Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007383

Physical Location & Seq

Genomic Coordinates Reverse (-)

29228907 .. 29231403

Gene Structure 2497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCATATGGGGGATAAACCAGATCTTGATTTGATAAGCAATCTGCCTCAGAGCATTATAGAGAGCATTCTCACGTATTTGCCTATAGGAGATGCTGTAAGAACTAGCTGCTTGTCAAGGAAATGGAGATACAAATGGACTACACTGACTCATCTTGTATTCGACGAGAAATGTGTTGCTCAAACCGGTGACCAAGTAGCTGTTGAAAAAAGCCTTGTTAATTTTATAACTCGAGCTCTCTTTCTTCACCAAGGCCCTATTCACAAGTTCCAGGTCTGTACTTCGATCTTGCAGAGCTGCCCGGATATAGATCAATGGATACTTTTCATTTCAAGGAATGGCATCAAAGAAGTGGTTCTTGAATTGGGAGAAGATGGCGAGTGGTTTAGGGTGCCCTGGTGTCTTTTTCATTGTGAAAGGCTGACCCGTCTGGACCTATTTCGCTGCGAGTTGGATCCACCTCCTTGTTTTAAAGGATTTCCGTGTTTGAAGAGCCTCAATCTTCATCAAGTTTTGGTTGCTCCTGAGGCAATTGAAAGTCTTATTTCTAGTTGCCCGCTACTTGAGACTCTGTCTTTGTCATACTTTGATAGCCTAGCTTTAAATATCTGTGCTCCAAATCTCAAGCACTTATGTCTTGAAGGTGAGTTTAAGGACATATCTCTTGAAAATACTCCGCTTTTGGTTGATCTATCTGTTGCTTTGTACATGACTGATGAAAACGGAGAGAACCCTGAGCATAGTTCAAATTGCAAGTTTATCAAGTTTCTTGGTGGCATACCACGCCTTGAGAGGCTTGTTGGGCATATCTACTTTACTAAGTATTTGAGTATAGGTAAAGACCCAGGAGTTCTTCCAATTACATATAACCATCTAAAGATAATTGAATTATATCAAGTGAGTTTTGAAGATATGAAAGAGATACTAGTTGTTCTTCGCTTGATTACAAACTCTCCTAATTTAAAGGAACTTCAACTCTCGGGATCCTCTTTAACATCAATGGAATCACCCGATTTGGACTTCTGGGAGAAAGAAGGCCCTTCGGATTGCACATTCCACAAACTTAAAGTCGTGAAGATGACAGATATATCTGGACTGCCACATGAGATGGAATTCATCAAATTTCTGTTGAGAAAATCACCGGTGCTTGAGGTCATGAGTATCATGCCTTGTGTGTTTGTTACAATGGAGGCACGTTTGATAATAGTCACCGAGTTGCTGAGTTTTACAAGGGCATCTCCTAAAGCTGGAATTGTATTCATCCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

424

Amino Acids

48.07

Weight (kDa)

5.45

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	12 - 48	8.4e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	99 - 200	3.5e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	103 - 325	8.8e-18	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	347 - 388	4.2e-07	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13570 AT1G13570 AT1G13570
fragaria_vesca	FvH4_4g28670 FvH4_4g28670 FvH4_4g28670 FvH4_4g28670
malus_domestica	MD13G1052800.v1.1 MD16G1051800.v1.1
prunus_persica	Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1
pyrus_communis	pycom13g04730 pycom16g04550
rosa_chinensis	RchiOBHm_Chr4g0436781
rosa_laevigata	RLG00000006496
rosa_multiflora	Rmu_co8098618.1_g000001 Rmu_sc0001837.1_g000005
rosa_roxburghii	Rroxscaffold_5G00377850
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350500 Rh4BG359400 Rh4CG373700 Rh4DG353400
rosa_wichuraiana	Rw4G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	391
AciI	CCGC	2 cut(s)	557, 677
AclWI	GGATC	4 cut(s)	449, 462, 978, 991
AcsI	RAATTY	2 cut(s)	1112, 1121
AfaI	GTAC	2 cut(s)	280, 707
AfiI	CCNNNNNNNGG	1 cut(s)	1247
AgeI	ACCGGT	2 cut(s)	185, 1141
AhlI	ACTAGT	1 cut(s)	925
AjnI	CCWGG	3 cut(s)	270, 395, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	6 cut(s)	108, 200, 236, 297, 599, 1247
AluI	AGCT	6 cut(s)	108, 200, 236, 297, 599, 1247
Alw21I	GWGCWC	2 cut(s)	238, 616
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	4 cut(s)	449, 462, 978, 991
Ama87I	CYCGRG	2 cut(s)	231, 979
AoxI	GGCC	2 cut(s)	253, 1036
ApeKI	GCWGC	3 cut(s)	108, 297, 444
ApoI	RAATTY	2 cut(s)	1112, 1121
ArsI	GACNNNNNNTTYG	4 cut(s)	559, 591, 1053, 1085
AsiGI	ACCGGT	2 cut(s)	185, 1141
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	3 cut(s)	254, 433, 1037
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	6 cut(s)	200, 239, 656, 999, 1131, 1201
AvaI	CYCGRG	2 cut(s)	231, 979
AvaII	GGWCC	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	396
BamHI	GGATCC	2 cut(s)	454, 983
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	238
Bbv12I	GWGCWC	2 cut(s)	238, 616
BbvI	GCAGC	3 cut(s)	95, 284, 431
BccI	CCATC	3 cut(s)	368, 879, 1102
BciT130I	CCWGG	3 cut(s)	272, 397, 846
BciVI	GTATCC	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	560
BcuI	ACTAGT	1 cut(s)	925
BfaI	CTAG	4 cut(s)	105, 549, 596, 926
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	3 cut(s)	109, 298, 445
BlsI	GCNGC	3 cut(s)	110, 299, 446
Bme1390I	CCNGG	4 cut(s)	272, 302, 397, 846
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	2 cut(s)	231, 979
BmgT120I	GGNCC	3 cut(s)	254, 433, 1037
BmiI	GGNNCC	3 cut(s)	393, 456, 985
BmrFI	CCNGG	4 cut(s)	272, 302, 397, 846
BmsI	GCATC	3 cut(s)	82, 351, 1244
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	4 cut(s)	584, 608, 809, 1169
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	250, 395, 844
BsaWI	WCCGGW	2 cut(s)	185, 1141
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 937, 967
Bsc4I	CCNNNNNNNGG	1 cut(s)	1247
Bse118I	RCCGGY	2 cut(s)	185, 1141
Bse21I	CCTNAGG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	3 cut(s)	272, 397, 846
BseDI	CCNNGG	3 cut(s)	250, 395, 844
BseGI	GGATG	1 cut(s)	1260
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	1247
BseMII	CTCAG	4 cut(s)	62, 516, 726, 1211
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	95, 284, 431
BshFI	GGCC	2 cut(s)	255, 1038
BshNI	GGYRCC	1 cut(s)	391
BshTI	ACCGGT	2 cut(s)	185, 1141
BsiHKAI	GWGCWC	2 cut(s)	238, 616
BsiHKCI	CYCGRG	2 cut(s)	231, 979
BsiSI	CCGG	3 cut(s)	186, 302, 1142
BslI	CCNNNNNNNGG	1 cut(s)	1247
BsmAI	GTCTC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	255, 1038
BsoBI	CYCGRG	2 cut(s)	231, 979
Bsp1286I	GDGCHC	3 cut(s)	238, 396, 616
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	6 cut(s)	22, 285, 310, 454, 688, 983
BspACI	CCGC	2 cut(s)	557, 677
BspANI	GGCC	2 cut(s)	255, 1038
BspCNI	CTCAG	4 cut(s)	61, 517, 727, 1212
BspHI	TCATGA	1 cut(s)	1155
BspLI	GGNNCC	3 cut(s)	393, 456, 985
BspPI	GGATC	4 cut(s)	449, 462, 978, 991
BspQI	GCTCTTC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	391
BsrFI	RCCGGY	2 cut(s)	185, 1141
BsrGI	TGTACA	1 cut(s)	705
BssAI	RCCGGY	2 cut(s)	185, 1141
BssECI	CCNNGG	3 cut(s)	250, 395, 844
BssMI	GATC	6 cut(s)	22, 285, 310, 454, 688, 983
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	3 cut(s)	272, 397, 846
Bst6I	CTCTTC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	5 cut(s)	48, 525, 735, 819, 1220
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	1260
BstKTI	GATC	6 cut(s)	25, 288, 313, 457, 691, 986
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	6 cut(s)	22, 285, 310, 454, 688, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
BstNI	CCWGG	3 cut(s)	272, 397, 846
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	4 cut(s)	270, 300, 395, 844
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	3 cut(s)	95, 284, 431
BstX2I	RGATCY	3 cut(s)	22, 454, 983
BstYI	RGATCY	3 cut(s)	22, 454, 983
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	255, 1038
BtsCI	GGATG	1 cut(s)	1260
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	557
CciI	TCATGA	1 cut(s)	1155
Cfr10I	RCCGGY	2 cut(s)	185, 1141
Cfr13I	GGNCC	3 cut(s)	254, 433, 1037
Csp6I	GTAC	2 cut(s)	279, 706
CspAI	ACCGGT	2 cut(s)	185, 1141
CviAII	CATG	4 cut(s)	709, 1103, 1156, 1165
CviQI	GTAC	2 cut(s)	279, 706
DdeI	CTNAG	5 cut(s)	48, 525, 735, 819, 1220
DpnI	GATC	6 cut(s)	24, 287, 312, 456, 690, 985
DpnII	GATC	6 cut(s)	22, 285, 310, 454, 688, 983
DraI	TTTAAA	3 cut(s)	472, 603, 963
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	2 cut(s)	231, 979
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	2 cut(s)	254, 1037
EcoO65I	GGTNACC	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	1112
EcoRII	CCWGG	3 cut(s)	270, 395, 844
EcoT14I	CCWWGG	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	4 cut(s)	712, 1106, 1159, 1168
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	4 cut(s)	708, 1102, 1155, 1164
FauI	CCCGC	1 cut(s)	564
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	109, 298, 445
FokI	GGATG	1 cut(s)	1247
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	3 cut(s)	109, 298, 445
FspBI	CTAG	4 cut(s)	105, 549, 596, 926
GluI	GCNGC	3 cut(s)	109, 298, 445
HaeIII	GGCC	2 cut(s)	255, 1038
HapII	CCGG	3 cut(s)	186, 302, 1142
Hin1II	CATG	4 cut(s)	712, 1106, 1159, 1168
HinfI	GANTC	3 cut(s)	148, 568, 1004
HpaII	CCGG	3 cut(s)	186, 302, 1142
HphI	GGTGA	6 cut(s)	200, 239, 656, 999, 1131, 1201
Hpy188I	TCNGA	2 cut(s)	51, 1045
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	635, 1028, 1050
HpyCH4IV	ACGT	2 cut(s)	74, 1195
HpyCH4V	TGCA	4 cut(s)	4, 292, 753, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
HpyF3I	CTNAG	5 cut(s)	48, 525, 735, 819, 1220
HpySE526I	ACGT	2 cut(s)	74, 1195
Hsp92II	CATG	4 cut(s)	712, 1106, 1159, 1168
Kzo9I	GATC	6 cut(s)	22, 285, 310, 454, 688, 983
LguI	GCTCTTC	1 cut(s)	485
LmnI	GCTCC	2 cut(s)	526, 619
Lsp1109I	GCAGC	3 cut(s)	95, 284, 431
LweI	GCATC	3 cut(s)	82, 351, 1244
MaeI	CTAG	4 cut(s)	105, 549, 596, 926
MaeII	ACGT	2 cut(s)	74, 1195
MaeIII	GTNAC	3 cut(s)	188, 1180, 1207
MalI	GATC	6 cut(s)	24, 287, 312, 456, 690, 985
MboI	GATC	6 cut(s)	22, 285, 310, 454, 688, 983
MboII	GAAGA	8 cut(s)	236, 383, 494, 502, 845, 920, 926, 1087
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	3 cut(s)	22, 454, 983
MhlI	GDGCHC	3 cut(s)	238, 396, 616
MlyI	GAGTC	2 cut(s)	142, 562
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	8 cut(s)	57, 471, 506, 520, 786, 997, 1144, 1183
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	8 cut(s)	219, 471, 602, 651, 962, 992, 1065, 1270
MspI	CCGG	3 cut(s)	186, 302, 1142
MspR9I	CCNGG	4 cut(s)	272, 302, 397, 846
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	3 cut(s)	272, 397, 846
MwoI	GCNNNNNNNGC	3 cut(s)	527, 783, 802
NciI	CCSGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	6 cut(s)	22, 285, 310, 454, 688, 983
NlaIII	CATG	4 cut(s)	712, 1106, 1159, 1168
NlaIV	GGNNCC	3 cut(s)	393, 456, 985
NmuCI	GTSAC	2 cut(s)	188, 1207
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	231
PagI	TCATGA	1 cut(s)	1155
PciSI	GCTCTTC	1 cut(s)	485
PctI	GAATGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	1004
PflFI	GACNNNGTC	1 cut(s)	571
PinAI	ACCGGT	2 cut(s)	185, 1141
PkrI	GCNGC	3 cut(s)	110, 299, 446
PleI	GAGTC	2 cut(s)	142, 562
PpsI	GAGTC	2 cut(s)	142, 562
Ppu21I	YACGTR	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	270, 395, 844
PspEI	GGTNACC	1 cut(s)	188
PspGI	CCWGG	3 cut(s)	270, 395, 844
PspN4I	GGNNCC	3 cut(s)	393, 456, 985
PspPI	GGNCC	3 cut(s)	254, 433, 1037
PspXI	VCTCGAGB	1 cut(s)	231
PsuI	RGATCY	3 cut(s)	22, 454, 983
PsyI	GACNNNGTC	1 cut(s)	571
RsaI	GTAC	2 cut(s)	280, 707
RsaNI	GTAC	2 cut(s)	279, 706
SacI	GAGCTC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	8 cut(s)	219, 471, 602, 651, 962, 992, 1065, 1270
SatI	GCNGC	3 cut(s)	109, 298, 445
Sau3AI	GATC	6 cut(s)	22, 285, 310, 454, 688, 983
Sau96I	GGNCC	3 cut(s)	254, 433, 1037
SchI	GAGTC	2 cut(s)	142, 562
ScrFI	CCNGG	4 cut(s)	272, 302, 397, 846
SduI	GDGCHC	3 cut(s)	238, 396, 616
SfaNI	GCATC	3 cut(s)	82, 351, 1244
SfcI	CTRYAG	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	231
SgrAI	CRCCGGYG	1 cut(s)	1141
SinI	GGWCC	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	5 cut(s)	231, 563, 623, 788, 1148
SmoI	CTYRAG	5 cut(s)	231, 563, 623, 788, 1148
SpeI	ACTAGT	1 cut(s)	925
SsiI	CCGC	2 cut(s)	557, 677
SspMI	CTAG	4 cut(s)	105, 549, 596, 926
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	4 cut(s)	270, 300, 395, 844
StyI	CCWWGG	1 cut(s)	250
TaiI	ACGT	2 cut(s)	77, 1198
TaqI	TCGA	3 cut(s)	162, 232, 284
TatI	WGTACW	2 cut(s)	278, 705
TfiI	GAWTC	1 cut(s)	1004
Tru1I	TTAA	8 cut(s)	219, 471, 602, 651, 962, 992, 1065, 1270
Tru9I	TTAA	8 cut(s)	219, 471, 602, 651, 962, 992, 1065, 1270
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	2 cut(s)	188, 1207
TseI	GCWGC	3 cut(s)	108, 297, 444
Tsp45I	GTSAC	2 cut(s)	188, 1207
TspDTI	ATGAA	7 cut(s)	316, 398, 494, 732, 929, 1105, 1249
TspGWI	ACGGA	2 cut(s)	471, 738
TspRI	CASTG	1 cut(s)	150
Tth111I	GACNNNGTC	1 cut(s)	571
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	2 cut(s)	1112, 1121
XhoI	CTCGAG	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	4 cut(s)	105, 549, 596, 926
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.