Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007383

Physical Location & Seq

Genomic Coordinates Reverse (-)

62794522 .. 62797133

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG373700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCGAATGGACGATAAACCGGATCGTGATTTGATAAGCAATCTGCCTCAGAGCATTATAGAGAGCATTCTCACGTGTTTGCCAATAGGAGATGCTATAAGAACTAGCTGCTTGTCAAGGAAATGGAGATACAAATGGACTACACTCACTCATCTTGTATTCGACGAAAAATGTGTGGCTCAATCTGGTGATCAAGTAGTTGTCACAAAAAGCCTTATCAATTTTATAACTCGAGCTCTCTTTCTTCACCAAGGCCCTATTCACAAGTTCCAGGTCTGTACTTCGTACTTGCAGAGCTGCCCGGATATAGATCAATGGATACTTTTCCTTTCGAGGAATGGCATCAAAGAATTGGTTCTTGAATTGGGAGAAGAGGGTGAGTGGTTTAGGCTGCCTTGGTGTCTTTTTTATTGTGAAAAGCTGACCCGTTTGGACCTATATCGCTGCGAGTTGGATCCGGCTCCTAGTTTTAAAGGATTTTCATGTTTGAAGAGCCTCAATCTTCATCAAGTTTTGGTTGCTCCTGAGGCAATTGAAAGTCTTATTTCTAGTTGCCCGCTACTTGAGACCTTGTCTTTGGCATACTTTGATAGCCTAGCTTTAAATATCCGTGCTCCAAATCTTAAGTACTTATGTCTTGAAGGTGAGTTTAAGGACATATCTCTTGAAAATACTCCACTATTGGTTGATTTATCTGTTGCTTTGTACATGACTGATGAAAATGCTGAGAACTCTGAGCAAAGTTCAAATTGCAAGTTTATCAAGTTTCTTGGCGGCATACCACGCCTTGAGAGGCTTGTTGGGCATATCTACTTTACTAAGTATTTGAGTATAGGTAAAGACCCGGGAGTCCTTCCAATTACATATAACCATCTAAAGATTATTGAATTATATCAAGTGAGTTTTGAAGATATGAAAGAGATACTTGTTGTTCTTCGCTTGATTACAAACTCTCCTAATTTAAAGGAACTTCAACTCTCGCTTTACCCTTCAGTTAATAGTAAAGATTACTGCCAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

340

Amino Acids

38.95

Weight (kDa)

5.5

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	12 - 48	2.3e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	91 - 198	7.3e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	103 - 325	3.8e-20	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13570 AT1G13570 AT1G13570
fragaria_vesca	FvH4_4g28670 FvH4_4g28670 FvH4_4g28670 FvH4_4g28670
malus_domestica	MD13G1052800.v1.1 MD16G1051800.v1.1
prunus_persica	Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1
pyrus_communis	pycom13g04730 pycom16g04550
rosa_chinensis	RchiOBHm_Chr4g0436781
rosa_laevigata	RLG00000006496
rosa_multiflora	Rmu_co8098618.1_g000001 Rmu_sc0001837.1_g000005
rosa_roxburghii	Rroxscaffold_5G00377850
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350500 Rh4BG359400 Rh4CG373700 Rh4DG353400
rosa_wichuraiana	Rw4G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AasI	GACNNNNNNGTC	1 cut(s)	848
AciI	CCGC	2 cut(s)	557, 774
AclWI	GGATC	3 cut(s)	30, 449, 462
AcuI	CTGAAG	1 cut(s)	975
AcvI	CACGTG	1 cut(s)	75
AfaI	GTAC	4 cut(s)	280, 287, 629, 707
AflII	CTTAAG	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	9 cut(s)	362, 490, 536, 641, 668, 747, 887, 908, 974
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	5 cut(s)	108, 236, 297, 421, 599
AluI	AGCT	5 cut(s)	108, 236, 297, 421, 599
Alw21I	GWGCWC	2 cut(s)	238, 616
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	3 cut(s)	30, 449, 462
Ama87I	CYCGRG	2 cut(s)	231, 844
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	4 cut(s)	108, 297, 391, 444
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	254, 433
AsuC2I	CCSGG	3 cut(s)	302, 845, 846
AsuHPI	GGTGA	4 cut(s)	200, 239, 389, 656
AvaI	CYCGRG	2 cut(s)	231, 844
AvaII	GGWCC	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	525
BamHI	GGATCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	238
BbrPI	CACGTG	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	238, 616
BbvI	GCAGC	4 cut(s)	95, 284, 378, 431
BccI	CCATC	1 cut(s)	879
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	3 cut(s)	302, 845, 846
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	4 cut(s)	105, 465, 549, 596
BfrI	CTTAAG	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
BlsI	GCNGC	5 cut(s)	110, 299, 393, 446, 776
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	4 cut(s)	272, 302, 845, 846
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	2 cut(s)	231, 844
BmgT120I	GGNCC	2 cut(s)	254, 433
BmiI	GGNNCC	2 cut(s)	456, 462
BmrFI	CCNGG	4 cut(s)	272, 302, 845, 846
BmsI	GCATC	2 cut(s)	82, 351
BpuEI	CTTGAG	2 cut(s)	584, 809
BpuMI	CCSGG	3 cut(s)	302, 845, 846
BsaAI	YACGTR	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	3 cut(s)	250, 395, 844
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	937, 967
Bse21I	CCTNAGG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	250, 395, 844
BseJI	GATNNNNATC	1 cut(s)	309
BseMII	CTCAG	4 cut(s)	62, 516, 717, 726
BseXI	GCAGC	4 cut(s)	95, 284, 378, 431
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	238, 616
BsiHKCI	CYCGRG	2 cut(s)	231, 844
BsiSI	CCGG	4 cut(s)	20, 302, 458, 845
BsmAI	GTCTC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	560
BsoBI	CYCGRG	2 cut(s)	231, 844
Bsp1286I	GDGCHC	2 cut(s)	238, 616
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	4 cut(s)	22, 190, 310, 454
BspACI	CCGC	2 cut(s)	557, 774
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	4 cut(s)	61, 517, 718, 727
BspLI	GGNNCC	2 cut(s)	456, 462
BspPI	GGATC	3 cut(s)	30, 449, 462
BspQI	GCTCTTC	1 cut(s)	485
BspTI	CTTAAG	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	705
BssECI	CCNNGG	3 cut(s)	250, 395, 844
BssMI	GATC	4 cut(s)	22, 190, 310, 454
BssT1I	CCWWGG	2 cut(s)	250, 395
Bst2UI	CCWGG	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	366, 485
BstAFI	CTTAAG	1 cut(s)	623
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	5 cut(s)	48, 525, 726, 735, 819
BstKTI	GATC	4 cut(s)	25, 193, 313, 457
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	4 cut(s)	22, 190, 310, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	4 cut(s)	270, 300, 843, 844
BstV1I	GCAGC	4 cut(s)	95, 284, 378, 431
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	254, 433
Cfr9I	CCCGGG	1 cut(s)	844
Csp6I	GTAC	4 cut(s)	279, 286, 628, 706
CviAII	CATG	2 cut(s)	483, 709
CviQI	GTAC	4 cut(s)	279, 286, 628, 706
DdeI	CTNAG	5 cut(s)	48, 525, 726, 735, 819
DpnI	GATC	4 cut(s)	24, 192, 312, 456
DpnII	GATC	4 cut(s)	22, 190, 310, 454
DraI	TTTAAA	3 cut(s)	472, 603, 963
DrdI	GACNNNNNNGTC	1 cut(s)	848
DseDI	GACNNNNNNGTC	1 cut(s)	848
Eam1104I	CTCTTC	2 cut(s)	366, 485
EarI	CTCTTC	2 cut(s)	366, 485
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	250, 395
Eco24I	GRGCYC	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	975
Eco72I	CACGTG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	2 cut(s)	231, 844
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	250, 395
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	2 cut(s)	250, 395
FaeI	CATG	2 cut(s)	486, 712
FalI	AAGNNNNNCTT	2 cut(s)	909, 941
FatI	CATG	2 cut(s)	482, 708
FauI	CCCGC	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
FspBI	CTAG	4 cut(s)	105, 465, 549, 596
GluI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	4 cut(s)	20, 302, 458, 845
Hin1II	CATG	2 cut(s)	486, 712
HinfI	GANTC	1 cut(s)	849
HpaII	CCGG	4 cut(s)	20, 302, 458, 845
HphI	GGTGA	4 cut(s)	200, 239, 389, 656
Hpy188I	TCNGA	2 cut(s)	51, 736
Hpy188III	TCNNGA	5 cut(s)	26, 359, 524, 638, 665
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	635, 863, 999
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	292, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
HpyF3I	CTNAG	5 cut(s)	48, 525, 726, 735, 819
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	486, 712
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	22, 190, 310, 454
LguI	GCTCTTC	1 cut(s)	485
LmnI	GCTCC	3 cut(s)	466, 526, 619
LpnPI	CCDG	8 cut(s)	33, 171, 257, 284, 315, 471, 537, 858
Lsp1109I	GCAGC	4 cut(s)	95, 284, 378, 431
LweI	GCATC	2 cut(s)	82, 351
MaeI	CTAG	4 cut(s)	105, 465, 549, 596
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	4 cut(s)	24, 192, 312, 456
MboI	GATC	4 cut(s)	22, 190, 310, 454
MboII	GAAGA	6 cut(s)	236, 383, 494, 502, 920, 926
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	238, 616
MluCI	AATT	8 cut(s)	220, 350, 362, 531, 748, 858, 887, 958
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	6 cut(s)	57, 327, 367, 506, 520, 786
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	6 cut(s)	471, 602, 624, 651, 962, 996
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	4 cut(s)	20, 302, 458, 845
MspR9I	CCNGG	4 cut(s)	272, 302, 845, 846
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
NciI	CCSGG	3 cut(s)	302, 845, 846
NdeII	GATC	4 cut(s)	22, 190, 310, 454
NlaIII	CATG	2 cut(s)	486, 712
NlaIV	GGNNCC	2 cut(s)	456, 462
NmuCI	GTSAC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	485
PctI	GAATGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	354
PflFI	GACNNNGTC	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	110, 299, 393, 446, 776
PleI	GAGTC	1 cut(s)	857
PmaCI	CACGTG	1 cut(s)	75
PmlI	CACGTG	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	857
Ppu21I	YACGTR	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	270
PspCI	CACGTG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	456, 462
PspPI	GGNCC	2 cut(s)	254, 433
PspXI	VCTCGAGB	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	454
PsyI	GACNNNGTC	1 cut(s)	571
RsaI	GTAC	4 cut(s)	280, 287, 629, 707
RsaNI	GTAC	4 cut(s)	279, 286, 628, 706
SacI	GAGCTC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	6 cut(s)	471, 602, 624, 651, 962, 996
SatI	GCNGC	5 cut(s)	109, 298, 392, 445, 775
Sau3AI	GATC	4 cut(s)	22, 190, 310, 454
Sau96I	GGNCC	2 cut(s)	254, 433
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	4 cut(s)	272, 302, 845, 846
SduI	GDGCHC	2 cut(s)	238, 616
SfaNI	GCATC	2 cut(s)	82, 351
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	231
SmaI	CCCGGG	1 cut(s)	846
SmlI	CTYRAG	4 cut(s)	231, 563, 623, 788
SmoI	CTYRAG	4 cut(s)	231, 563, 623, 788
Sse9I	AATT	8 cut(s)	220, 350, 362, 531, 748, 858, 887, 958
SsiI	CCGC	2 cut(s)	557, 774
SspMI	CTAG	4 cut(s)	105, 465, 549, 596
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	4 cut(s)	270, 300, 843, 844
StyI	CCWWGG	2 cut(s)	250, 395
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	3 cut(s)	162, 232, 332
TasI	AATT	8 cut(s)	220, 350, 362, 531, 748, 858, 887, 958
TatI	WGTACW	3 cut(s)	278, 627, 705
TauI	GCSGC	1 cut(s)	777
Tru1I	TTAA	6 cut(s)	471, 602, 624, 651, 962, 996
Tru9I	TTAA	6 cut(s)	471, 602, 624, 651, 962, 996
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	4 cut(s)	108, 297, 391, 444
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	471, 494, 732, 929
TspGWI	ACGGA	1 cut(s)	599
TspMI	CCCGGG	1 cut(s)	844
Tth111I	GACNNNGTC	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	231
XmaI	CCCGGG	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	4 cut(s)	105, 465, 549, 596
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.