, 1145
SmoI CTYRAG 4 cut(s) 554, 614, 779, 1145
SpeI ACTAGT 1 cut(s) 916
SspMI CTAG 2 cut(s) 99, 917
StyD4I CCNGG 1 cut(s) 834
StyI CCWWGG 1 cut(s) 244
TaiI ACGT 2 cut(s) 778, 1192
TaqI TCGA 5 cut(s) 156, 198, 303, 433, 780
TaqII GACCGA 1 cut(s) 201
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 1 cut(s) 840
Tru1I TTAA 6 cut(s) 462, 642, 866, 1062, 1221, 1264
Tru9I TTAA 6 cut(s) 462, 642, 866, 1062, 1221, 1264
TscAI CASTG 1 cut(s) 1146
TseFI GTSAC 2 cut(s) 169, 700
TseI GCWGC 3 cut(s) 102, 291, 992
Tsp45I GTSAC 2 cut(s) 169, 700
TspDTI ATGAA 4 cut(s) 485, 920, 1102, 1243
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 1 cut(s) 1146
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 3 cut(s) 638, 1109, 1245
XhoI CTCGAG 1 cut(s) 779
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 99, 917
ZrmI AGTACT 1 cut(s) 620
Zsp2I ATGCAT 1 cut(s) 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.