Prupe.1G249200_v2.0.a1

Polygalacturonase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
26161298 .. 26164067
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G249200.1

Sequence Viewer

Length: 1413 bp
ATGAAGAGGAGCAAAAATTTATCTTCTCTACTTTTCTTGTTTTTGATTGCCTTTCTAACATTTCTAATAACTTCAGTTGAGGCAAGAAAAAATCATACCAAGAAGAGCAAACCACATAAACATCATCAAGGAAAGGGTGCCACCAGTGGCAATAGAACTCATAATTCACATTTGCCCGGCCCTGCTCCAGCCCCTCCTCAACCCCAACAGTCTACCATTTTCCCCGTCTTGTCATTTGGTGCCAAGGGTGATGGAGTCTCCGATGATTCGAAGGCACTTGTAGCAGCATGGGAAGCTGCCTGCAGGGTTAAAGGGGCAACTGTGGAAATCCCTTCAGGATTCAAGTTCCTCATCCAGCCTATAACTCTTGATGGCAGCGGTTGTATGCCTGACCTTGTTCTTCAGATAGATGGAACTCTCTTGGCTCCTTCAAAAGCAAGTACCTGGCCAGAATCCAGTTTGTTCCAATGGATAAACTTCAAATACGCTCGTAACTTCACCATCCAGGGCACTGGCATTGTTGATGGCCAGGGCTCTGACTGGTGGAATTCATCTGCGCACAAGAGGTCCAAGCACACTCCGGATACGAAACCCACTGCTTTGAGATTCTATTTTAGCTCAGATGTCACAGTTCGAAACATCAAAATCATAAACAGCCCTCAGTGCCACTTAAAATTTGACAACTCTTCGTGGATCAAAGTGAACAACATTACCATCACTTCACCAGATTATAGCCCAAATACAGACGGCATTCACTTGCAGAACACACAAAACGTGGAAATTCACCATTCTACTATTGGCTGTGGAGATGACTGTGTATCCATACAAACAGGATGCTCTAACGTTCATATTCATCATGTTAAATGTGGCCCTGGCCATGGCATAAGTCTAGGAGGACTCGGAAAAGCCGGAAGTGTAGCTTGTGTCTCAAACATCATCGTGAACAACATTTTATTTCAGAATACTCAATCAGGAGTTAGGATCAAGACTTGGCCGGGAGGAAAGGGGTCCGTGAAGAATGTATCATTCTCCAACATCCAGGTTTCCAATGTGGGCGTTCCTATAGTGATAGACCAAAACTATTGTGACAACATGAAGAAGCATTTGTGCCAGAACCAAATTAGAGGAGCTGTGGCAATCTCAGGTGTTAAATTCGATAATATAATTGGGAATTATTCAAAGGAGCCAATTCGTCTAGCTTGTAGCAATGACACTCCATGCACAGATGTGGATCTTATTGATATCCGGCTTAAACCCACAACCGGGGACCCGAGATCACTTCGATCCGATTTGTGTCGAAACTCTTATGGGAAGTCAAAAGCTCCCTTGCTTCCTTCAGTCATAGACTACTGCTTGAGAAGGGATGGGGGTCAAGTCAAGCATATAGCAAGGTCGCATGAGAAGATGTGTTAG

Protein Analysis

471

Amino Acids

51.15

Weight (kDa)

9.35

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26610
fragaria_vesca FvH4_4g26050
malus_domestica MD16G1097700.v1.1
prunus_persica Prupe.1G249200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0433511
rosa_laevigata RLG00000006749
rosa_multiflora Rmu_sc0000312.1_g000004
rosa_roxburghii Rroxscaffold_5G00375030
rosa_rugosa Rorug04G0269200
rosa_samantha Rh4AG323800 Rh4BG331800 Rh4CG347100 Rh4DG328300
rosa_wichuraiana Rw0G020120 Rw4G028060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 558
AccB1I GGYRCC 2 cut(s) 137, 239
AccI GTMKAC 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 1 cut(s) 378
AclI AACGTT 1 cut(s) 843
AclWI GGATC 4 cut(s) 701, 989, 1239, 1278
AcoI YGGCCR 4 cut(s) 446, 526, 874, 992
AcsI RAATTY 5 cut(s) 16, 547, 674, 780, 1151
AcuI CTGAAG 4 cut(s) 57, 318, 386, 1320
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 3 cut(s) 878, 1262, 1263
AgsI TTSAA 4 cut(s) 343, 432, 481, 1179
AjnI CCWGG 5 cut(s) 443, 504, 528, 871, 1038
AleI CACNNNNGTG 1 cut(s) 1226
AluBI AGCT 6 cut(s) 296, 618, 920, 1130, 1199, 1322
AluI AGCT 6 cut(s) 296, 618, 920, 1130, 1199, 1322
Alw26I GTCTC 2 cut(s) 262, 931
AlwI GGATC 4 cut(s) 701, 989, 1239, 1278
Ama87I CYCGRG 1 cut(s) 1270
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 6 cut(s) 178, 446, 526, 868, 874, 992
ApeKI GCWGC 3 cut(s) 284, 296, 375
ApoI RAATTY 5 cut(s) 16, 547, 674, 780, 1151
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 5 cut(s) 179, 567, 869, 1008, 1267
AsuC2I CCSGG 3 cut(s) 177, 996, 1264
AsuHPI GGTGA 4 cut(s) 260, 490, 714, 776
AsuII TTCGAA 2 cut(s) 269, 634
AvaI CYCGRG 1 cut(s) 1270
AvaII GGWCC 3 cut(s) 567, 1008, 1267
BaeGI GKGCMC 1 cut(s) 512
BalI TGGCCA 3 cut(s) 448, 528, 876
BanI GGYRCC 2 cut(s) 137, 239
BanII GRGCYC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 283, 296, 387
BccI CCATC 7 cut(s) 245, 365, 404, 509, 518, 722, 1358
BceAI ACGGC 1 cut(s) 763
BciT130I CCWGG 5 cut(s) 445, 506, 530, 873, 1040
BciVI GTATCC 2 cut(s) 577, 829
BcnI CCSGG 3 cut(s) 177, 996, 1264
BcoDI GTCTC 2 cut(s) 262, 931
BfaI CTAG 2 cut(s) 890, 1196
BfmI CTRYAG 2 cut(s) 301, 1062
BfuI GTATCC 2 cut(s) 577, 829
BisI GCNGC 3 cut(s) 285, 297, 376
BlsI GCNGC 3 cut(s) 286, 298, 377
Bme1390I CCNGG 8 cut(s) 177, 445, 506, 530, 873, 996, 1040, 1264
Bme18I GGWCC 3 cut(s) 567, 1008, 1267
BmeT110I CYCGRG 1 cut(s) 1270
BmgT120I GGNCC 5 cut(s) 179, 567, 869, 1008, 1267
BmiI GGNNCC 7 cut(s) 139, 241, 426, 1009, 1185, 1268, 1269
BmrFI CCNGG 8 cut(s) 177, 445, 506, 530, 873, 996, 1040, 1264
BmsI GCATC 1 cut(s) 824
BpmI CTGGAG 1 cut(s) 171
Bpu14I TTCGAA 2 cut(s) 269, 634
BpuEI CTTGAG 1 cut(s) 1375
BpuMI CCSGG 3 cut(s) 177, 996, 1264
BsaBI GATNNNNATC 1 cut(s) 1230
BsaJI CCNNGG 6 cut(s) 243, 505, 529, 871, 877, 1263
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 3 cut(s) 878, 1262, 1263
Bse1I ACTGG 4 cut(s) 144, 456, 517, 545
Bse3DI GCAATG 1 cut(s) 1213
Bse8I GATNNNNATC 1 cut(s) 1230
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 5 cut(s) 445, 506, 530, 873, 1040
BseDI CCNNGG 6 cut(s) 243, 505, 529, 871, 877, 1263
BseGI GGATG 5 cut(s) 351, 501, 839, 1035, 1369
BseJI GATNNNNATC 1 cut(s) 1230
BseLI CCNNNNNNNGG 3 cut(s) 878, 1262, 1263
BseMI GCAATG 1 cut(s) 1213
BseMII CTCAG 3 cut(s) 633, 674, 1155
BseNI ACTGG 4 cut(s) 144, 456, 517, 545
BseRI GAGGAG 3 cut(s) 22, 186, 1140
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 3 cut(s) 283, 296, 387
BshFI GGCC 6 cut(s) 180, 448, 528, 870, 876, 994
BshNI GGYRCC 2 cut(s) 137, 239
BsiHKCI CYCGRG 1 cut(s) 1270
BsiSI CCGG 6 cut(s) 177, 581, 909, 995, 1246, 1263
BslFI GGGAC 1 cut(s) 1280
BslI CCNNNNNNNGG 3 cut(s) 878, 1262, 1263
BsmAI GTCTC 2 cut(s) 262, 931
BsmFI GGGAC 1 cut(s) 1280
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 6 cut(s) 180, 448, 528, 870, 876, 994
BsoBI CYCGRG 1 cut(s) 1270
Bsp119I TTCGAA 2 cut(s) 269, 634
Bsp1286I GDGCHC 2 cut(s) 512, 536
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 5 cut(s) 693, 981, 1231, 1274, 1283
Bsp19I CCATGG 1 cut(s) 877
BspACI CCGC 1 cut(s) 378
BspANI GGCC 6 cut(s) 180, 448, 528, 870, 876, 994
BspCNI CTCAG 3 cut(s) 632, 673, 1154
BspEI TCCGGA 1 cut(s) 580
BspLI GGNNCC 7 cut(s) 139, 241, 426, 1009, 1185, 1268, 1269
BspMAI CTGCAG 1 cut(s) 305
BspPI GGATC 4 cut(s) 701, 989, 1239, 1278
BspQI GCTCTTC 1 cut(s) 98
BspT104I TTCGAA 2 cut(s) 269, 634
BspT107I GGYRCC 2 cut(s) 137, 239
BsrDI GCAATG 1 cut(s) 1213
BsrI ACTGG 4 cut(s) 144, 456, 517, 545
BssECI CCNNGG 6 cut(s) 243, 505, 529, 871, 877, 1263
BssMI GATC 5 cut(s) 693, 981, 1231, 1274, 1283
BssT1I CCWWGG 2 cut(s) 243, 877
Bst2UI CCWGG 5 cut(s) 445, 506, 530, 873, 1040
Bst4CI ACNGT 4 cut(s) 210, 322, 631, 815
Bst6I CTCTTC 2 cut(s) 98, 691
BstBI TTCGAA 2 cut(s) 269, 634
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 619, 660, 1141
BstDSI CCRYGG 1 cut(s) 877
BstF5I GGATG 5 cut(s) 351, 501, 839, 1035, 1369
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 5 cut(s) 696, 984, 1234, 1277, 1286
BstMAI GTCTC 2 cut(s) 262, 931
BstMBI GATC 5 cut(s) 693, 981, 1231, 1274, 1283
BstMWI GCNNNNNNNGC 3 cut(s) 281, 293, 663
BstNI CCWGG 5 cut(s) 445, 506, 530, 873, 1040
BstSCI CCNGG 8 cut(s) 175, 443, 504, 528, 871, 994, 1038, 1262
BstSFI CTRYAG 2 cut(s) 301, 1062
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 283, 296, 387
BstX2I RGATCY 1 cut(s) 1231
BstXI CCANNNNNNTGG 1 cut(s) 512
BstYI RGATCY 1 cut(s) 1231
BsuI GTATCC 2 cut(s) 577, 829
BsuRI GGCC 6 cut(s) 180, 448, 528, 870, 876, 994
BtgI CCRYGG 1 cut(s) 877
BtsCI GGATG 5 cut(s) 351, 501, 839, 1035, 1369
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 4 cut(s) 151, 510, 594, 668
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 559
Cfr13I GGNCC 5 cut(s) 179, 567, 869, 1008, 1267
Csp6I GTAC 1 cut(s) 441
CviAII CATG 6 cut(s) 288, 857, 878, 1093, 1218, 1397
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 3 cut(s) 619, 660, 1141
DpnI GATC 5 cut(s) 695, 983, 1233, 1276, 1285
DpnII GATC 5 cut(s) 693, 981, 1231, 1274, 1283
EaeI YGGCCR 4 cut(s) 446, 526, 874, 992
Eam1104I CTCTTC 2 cut(s) 98, 691
EarI CTCTTC 2 cut(s) 98, 691
Eco130I CCWWGG 2 cut(s) 243, 877
Eco24I GRGCYC 1 cut(s) 536
Eco32I GATATC 1 cut(s) 1243
Eco47I GGWCC 3 cut(s) 567, 1008, 1267
Eco57I CTGAAG 4 cut(s) 57, 318, 386, 1320
Eco88I CYCGRG 1 cut(s) 1270
EcoO109I RGGNCCY 1 cut(s) 1267
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 5 cut(s) 443, 504, 528, 871, 1038
EcoRV GATATC 1 cut(s) 1243
EcoT14I CCWWGG 2 cut(s) 243, 877
EcoT38I GRGCYC 1 cut(s) 536
ErhI CCWWGG 2 cut(s) 243, 877
FaeI CATG 6 cut(s) 291, 860, 881, 1096, 1221, 1400
FalI AAGNNNNNCTT 2 cut(s) 904, 936
FaqI GGGAC 1 cut(s) 1280
FatI CATG 6 cut(s) 287, 856, 877, 1092, 1217, 1396
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 3 cut(s) 285, 297, 376
FokI GGATG 5 cut(s) 338, 488, 846, 1022, 1376
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 3 cut(s) 285, 297, 376
FspBI CTAG 2 cut(s) 890, 1196
FspI TGCGCA 1 cut(s) 558
GlaI GCGC 1 cut(s) 558
GluI GCNGC 3 cut(s) 285, 297, 376
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 6 cut(s) 180, 448, 528, 870, 876, 994
HapII CCGG 6 cut(s) 177, 581, 909, 995, 1246, 1263
HhaI GCGC 1 cut(s) 559
Hin1II CATG 6 cut(s) 291, 860, 881, 1096, 1221, 1400
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HinfI GANTC 6 cut(s) 255, 266, 339, 452, 606, 897
HpaII CCGG 6 cut(s) 177, 581, 909, 995, 1246, 1263
HphI GGTGA 4 cut(s) 260, 490, 714, 776
Hpy166II GTNNAC 3 cut(s) 213, 703, 943
Hpy188I TCNGA 7 cut(s) 262, 405, 538, 622, 902, 960, 1288
Hpy188III TCNNGA 6 cut(s) 336, 368, 581, 940, 972, 985
Hpy8I GTNNAC 3 cut(s) 213, 703, 943
HpyAV CCTTC 5 cut(s) 265, 342, 438, 1344, 1353
HpyCH4III ACNGT 4 cut(s) 210, 322, 631, 815
HpyCH4IV ACGT 2 cut(s) 774, 843
HpyCH4V TGCA 3 cut(s) 303, 760, 1221
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 293, 663
HpyF3I CTNAG 3 cut(s) 619, 660, 1141
HpySE526I ACGT 2 cut(s) 774, 843
Hsp92II CATG 6 cut(s) 291, 860, 881, 1096, 1221, 1400
HspAI GCGC 1 cut(s) 557
KflI GGGWCCC 1 cut(s) 1267
Kpn2I TCCGGA 1 cut(s) 580
Kzo9I GATC 5 cut(s) 693, 981, 1231, 1274, 1283
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 6 cut(s) 9, 190, 430, 1127, 1183, 1327
Lsp1109I GCAGC 3 cut(s) 283, 296, 387
LweI GCATC 1 cut(s) 824
MaeI CTAG 2 cut(s) 890, 1196
MaeII ACGT 2 cut(s) 774, 843
MaeIII GTNAC 3 cut(s) 491, 625, 1085
MalI GATC 5 cut(s) 695, 983, 1233, 1276, 1285
MboI GATC 5 cut(s) 693, 981, 1231, 1274, 1283
MboII GAAGA 7 cut(s) 15, 16, 115, 392, 678, 1027, 1108
MflI RGATCY 1 cut(s) 1231
MhlI GDGCHC 2 cut(s) 512, 536
MlsI TGGCCA 3 cut(s) 448, 528, 876
MluNI TGGCCA 3 cut(s) 448, 528, 876
MlyI GAGTC 2 cut(s) 264, 891
MmeI TCCRAC 1 cut(s) 1056
MnlI CCTC 9 cut(s) 73, 204, 207, 359, 558, 669, 887, 992, 1118
Mox20I TGGCCA 3 cut(s) 448, 528, 876
MroI TCCGGA 1 cut(s) 580
MscI TGGCCA 3 cut(s) 448, 528, 876
MseI TTAA 5 cut(s) 309, 671, 861, 1149, 1251
MslI CAYNNNNRTG 2 cut(s) 938, 1226
Msp20I TGGCCA 3 cut(s) 448, 528, 876
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 6 cut(s) 177, 581, 909, 995, 1246, 1263
MspR9I CCNGG 8 cut(s) 177, 445, 506, 530, 873, 996, 1040, 1264
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 5 cut(s) 445, 506, 530, 873, 1040
MwoI GCNNNNNNNGC 3 cut(s) 281, 293, 663
NciI CCSGG 3 cut(s) 177, 996, 1264
NcoI CCATGG 1 cut(s) 877
NdeII GATC 5 cut(s) 693, 981, 1231, 1274, 1283
NlaIII CATG 6 cut(s) 291, 860, 881, 1096, 1221, 1400
NlaIV GGNNCC 7 cut(s) 139, 241, 426, 1009, 1185, 1268, 1269
NmuCI GTSAC 2 cut(s) 625, 1085
NsbI TGCGCA 1 cut(s) 558
NspV TTCGAA 2 cut(s) 269, 634
OliI CACNNNNGTG 1 cut(s) 1226
PciSI GCTCTTC 1 cut(s) 98
PctI GAATGC 1 cut(s) 750
PfeI GAWTC 4 cut(s) 266, 339, 452, 606
PkrI GCNGC 3 cut(s) 286, 298, 377
PleI GAGTC 2 cut(s) 263, 891
PpsI GAGTC 2 cut(s) 263, 891
PpuMI RGGWCCY 1 cut(s) 1267
Psp1406I AACGTT 1 cut(s) 843
Psp5II RGGWCCY 1 cut(s) 1267
Psp6I CCWGG 5 cut(s) 443, 504, 528, 871, 1038
PspGI CCWGG 5 cut(s) 443, 504, 528, 871, 1038
PspN4I GGNNCC 7 cut(s) 139, 241, 426, 1009, 1185, 1268, 1269
PspPI GGNCC 5 cut(s) 179, 567, 869, 1008, 1267
PspPPI RGGWCCY 1 cut(s) 1267
PstI CTGCAG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 1231
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 2 cut(s) 938, 1226
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 5 cut(s) 309, 671, 861, 1149, 1251
SatI GCNGC 3 cut(s) 285, 297, 376
Sau3AI GATC 5 cut(s) 693, 981, 1231, 1274, 1283
Sau96I GGNCC 5 cut(s) 179, 567, 869, 1008, 1267
SbfI CCTGCAGG 1 cut(s) 305
SchI GAGTC 2 cut(s) 264, 891
ScrFI CCNGG 8 cut(s) 177, 445, 506, 530, 873, 996, 1040, 1264
SdaI CCTGCAGG 1 cut(s) 305
SduI GDGCHC 2 cut(s) 512, 536
SfaNI GCATC 1 cut(s) 824
SfcI CTRYAG 2 cut(s) 301, 1062
SfuI TTCGAA 2 cut(s) 269, 634
SinI GGWCC 3 cut(s) 567, 1008, 1267
SmiMI CAYNNNNRTG 2 cut(s) 938, 1226
SmlI CTYRAG 1 cut(s) 1354
SmoI CTYRAG 1 cut(s) 1354
Sse8387I CCTGCAGG 1 cut(s) 305
SsiI CCGC 1 cut(s) 378
SspMI CTAG 2 cut(s) 890, 1196
StyD4I CCNGG 8 cut(s) 175, 443, 504, 528, 871, 994, 1038, 1262
StyI CCWWGG 2 cut(s) 243, 877
TaaI ACNGT 4 cut(s) 210, 322, 631, 815
TaiI ACGT 2 cut(s) 777, 846
TaqI TCGA 5 cut(s) 269, 634, 1155, 1282, 1297
TfiI GAWTC 4 cut(s) 266, 339, 452, 606
Tru1I TTAA 5 cut(s) 309, 671, 861, 1149, 1251
Tru9I TTAA 5 cut(s) 309, 671, 861, 1149, 1251
TscAI CASTG 4 cut(s) 151, 517, 601, 668
TseFI GTSAC 2 cut(s) 625, 1085
TseI GCWGC 3 cut(s) 284, 296, 375
Tsp45I GTSAC 2 cut(s) 625, 1085
TspDTI ATGAA 5 cut(s) 17, 540, 836, 842, 1109
TspGWI ACGGA 1 cut(s) 1000
TspRI CASTG 4 cut(s) 151, 517, 601, 668
VpaK11BI GGWCC 3 cut(s) 567, 1008, 1267
XapI RAATTY 5 cut(s) 16, 547, 674, 780, 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 794
XmiI GTMKAC 1 cut(s) 212
XspI CTAG 2 cut(s) 890, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.