Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007383

Physical Location & Seq

Genomic Coordinates Reverse (-)

3742078 .. 3744604

Gene Structure 2527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1052800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGCGATTTTTCGGGTTGTGATTTGATAAGCAATTTGCCTCAGGCCATTATAGAGAGCATTCTCACGCGTCTGCCAATAAGAGATGCTGTAAGAACTAGCTGTTTATCAACGAAATGGAGATACAAATGGACTACCATCACTCATCTTTCATTCGACGAAAAATGTGTCACTCTATCAAATGACCGAGCTCTTGTTGAACAAAGCCTCATACGTTTCATTACTCAGGCACTCTTTCTTCACCAAGGACCCATTCACAAGTTCCAGCTTAGGACTTCATACTTGCAGAGCTGCCCGGATATAGATCAATGGATACTTTTCCTTTCGAGGAATGATGTCAAAGAACTGGTTCTTGAGTTGGGGGAAGGTGAGTGGTTTAGGGTGCCTTCGTGCCTTTTTTATTGTAAAAAATTGACCCGTTTGGAGCTATTTCGCTGCGAGTTGGATCCGCCTCCTGCTTTTAAAGGATTTTTGTGTTTGAAGGGCCTCAATCTTCATCAGGTTTTGGTTACTCCTGATGCAATTGAAAGTCTTATTTCCAGTTGCCCGCTACTTGAGAGTCTGGCTTTGTCATACTCTGATAGCTTAGCTCTAAACATCTGCGCTCCAAATCTCAGGTACTTGTGTCTTGAAGGCGAATTTAAGGATATCTGTCTTGAAAATACGCCGCTTTTGGTTGCCATATCTGTTGCCATGTATATGACTGACGACATTGCTGAGCACTTTGAACAAAGTTCAAATTGCAACTTTGTCAAGTTTCTTGGTGGCATTCCACTTCTTGAGAGGCTTGTTGGGCATATCTACTTTACAAAGTATTTGAGTATAGGTAATGACCTAGGAATTCTTCCGATTACTTACAACCGTTTAAAGATTATCGAATTATATCAAGTAAGTTTCGAAGATATGAAAGAGATACTAGTTGTTCTTCGCTTGATTACGAGCGCTCCCAACTTAAAGGAACTTCAAATCTCGGGATCTTCAAATACTTTAGCAGCAATAGAAGCGTCCGACTTGGATTTCTGGGAGAAACAATGCCCTTCCGACTGCACATTCCGAAGGCTCAAAGTTGTGAACATGACAGATATGTCCGGAGTGCCACACGAGATGGAATTCATGAAATTTCTGTTGAAGAAATCACCCGTGCTTGAGATGATGAGCGTTACGCCTAGCGCGTATGTTTTGGAAGGACAGTTGAATATGTTGATTGAGTTGGCGAGGTTTAAACGGGCATCTCCGGAAGCAGAAGTTATCTTCATCCAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

422

Amino Acids

47.92

Weight (kDa)

5.28

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 45	2.6e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	87 - 207	1.1e-06	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	101 - 323	8.1e-18	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	345 - 386	1.1e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13570 AT1G13570 AT1G13570
fragaria_vesca	FvH4_4g28670 FvH4_4g28670 FvH4_4g28670 FvH4_4g28670
malus_domestica	MD13G1052800.v1.1 MD16G1051800.v1.1
prunus_persica	Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1 Prupe.1G299200_v2.0.a1
pyrus_communis	pycom13g04730 pycom16g04550
rosa_chinensis	RchiOBHm_Chr4g0436781
rosa_laevigata	RLG00000006496
rosa_multiflora	Rmu_co8098618.1_g000001 Rmu_sc0001837.1_g000005
rosa_roxburghii	Rroxscaffold_5G00377850
rosa_rugosa	Rorug04G0296000
rosa_samantha	Rh4AG350500 Rh4BG359400 Rh4CG373700 Rh4DG353400
rosa_wichuraiana	Rw4G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1084
AccB1I	GGYRCC	1 cut(s)	382
AccII	CGCG	2 cut(s)	70, 1172
AccIII	TCCGGA	2 cut(s)	1088, 1234
AciI	CCGC	3 cut(s)	449, 548, 668
AclWI	GGATC	3 cut(s)	440, 453, 982
AcsI	RAATTY	4 cut(s)	638, 840, 1109, 1118
AfaI	GTAC	1 cut(s)	620
AfeI	AGCGCT	1 cut(s)	943
AflIII	ACRYGT	1 cut(s)	68
AhlI	ACTAGT	1 cut(s)	916
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	7 cut(s)	102, 191, 268, 291, 427, 585, 590
AluI	AGCT	7 cut(s)	102, 191, 268, 291, 427, 585, 590
Alw21I	GWGCWC	2 cut(s)	193, 723
AlwI	GGATC	3 cut(s)	440, 453, 982
Ama87I	CYCGRG	1 cut(s)	970
Aor13HI	TCCGGA	2 cut(s)	1088, 1234
Aor51HI	AGCGCT	1 cut(s)	943
AoxI	GGCC	2 cut(s)	45, 484
ApeKI	GCWGC	3 cut(s)	291, 435, 992
ApoI	RAATTY	4 cut(s)	638, 840, 1109, 1118
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
Asp700I	GAANNNNTTC	1 cut(s)	348
AspA2I	CCTAGG	1 cut(s)	835
AspLEI	GCGC	3 cut(s)	605, 944, 1172
AspS9I	GGNCC	2 cut(s)	248, 484
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	233, 380, 1128
AsuII	TTCGAA	1 cut(s)	897
AvaI	CYCGRG	1 cut(s)	970
AvaII	GGWCC	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	835
AxyI	CCTNAGG	1 cut(s)	42
BaeI	ACNNNNGTAYC	2 cut(s)	610, 643
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	193
BauI	CACGAG	1 cut(s)	1100
Bbv12I	GWGCWC	2 cut(s)	193, 723
BbvI	GCAGC	3 cut(s)	278, 422, 1004
BccI	CCATC	2 cut(s)	146, 1099
BciVI	GTATCC	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	296
BcuI	ACTAGT	1 cut(s)	916
BfaI	CTAG	4 cut(s)	99, 836, 917, 1167
BfoI	RGCGCY	1 cut(s)	945
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	4 cut(s)	292, 436, 668, 993
BlnI	CCTAGG	1 cut(s)	835
BlpI	GCTNAGC	2 cut(s)	586, 717
BlsI	GCNGC	4 cut(s)	293, 437, 669, 994
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	970
BmgT120I	GGNCC	2 cut(s)	248, 484
BmiI	GGNNCC	3 cut(s)	250, 384, 447
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	76, 508, 1238
Bpu10I	CCTNAGC	1 cut(s)	269
Bpu1102I	GCTNAGC	2 cut(s)	586, 717
Bpu14I	TTCGAA	1 cut(s)	897
BpuEI	CTTGAG	4 cut(s)	374, 575, 800, 1166
BpuMI	CCSGG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	244, 835
BsaWI	WCCGGW	2 cut(s)	1088, 1234
BsaXI	ACNNNNNCTCC	2 cut(s)	928, 958
Bse1I	ACTGG	2 cut(s)	351, 540
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	711
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	2 cut(s)	1088, 1234
BseDI	CCNNGG	2 cut(s)	244, 835
BseGI	GGATG	1 cut(s)	1254
BseJI	GATNNNNATC	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	4 cut(s)	56, 239, 628, 708
BseNI	ACTGG	2 cut(s)	351, 540
BseXI	GCAGC	3 cut(s)	278, 422, 1004
BsgI	GTGCAG	1 cut(s)	1030
Bsh1236I	CGCG	2 cut(s)	70, 1172
BshFI	GGCC	2 cut(s)	47, 486
BshNI	GGYRCC	1 cut(s)	382
BsiHKAI	GWGCWC	2 cut(s)	193, 723
BsiHKCI	CYCGRG	1 cut(s)	970
BsiSI	CCGG	3 cut(s)	296, 1089, 1235
BsmI	GAATGC	2 cut(s)	60, 768
BsnI	GGCC	2 cut(s)	47, 486
BsoBI	CYCGRG	1 cut(s)	970
Bsp119I	TTCGAA	1 cut(s)	897
Bsp1286I	GDGCHC	2 cut(s)	193, 723
Bsp13I	TCCGGA	2 cut(s)	1088, 1234
Bsp143I	GATC	3 cut(s)	304, 445, 974
Bsp1720I	GCTNAGC	2 cut(s)	586, 717
BspACI	CCGC	3 cut(s)	449, 548, 668
BspANI	GGCC	2 cut(s)	47, 486
BspCNI	CTCAG	4 cut(s)	55, 238, 627, 709
BspEI	TCCGGA	2 cut(s)	1088, 1234
BspFNI	CGCG	2 cut(s)	70, 1172
BspHI	TCATGA	1 cut(s)	1113
BspLI	GGNNCC	3 cut(s)	250, 384, 447
BspPI	GGATC	3 cut(s)	440, 453, 982
BspT104I	TTCGAA	1 cut(s)	897
BspT107I	GGYRCC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	351, 540
BssECI	CCNNGG	2 cut(s)	244, 835
BssMI	GATC	3 cut(s)	304, 445, 974
BssSI	CACGAG	1 cut(s)	1100
BssT1I	CCWWGG	2 cut(s)	244, 835
Bst2BI	CACGAG	1 cut(s)	1100
Bst4CI	ACNGT	2 cut(s)	863, 1191
BstBI	TTCGAA	1 cut(s)	897
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	6 cut(s)	42, 225, 269, 586, 614, 717
BstF5I	GGATG	1 cut(s)	1254
BstFNI	CGCG	2 cut(s)	70, 1172
BstH2I	RGCGCY	1 cut(s)	945
BstHHI	GCGC	3 cut(s)	605, 944, 1172
BstKTI	GATC	3 cut(s)	307, 448, 977
BstMBI	GATC	3 cut(s)	304, 445, 974
BstMWI	GCNNNNNNNGC	2 cut(s)	793, 1001
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	2 cut(s)	70, 1172
BstV1I	GCAGC	3 cut(s)	278, 422, 1004
BstX2I	RGATCY	2 cut(s)	445, 974
BstYI	RGATCY	2 cut(s)	445, 974
Bsu36I	CCTNAGG	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	47, 486
BtsCI	GGATG	1 cut(s)	1254
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	1113
CfoI	GCGC	3 cut(s)	605, 944, 1172
Cfr13I	GGNCC	2 cut(s)	248, 484
CseI	GACGC	2 cut(s)	59, 993
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	3 cut(s)	694, 1075, 1114
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	6 cut(s)	42, 225, 269, 586, 614, 717
DpnI	GATC	3 cut(s)	306, 447, 976
DpnII	GATC	3 cut(s)	304, 445, 974
DraI	TTTAAA	3 cut(s)	463, 867, 1222
DrdI	GACNNNNNNGTC	1 cut(s)	1084
DseDI	GACNNNNNNGTC	1 cut(s)	1084
EciI	GGCGGA	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	244, 835
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	248
Eco47III	AGCGCT	1 cut(s)	943
Eco53kI	GAGCTC	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	970
EcoICRI	GAGCTC	1 cut(s)	191
EcoO109I	RGGNCCY	2 cut(s)	248, 484
EcoRI	GAATTC	2 cut(s)	840, 1109
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	2 cut(s)	244, 835
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	244, 835
FaeI	CATG	3 cut(s)	697, 1078, 1117
FatI	CATG	3 cut(s)	693, 1074, 1113
FauI	CCCGC	1 cut(s)	555
Fnu4HI	GCNGC	4 cut(s)	292, 436, 668, 993
FokI	GGATG	1 cut(s)	1241
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	4 cut(s)	292, 436, 668, 993
FspBI	CTAG	4 cut(s)	99, 836, 917, 1167
GlaI	GCGC	3 cut(s)	604, 943, 1171
GluI	GCNGC	4 cut(s)	292, 436, 668, 993
HaeII	RGCGCY	1 cut(s)	945
HaeIII	GGCC	2 cut(s)	47, 486
HapII	CCGG	3 cut(s)	296, 1089, 1235
HgaI	GACGC	2 cut(s)	59, 993
HhaI	GCGC	3 cut(s)	605, 944, 1172
Hin1II	CATG	3 cut(s)	697, 1078, 1117
Hin6I	GCGC	3 cut(s)	603, 942, 1170
HinP1I	GCGC	3 cut(s)	603, 942, 1170
HinfI	GANTC	1 cut(s)	559
HpaII	CCGG	3 cut(s)	296, 1089, 1235
HphI	GGTGA	3 cut(s)	233, 380, 1128
Hpy166II	GTNNAC	1 cut(s)	1072
Hpy188I	TCNGA	5 cut(s)	580, 849, 1009, 1042, 1055
Hpy188III	TCNNGA	9 cut(s)	353, 515, 629, 656, 779, 972, 1089, 1114, 1235
Hpy8I	GTNNAC	1 cut(s)	1072
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	7 cut(s)	359, 396, 475, 626, 1047, 1050, 1178
HpyCH4III	ACNGT	2 cut(s)	863, 1191
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	286, 521, 744, 1047
HpyF10VI	GCNNNNNNNGC	2 cut(s)	793, 1001
HpyF3I	CTNAG	6 cut(s)	42, 225, 269, 586, 614, 717
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	3 cut(s)	697, 1078, 1117
HspAI	GCGC	3 cut(s)	603, 942, 1170
Kpn2I	TCCGGA	2 cut(s)	1088, 1234
Kzo9I	GATC	3 cut(s)	304, 445, 974
LmnI	GCTCC	3 cut(s)	424, 610, 949
Lsp1109I	GCAGC	3 cut(s)	278, 422, 1004
LweI	GCATC	3 cut(s)	76, 508, 1238
MaeI	CTAG	4 cut(s)	99, 836, 917, 1167
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	3 cut(s)	169, 508, 1159
MalI	GATC	3 cut(s)	306, 447, 976
MboI	GATC	3 cut(s)	304, 445, 974
MboII	GAAGA	8 cut(s)	230, 485, 836, 911, 917, 969, 1141, 1243
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	2 cut(s)	445, 974
MhlI	GDGCHC	2 cut(s)	193, 723
MluCI	AATT	9 cut(s)	34, 410, 522, 638, 739, 840, 878, 1109, 1118
MluI	ACGCGT	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	3 cut(s)	423, 1032, 1065
MnlI	CCTC	7 cut(s)	51, 218, 321, 462, 497, 777, 1209
MroI	TCCGGA	2 cut(s)	1088, 1234
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	5 cut(s)	462, 642, 866, 953, 1221
MslI	CAYNNNNRTG	1 cut(s)	698
MspI	CCGG	3 cut(s)	296, 1089, 1235
MspR9I	CCNGG	1 cut(s)	296
MssI	GTTTAAAC	1 cut(s)	1222
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	2 cut(s)	60, 768
MvnI	CGCG	2 cut(s)	70, 1172
MwoI	GCNNNNNNNGC	2 cut(s)	793, 1001
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	3 cut(s)	304, 445, 974
NlaIII	CATG	3 cut(s)	697, 1078, 1117
NlaIV	GGNNCC	3 cut(s)	250, 384, 447
NmuCI	GTSAC	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	897
PagI	TCATGA	1 cut(s)	1113
PcsI	WCGNNNNNNNCGW	1 cut(s)	1169
PctI	GAATGC	2 cut(s)	60, 768
PdmI	GAANNNNTTC	1 cut(s)	348
PkrI	GCNGC	4 cut(s)	293, 437, 669, 994
PleI	GAGTC	1 cut(s)	567
PmeI	GTTTAAAC	1 cut(s)	1222
PpsI	GAGTC	1 cut(s)	567
PpuMI	RGGWCCY	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	248
PspN4I	GGNNCC	3 cut(s)	250, 384, 447
PspPI	GGNCC	2 cut(s)	248, 484
PspPPI	RGGWCCY	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	445, 974
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	5 cut(s)	462, 642, 866, 953, 1221
SatI	GCNGC	4 cut(s)	292, 436, 668, 993
Sau3AI	GATC	3 cut(s)	304, 445, 974
Sau96I	GGNCC	2 cut(s)	248, 484
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	193, 723
SfaNI	GCATC	3 cut(s)	76, 508, 1238
SfuI	TTCGAA	1 cut(s)	897
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	4 cut(s)	353, 554, 779, 1145
SmoI	CTYRAG	4 cut(s)	353, 554, 779, 1145
SpeI	ACTAGT	1 cut(s)	916
Sse9I	AATT	9 cut(s)	34, 410, 522, 638, 739, 840, 878, 1109, 1118
SsiI	CCGC	3 cut(s)	449, 548, 668
SspMI	CTAG	4 cut(s)	99, 836, 917, 1167
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	244, 835
TaaI	ACNGT	2 cut(s)	863, 1191
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	4 cut(s)	156, 326, 876, 897
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	9 cut(s)	34, 410, 522, 638, 739, 840, 878, 1109, 1118
TauI	GCSGC	1 cut(s)	670
Tru1I	TTAA	5 cut(s)	462, 642, 866, 953, 1221
Tru9I	TTAA	5 cut(s)	462, 642, 866, 953, 1221
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	291, 435, 992
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	8 cut(s)	141, 208, 267, 485, 920, 1102, 1130, 1243
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	4 cut(s)	638, 840, 1109, 1118
XmaJI	CCTAGG	1 cut(s)	835
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	4 cut(s)	99, 836, 917, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.