AT3G26610

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015960
Physical Location & Seq
Forward (+)
9776958 .. 9780553
3596 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26610.1

Sequence Viewer

Length: 1413 bp
ATGAAGACAGTAAAGAGTTTACCTATTTTAGCTATGCTACTCGGTGTCATAATTGTAGCCGCCGCCATCTCCACCGTCTCCGTTGAGGGCCGTAAACATCACGTAAAGAAGATTAAACCCAAACACCGTCGTCATTCCAAAAACACTCCTACCGGCTCTCCGGCACCCGCACCTTACCCGTCCACCAACGAGGGCGTTTTCAACATTTTCTCCTATGGTGCCAAGGGTGATGGAGTCTCTGACGACTCAAAGGCATTGGTCGGAGCGTGGAAGGCAGCTTGTAAAGTGGTCGGAGGGAAAGTGGAGATTCCGGCAGGGACACAGTTTTTGGTGAAGGCAGTGACACTGCAAGGGCCGTGTAAGGAGGAGACGGTGGTTCAAATAGAAGGAATCTTAGTGGCTCCAGAGAAGATAGGGTCATGGCCTAATTCAAGCTTGTTTCAATGGCTTAACTTCAAATGGGTCAGTCATTTGACCATCCAAGGCTCAGGGACTCTTAACGGTCGTGGCTATAACTGGTGGAACTTAGACACTTATCAAACTCAGACGAGAAATAAGTATATCCCACCAATGAAACCAACGGCACTTCGGTTTTATTCAAGTAATAACGTCACGGTCCGTGATATAAGCATCGTGAACAGTCCATTATGTCATTTGAAGTTCGATGATTCGGATGGAGTCAAAGTCAACAACATTACGATCTCTTCGCCGGAGAATAGCCCTAACACCGACGGCATCCACCTCCAGAACACACGTAACGTCGAGATTCAACACTCCAACATCGCTTGTGGAGATGACTGTGTATCCATTCAAACCGGCTCCTCCAATGTACATATTCACCACATCAATTGTGGCCCTGGCCATGGCATTAGCATAGGTGGACTAGGGAAAGATAAGAGTGTGGCATGTGTTTCTGATATCATTGTAGAGGATATCTCTATACAAAACACTCTTGCTGGTGTTCGAATCAAGACTTGGCAGGGAGGATTAGGGGTCGTCAAGAACCTAACGTTTTCGAACATTCAAGTAAAGGACGTGAAGGTACCAATAGTAATCGACCAATATTACTGCGACAAGTCCAAGTGTAAGAATCAGACGCGTGCAGTGTCGATTTCCGGCGTTAAATACAACAACATTGTCGGTAGTTTCACGGTGCAACCGGTACGTATTGCATGCAGCAACAACGTGCCATGCATGGACGTGGATCTTATGGATATAAGGCTACGACCTTCTGGAGGAATCAGAGGGTTACAAACTCATCAGCAACAACAAGCTTTGTGTTGGAACTCATATGGCAAAACACAAGGGCCTTTGGTTCCTTCTAGCATTGGCTATTGCTTGAGGAAGAGTAATATTGGTGGTTATTATTCACAAAAAGTTTCTCGGTCCTATGACAAGATTTGCCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

470

Amino Acids

51.08

Weight (kDa)

9.36

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 99 - 410 1.2e-84 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26610
fragaria_vesca FvH4_4g26050
malus_domestica MD16G1097700.v1.1
prunus_persica Prupe.1G249200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0433511
rosa_laevigata RLG00000006749
rosa_multiflora Rmu_sc0000312.1_g000004
rosa_roxburghii Rroxscaffold_5G00375030
rosa_rugosa Rorug04G0269200
rosa_samantha Rh4AG323800 Rh4BG331800 Rh4CG347100 Rh4DG328300
rosa_wichuraiana Rw0G020120 Rw4G028060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1042
AccB1I GGYRCC 3 cut(s) 163, 218, 1042
AccII CGCG 1 cut(s) 1099
AciI CCGC 3 cut(s) 60, 63, 168
AclI AACGTT 1 cut(s) 1010
AclWI GGATC 1 cut(s) 1212
AcoI YGGCCR 1 cut(s) 859
AfaI GTAC 3 cut(s) 831, 1044, 1164
AfiI CCNNNNNNNGG 2 cut(s) 863, 1235
AflIII ACRYGT 2 cut(s) 752, 1097
AgeI ACCGGT 1 cut(s) 1159
AjiI CACGTC 2 cut(s) 1036, 1201
AjnI CCWGG 1 cut(s) 856
AjuI GAANNNNNNNTTGG 2 cut(s) 958, 990
AluBI AGCT 4 cut(s) 32, 278, 435, 1274
AluI AGCT 4 cut(s) 32, 278, 435, 1274
Alw26I GTCTC 3 cut(s) 82, 241, 362
AlwI GGATC 1 cut(s) 1212
AoxI GGCC 6 cut(s) 88, 353, 422, 853, 859, 1307
ApeKI GCWGC 2 cut(s) 275, 1176
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AsiGI ACCGGT 1 cut(s) 1159
Asp718I GGTACC 1 cut(s) 1042
AspS9I GGNCC 6 cut(s) 88, 353, 616, 854, 1307, 1386
AsuHPI GGTGA 3 cut(s) 239, 343, 830
AsuII TTCGAA 2 cut(s) 964, 1016
AvaII GGWCC 2 cut(s) 616, 1386
BalI TGGCCA 1 cut(s) 861
BanI GGYRCC 3 cut(s) 163, 218, 1042
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 287, 1188
BccI CCATC 4 cut(s) 74, 224, 485, 668
BceAI ACGGC 4 cut(s) 75, 340, 597, 748
BciT130I CCWGG 1 cut(s) 858
BciVI GTATCC 1 cut(s) 814
BcoDI GTCTC 3 cut(s) 82, 241, 362
BfaI CTAG 2 cut(s) 884, 1323
BfuI GTATCC 1 cut(s) 814
BisI GCNGC 4 cut(s) 60, 63, 276, 1177
BlsI GCNGC 4 cut(s) 61, 64, 277, 1178
Bme1390I CCNGG 1 cut(s) 858
Bme18I GGWCC 2 cut(s) 616, 1386
BmgBI CACGTC 2 cut(s) 1036, 1201
BmgT120I GGNCC 6 cut(s) 88, 353, 616, 854, 1307, 1386
BmiI GGNNCC 6 cut(s) 165, 220, 402, 820, 1044, 1317
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 2 cut(s) 639, 744
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 920, 952
BpmI CTGGAG 3 cut(s) 387, 728, 1254
Bpu10I CCTNAGC 1 cut(s) 487
Bpu14I TTCGAA 2 cut(s) 964, 1016
BpuEI CTTGAG 1 cut(s) 1360
BsaAI YACGTR 3 cut(s) 103, 755, 1166
BsaJI CCNNGG 4 cut(s) 222, 481, 856, 862
BsaWI WCCGGW 1 cut(s) 1159
BsaXI ACNNNNNCTCC 8 cut(s) 142, 172, 194, 224, 285, 315, 669, 699
Bsc4I CCNNNNNNNGG 2 cut(s) 863, 1235
Bse118I RCCGGY 3 cut(s) 152, 815, 1159
Bse1I ACTGG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 4 cut(s) 222, 481, 856, 862
BseGI GGATG 3 cut(s) 477, 679, 735
BseLI CCNNNNNNNGG 2 cut(s) 863, 1235
BseMII CTCAG 2 cut(s) 501, 557
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 380, 811
BseXI GCAGC 2 cut(s) 287, 1188
BsgI GTGCAG 1 cut(s) 1122
Bsh1236I CGCG 1 cut(s) 1099
Bsh1285I CGRYCG 1 cut(s) 505
BshFI GGCC 6 cut(s) 90, 355, 424, 855, 861, 1309
BshNI GGYRCC 3 cut(s) 163, 218, 1042
BshTI ACCGGT 1 cut(s) 1159
BsiEI CGRYCG 1 cut(s) 505
BsiSI CCGG 7 cut(s) 153, 161, 311, 710, 816, 1116, 1160
BslFI GGGAC 2 cut(s) 331, 505
BslI CCNNNNNNNGG 2 cut(s) 863, 1235
BsmAI GTCTC 3 cut(s) 82, 241, 362
BsmBI CGTCTC 2 cut(s) 82, 362
BsmFI GGGAC 2 cut(s) 331, 505
BsnI GGCC 6 cut(s) 90, 355, 424, 855, 861, 1309
Bsp119I TTCGAA 2 cut(s) 964, 1016
Bsp1407I TGTACA 1 cut(s) 829
Bsp143I GATC 2 cut(s) 699, 1204
Bsp19I CCATGG 1 cut(s) 862
BspACI CCGC 3 cut(s) 60, 63, 168
BspANI GGCC 6 cut(s) 90, 355, 424, 855, 861, 1309
BspCNI CTCAG 2 cut(s) 500, 556
BspFNI CGCG 1 cut(s) 1099
BspLI GGNNCC 6 cut(s) 165, 220, 402, 820, 1044, 1317
BspPI GGATC 1 cut(s) 1212
BspT104I TTCGAA 2 cut(s) 964, 1016
BspT107I GGYRCC 3 cut(s) 163, 218, 1042
BsrFI RCCGGY 3 cut(s) 152, 815, 1159
BsrGI TGTACA 1 cut(s) 829
BsrI ACTGG 1 cut(s) 521
BssAI RCCGGY 3 cut(s) 152, 815, 1159
BssECI CCNNGG 4 cut(s) 222, 481, 856, 862
BssMI GATC 2 cut(s) 699, 1204
BssT1I CCWWGG 3 cut(s) 222, 481, 862
Bst2UI CCWGG 1 cut(s) 858
Bst6I CTCTTC 2 cut(s) 709, 1340
BstAUI TGTACA 1 cut(s) 829
BstBAI YACGTR 3 cut(s) 103, 755, 1166
BstBI TTCGAA 2 cut(s) 964, 1016
BstC8I GCNNGC 2 cut(s) 1101, 1174
BstDEI CTNAG 4 cut(s) 394, 487, 526, 543
BstDSI CCRYGG 1 cut(s) 862
BstENI CCTNNNNNAGG 1 cut(s) 1233
BstF5I GGATG 3 cut(s) 477, 679, 735
BstFNI CGCG 1 cut(s) 1099
BstKTI GATC 2 cut(s) 702, 1207
BstMAI GTCTC 3 cut(s) 82, 241, 362
BstMBI GATC 2 cut(s) 699, 1204
BstMCI CGRYCG 1 cut(s) 505
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 858
BstNSI RCATGY 2 cut(s) 909, 1176
BstSCI CCNGG 1 cut(s) 856
BstSNI TACGTA 1 cut(s) 1166
BstUI CGCG 1 cut(s) 1099
BstV1I GCAGC 2 cut(s) 287, 1188
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 1204
BstYI RGATCY 1 cut(s) 1204
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 6 cut(s) 90, 355, 424, 855, 861, 1309
BtgI CCRYGG 1 cut(s) 862
BtgZI GCGATG 1 cut(s) 766
BtrI CACGTC 2 cut(s) 1036, 1201
BtsCI GGATG 3 cut(s) 477, 679, 735
BtsI GCAGTG 3 cut(s) 344, 345, 1110
BtsIMutI CAGTG 3 cut(s) 344, 345, 1110
Cac8I GCNNGC 2 cut(s) 1101, 1174
Cfr10I RCCGGY 3 cut(s) 152, 815, 1159
Cfr13I GGNCC 6 cut(s) 88, 353, 616, 854, 1307, 1386
CpoI CGGWCCG 1 cut(s) 616
CseI GACGC 1 cut(s) 1105
Csp6I GTAC 3 cut(s) 830, 1043, 1163
CspAI ACCGGT 1 cut(s) 1159
CspCI CAANNNNNGTGG 2 cut(s) 830, 865
CspI CGGWCCG 1 cut(s) 616
CviAII CATG 6 cut(s) 420, 863, 906, 1173, 1191, 1195
CviQI GTAC 3 cut(s) 830, 1043, 1163
DdeI CTNAG 4 cut(s) 394, 487, 526, 543
DpnI GATC 2 cut(s) 701, 1206
DpnII GATC 2 cut(s) 699, 1204
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 2 cut(s) 709, 1340
EarI CTCTTC 2 cut(s) 709, 1340
Eco105I TACGTA 1 cut(s) 1166
Eco130I CCWWGG 3 cut(s) 222, 481, 862
Eco32I GATATC 2 cut(s) 919, 934
Eco47I GGWCC 2 cut(s) 616, 1386
EcoNI CCTNNNNNAGG 1 cut(s) 1233
EcoO109I RGGNCCY 1 cut(s) 1307
EcoRII CCWGG 1 cut(s) 856
EcoRV GATATC 2 cut(s) 919, 934
EcoT14I CCWWGG 3 cut(s) 222, 481, 862
EcoT22I ATGCAT 1 cut(s) 1196
ErhI CCWWGG 3 cut(s) 222, 481, 862
Esp3I CGTCTC 2 cut(s) 82, 362
FaeI CATG 6 cut(s) 423, 866, 909, 1176, 1194, 1198
FaqI GGGAC 2 cut(s) 331, 505
FatI CATG 6 cut(s) 419, 862, 905, 1172, 1190, 1194
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 1291
Fnu4HI GCNGC 4 cut(s) 60, 63, 276, 1177
FokI GGATG 3 cut(s) 464, 686, 722
Fsp4HI GCNGC 4 cut(s) 60, 63, 276, 1177
FspBI CTAG 2 cut(s) 884, 1323
GluI GCNGC 4 cut(s) 60, 63, 276, 1177
GsuI CTGGAG 3 cut(s) 387, 728, 1254
HaeIII GGCC 6 cut(s) 90, 355, 424, 855, 861, 1309
HapII CCGG 7 cut(s) 153, 161, 311, 710, 816, 1116, 1160
HgaI GACGC 1 cut(s) 1105
Hin1II CATG 6 cut(s) 423, 866, 909, 1176, 1194, 1198
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 2 cut(s) 433, 1272
HpaII CCGG 7 cut(s) 153, 161, 311, 710, 816, 1116, 1160
HphI GGTGA 3 cut(s) 239, 343, 830
Hpy166II GTNNAC 6 cut(s) 20, 95, 183, 637, 688, 881
Hpy188I TCNGA 8 cut(s) 241, 263, 293, 546, 673, 916, 1095, 1244
Hpy188III TCNNGA 7 cut(s) 404, 634, 745, 763, 970, 1000, 1233
Hpy8I GTNNAC 6 cut(s) 20, 95, 183, 637, 688, 881
Hpy99I CGWCG 3 cut(s) 132, 734, 764
HpyAV CCTTC 6 cut(s) 265, 328, 380, 1033, 1239, 1329
HpyCH4IV ACGT 9 cut(s) 102, 609, 754, 759, 1010, 1035, 1165, 1185, 1200
HpyCH4V TGCA 6 cut(s) 349, 1103, 1156, 1172, 1176, 1194
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 4 cut(s) 394, 487, 526, 543
HpySE526I ACGT 9 cut(s) 102, 609, 754, 759, 1010, 1035, 1165, 1185, 1200
Hsp92II CATG 6 cut(s) 423, 866, 909, 1176, 1194, 1198
KpnI GGTACC 1 cut(s) 1046
Kzo9I GATC 2 cut(s) 699, 1204
LmnI GCTCC 3 cut(s) 263, 406, 824
Lsp1109I GCAGC 2 cut(s) 287, 1188
LweI GCATC 2 cut(s) 639, 744
MaeI CTAG 2 cut(s) 884, 1323
MaeII ACGT 9 cut(s) 102, 609, 754, 759, 1010, 1035, 1165, 1185, 1200
MaeIII GTNAC 4 cut(s) 340, 610, 755, 1248
MalI GATC 2 cut(s) 701, 1206
MboI GATC 2 cut(s) 699, 1204
MboII GAAGA 5 cut(s) 16, 121, 421, 696, 1357
MfeI CAATTG 1 cut(s) 847
MflI RGATCY 1 cut(s) 1204
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 3 cut(s) 51, 427, 847
MluI ACGCGT 1 cut(s) 1097
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 4 cut(s) 239, 243, 487, 687
MmeI TCCRAC 4 cut(s) 241, 271, 801, 1262
Mox20I TGGCCA 1 cut(s) 861
Mph1103I ATGCAT 1 cut(s) 1196
MscI TGGCCA 1 cut(s) 861
MseI TTAA 4 cut(s) 114, 450, 498, 1122
MslI CAYNNNNRTG 1 cut(s) 1199
Msp20I TGGCCA 1 cut(s) 861
MspI CCGG 7 cut(s) 153, 161, 311, 710, 816, 1116, 1160
MspR9I CCNGG 1 cut(s) 858
MunI CAATTG 1 cut(s) 847
MvaI CCWGG 1 cut(s) 858
MvnI CGCG 1 cut(s) 1099
MwoI GCNNNNNNNGC 1 cut(s) 272
NcoI CCATGG 1 cut(s) 862
NdeI CATATG 1 cut(s) 1291
NdeII GATC 2 cut(s) 699, 1204
NlaIII CATG 6 cut(s) 423, 866, 909, 1176, 1194, 1198
NlaIV GGNNCC 6 cut(s) 165, 220, 402, 820, 1044, 1317
NmuCI GTSAC 2 cut(s) 340, 610
NsiI ATGCAT 1 cut(s) 1196
NspI RCATGY 2 cut(s) 909, 1176
NspV TTCGAA 2 cut(s) 964, 1016
PaeI GCATGC 1 cut(s) 1176
PfeI GAWTC 7 cut(s) 307, 390, 668, 766, 966, 1090, 1239
PinAI ACCGGT 1 cut(s) 1159
PkrI GCNGC 4 cut(s) 61, 64, 277, 1178
PleI GAGTC 4 cut(s) 239, 242, 487, 686
PpsI GAGTC 4 cut(s) 239, 242, 487, 686
Ppu21I YACGTR 3 cut(s) 103, 755, 1166
Psp1406I AACGTT 1 cut(s) 1010
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 6 cut(s) 165, 220, 402, 820, 1044, 1317
PspPI GGNCC 6 cut(s) 88, 353, 616, 854, 1307, 1386
PsuI RGATCY 1 cut(s) 1204
RsaI GTAC 3 cut(s) 831, 1044, 1164
RsaNI GTAC 3 cut(s) 830, 1043, 1163
RseI CAYNNNNRTG 1 cut(s) 1199
Rsr2I CGGWCCG 1 cut(s) 616
RsrII CGGWCCG 1 cut(s) 616
SaqAI TTAA 4 cut(s) 114, 450, 498, 1122
SatI GCNGC 4 cut(s) 60, 63, 276, 1177
Sau3AI GATC 2 cut(s) 699, 1204
Sau96I GGNCC 6 cut(s) 88, 353, 616, 854, 1307, 1386
SchI GAGTC 4 cut(s) 239, 243, 487, 687
ScrFI CCNGG 1 cut(s) 858
SfaNI GCATC 2 cut(s) 639, 744
SfuI TTCGAA 2 cut(s) 964, 1016
SinI GGWCC 2 cut(s) 616, 1386
SmiMI CAYNNNNRTG 1 cut(s) 1199
SmlI CTYRAG 1 cut(s) 1339
SmoI CTYRAG 1 cut(s) 1339
SnaBI TACGTA 1 cut(s) 1166
SphI GCATGC 1 cut(s) 1176
Sse9I AATT 3 cut(s) 51, 427, 847
SsiI CCGC 3 cut(s) 60, 63, 168
SspI AATATT 2 cut(s) 1064, 1354
SspMI CTAG 2 cut(s) 884, 1323
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 3 cut(s) 222, 481, 862
TaiI ACGT 9 cut(s) 105, 612, 757, 762, 1013, 1038, 1168, 1188, 1203
TaqI TCGA 6 cut(s) 663, 762, 964, 1016, 1056, 1109
TaqII GACCGA 1 cut(s) 1374
TasI AATT 3 cut(s) 51, 427, 847
TatI WGTACW 1 cut(s) 829
TauI GCSGC 2 cut(s) 62, 65
TfiI GAWTC 7 cut(s) 307, 390, 668, 766, 966, 1090, 1239
Tru1I TTAA 4 cut(s) 114, 450, 498, 1122
Tru9I TTAA 4 cut(s) 114, 450, 498, 1122
TscAI CASTG 3 cut(s) 345, 351, 1110
TseFI GTSAC 2 cut(s) 340, 610
TseI GCWGC 2 cut(s) 275, 1176
Tsp45I GTSAC 2 cut(s) 340, 610
TspDTI ATGAA 3 cut(s) 17, 587, 1398
TspGWI ACGGA 2 cut(s) 70, 608
TspRI CASTG 3 cut(s) 345, 351, 1110
VpaK11BI GGWCC 2 cut(s) 616, 1386
XagI CCTNNNNNAGG 1 cut(s) 1233
XceI RCATGY 2 cut(s) 909, 1176
XcmI CCANNNNNNNNNTGG 1 cut(s) 848
XspI CTAG 2 cut(s) 884, 1323
Zsp2I ATGCAT 1 cut(s) 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.