Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000312.1

Orthogroup ID

OG0015960

Physical Location & Seq

Genomic Coordinates Reverse (-)

13252 .. 15554

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000312.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atgacttcatccactctactactgtttttctggattgttcttgtcacattttccataacttcggttgaggcaagaaagcaccaaaccaagaagagcaaaccccaaaaacatcaaaaaggtggtaataacactcatgattcacatttgcctcgtcctgctccaactccagttcctcagtatggttccttttctgtcttgtcctttggagccaagggtgatggtgtctccgacgattctaaggcgctcatagcggcatggaaagctgcctgcaaagtgaatggggctagtgtagaaatcccttcaggattcaagttcctcatcaagccaataactcttcaaggcccttgtatgcctgacgttgttcttcagatagatggaactctgatggctcctccaaaagttagctcatggtcaaagtccagtttgtttcagtggataaacttcaaatgcgttcataacttcaccatccagggcaccggagttatcgatggccagggctctgactggtggactagtagttcctcttcctcttcaatctataattacttgcagaagaagtccaacaagcatatgccgaatttcaaacccactgctttgagattctattcaagctatgatgtgacagtacgagatatcataatcataaacagccctcagtgccatttgaaatttgacagctctggagggatcatagttgacaacattaccatatcttcaccagagaatagtccaaatactgatggaattcacttgcagaacacccaaaacgtcgaaattcatcattctactattggttgtggagatgactgtgtatccatacaaactggctgctccaatgttcatgttcatcatatcaattgtggccctggccatggcataagtctaggaggacttggaaaagacagaagtgttgcttgtgtctcaaatataattgtcaatgacattacatttcaaaacactctatctggagttaggatcaaaacatggcagggaggcattgggtctgtgaagaatgtatctttttccaatatccaagtttcgaatgtgaagattccgataatgatagaccagtactactgtgacaagaagtcctgcaagaaccaaacaggagctgtagcaatctcaggtgtgaaatatgaccaaataattgggacttattcggtgcagcctgttcatcttgcttgcagcagcgacattccatgcaaagatgttgatctcattgatattcagctcaagccctcagcagggtaccagagatttcaacacgctttgtgttggaactcttatggcaagtcacaagctcctttggtcccttcaagcatagactactgcttgagaagagatgaaaatccagtcgagagaatagcaaagtcacaggatcgtcagcatctgtgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

465

Amino Acids

50.8

Weight (kDa)

8.82

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26610
fragaria_vesca	FvH4_4g26050
malus_domestica	MD16G1097700.v1.1
prunus_persica	Prupe.1G249200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0433511
rosa_laevigata	RLG00000006749
rosa_multiflora	Rmu_sc0000312.1_g000004
rosa_roxburghii	Rroxscaffold_5G00375030
rosa_rugosa	Rorug04G0269200
rosa_samantha	Rh4AG323800 Rh4BG331800 Rh4CG347100 Rh4DG328300
rosa_wichuraiana	Rw0G020120 Rw4G028060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1248
AccB1I	GGYRCC	2 cut(s)	473, 1248
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	3 cut(s)	695, 983, 1386
AcoI	YGGCCR	2 cut(s)	490, 868
AcsI	RAATTY	4 cut(s)	577, 668, 744, 774
AcuI	CTGAAG	2 cut(s)	285, 350
AfaI	GTAC	3 cut(s)	627, 1073, 1250
AfiI	CCNNNNNNNGG	4 cut(s)	179, 872, 1244, 1245
AhdI	GACNNNNNGTC	1 cut(s)	1087
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	3 cut(s)	468, 492, 865
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	7 cut(s)	263, 405, 612, 678, 1112, 1231, 1301
AluI	AGCT	7 cut(s)	263, 405, 612, 678, 1112, 1231, 1301
Alw26I	GTCTC	2 cut(s)	229, 925
AlwI	GGATC	3 cut(s)	695, 983, 1386
AlwNI	CAGNNNCTG	2 cut(s)	1112, 1390
AoxI	GGCC	4 cut(s)	340, 490, 862, 868
ApeKI	GCWGC	5 cut(s)	263, 828, 1165, 1185, 1188
ApoI	RAATTY	4 cut(s)	577, 668, 744, 774
Asp718I	GGTACC	1 cut(s)	1248
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	341, 863, 1309
AsuHPI	GGTGA	3 cut(s)	227, 454, 708
AsuII	TTCGAA	1 cut(s)	1040
AvaII	GGWCC	1 cut(s)	1309
BaeGI	GKGCMC	1 cut(s)	476
BalI	TGGCCA	2 cut(s)	492, 870
BanI	GGYRCC	2 cut(s)	473, 1248
BanII	GRGCYC	1 cut(s)	500
BarI	GAAGNNNNNNTAC	2 cut(s)	508, 540
BbvCI	CCTCAGC	1 cut(s)	1240
BbvI	GCAGC	5 cut(s)	250, 815, 1177, 1197, 1200
BccI	CCATC	6 cut(s)	212, 368, 379, 473, 482, 734
BciT130I	CCWGG	3 cut(s)	470, 494, 867
BciVI	GTATCC	1 cut(s)	823
BcoDI	GTCTC	2 cut(s)	229, 925
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	4 cut(s)	285, 513, 884, 1396
BfmI	CTRYAG	1 cut(s)	1113
BfoI	RGCGCY	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	823
BisI	GCNGC	6 cut(s)	252, 264, 829, 1166, 1186, 1189
BlsI	GCNGC	6 cut(s)	253, 265, 830, 1167, 1187, 1190
BmcAI	AGTACT	1 cut(s)	1073
Bme1390I	CCNGG	3 cut(s)	470, 494, 867
Bme18I	GGWCC	1 cut(s)	1309
BmeRI	GACNNNNNGTC	1 cut(s)	1087
BmgT120I	GGNCC	3 cut(s)	341, 863, 1309
BmiI	GGNNCC	6 cut(s)	184, 208, 390, 475, 1250, 1311
BmrFI	CCNGG	3 cut(s)	470, 494, 867
BpmI	CTGGAG	3 cut(s)	150, 702, 987
Bpu10I	CCTNAGC	1 cut(s)	1240
Bpu14I	TTCGAA	1 cut(s)	1040
BpuEI	CTTGAG	2 cut(s)	1217, 1354
Bsa29I	ATCGAT	1 cut(s)	486
BsaBI	GATNNNNATC	2 cut(s)	1212, 1347
BsaJI	CCNNGG	5 cut(s)	210, 469, 493, 865, 871
BsaWI	WCCGGW	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 872, 1244, 1245
Bse1I	ACTGG	6 cut(s)	167, 420, 509, 829, 1069, 1352
Bse8I	GATNNNNATC	2 cut(s)	1212, 1347
BseBI	CCWGG	3 cut(s)	470, 494, 867
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	5 cut(s)	210, 469, 493, 865, 871
BseGI	GGATG	2 cut(s)	8, 465
BseJI	GATNNNNATC	2 cut(s)	1212, 1347
BseLI	CCNNNNNNNGG	4 cut(s)	179, 872, 1244, 1245
BseMII	CTCAG	4 cut(s)	188, 668, 1137, 1254
BseNI	ACTGG	6 cut(s)	167, 420, 509, 829, 1069, 1352
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	5 cut(s)	250, 815, 1177, 1197, 1200
BsgI	GTGCAG	1 cut(s)	1184
BshFI	GGCC	4 cut(s)	342, 492, 864, 870
BshNI	GGYRCC	2 cut(s)	473, 1248
BshVI	ATCGAT	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	1165, 1295
BslI	CCNNNNNNNGG	4 cut(s)	179, 872, 1244, 1245
BsmAI	GTCTC	2 cut(s)	229, 925
BsmFI	GGGAC	2 cut(s)	1165, 1295
BsnI	GGCC	4 cut(s)	342, 492, 864, 870
Bsp119I	TTCGAA	1 cut(s)	1040
Bsp1286I	GDGCHC	2 cut(s)	476, 500
Bsp143I	GATC	4 cut(s)	687, 975, 1213, 1378
Bsp19I	CCATGG	1 cut(s)	871
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	4 cut(s)	342, 492, 864, 870
BspCNI	CTCAG	4 cut(s)	187, 667, 1136, 1253
BspDI	ATCGAT	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	6 cut(s)	184, 208, 390, 475, 1250, 1311
BspPI	GGATC	3 cut(s)	695, 983, 1386
BspQI	GCTCTTC	1 cut(s)	86
BspT104I	TTCGAA	1 cut(s)	1040
BspT107I	GGYRCC	2 cut(s)	473, 1248
BsrI	ACTGG	6 cut(s)	167, 420, 509, 829, 1069, 1352
BssECI	CCNNGG	5 cut(s)	210, 469, 493, 865, 871
BssMI	GATC	4 cut(s)	687, 975, 1213, 1378
BssT1I	CCWWGG	2 cut(s)	210, 871
Bst2UI	CCWGG	3 cut(s)	470, 494, 867
Bst4CI	ACNGT	4 cut(s)	24, 625, 809, 1079
Bst6I	CTCTTC	5 cut(s)	86, 339, 529, 535, 1333
BstBI	TTCGAA	1 cut(s)	1040
BstC8I	GCNNGC	2 cut(s)	268, 1183
BstDEI	CTNAG	5 cut(s)	174, 237, 654, 1123, 1240
BstDSI	CCRYGG	1 cut(s)	871
BstF5I	GGATG	2 cut(s)	8, 465
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	4 cut(s)	690, 978, 1216, 1381
BstMAI	GTCTC	2 cut(s)	229, 925
BstMBI	GATC	4 cut(s)	687, 975, 1213, 1378
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 260, 657
BstNI	CCWGG	3 cut(s)	470, 494, 867
BstSCI	CCNGG	3 cut(s)	468, 492, 865
BstSFI	CTRYAG	1 cut(s)	1113
BstSLI	GKGCMC	1 cut(s)	476
BstV1I	GCAGC	5 cut(s)	250, 815, 1177, 1197, 1200
BstXI	CCANNNNNNTGG	1 cut(s)	1148
Bsu15I	ATCGAT	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	4 cut(s)	342, 492, 864, 870
BsuTUI	ATCGAT	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	871
BtsCI	GGATG	2 cut(s)	8, 465
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	437, 588, 662
Cac8I	GCNNGC	2 cut(s)	268, 1183
CaiI	CAGNNNCTG	2 cut(s)	1112, 1390
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	341, 863, 1309
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	626, 1072, 1249
CviAII	CATG	7 cut(s)	134, 255, 408, 842, 872, 984, 1200
CviQI	GTAC	3 cut(s)	626, 1072, 1249
DdeI	CTNAG	5 cut(s)	174, 237, 654, 1123, 1240
DpnI	GATC	4 cut(s)	689, 977, 1215, 1380
DpnII	GATC	4 cut(s)	687, 975, 1213, 1378
DriI	GACNNNNNGTC	1 cut(s)	1087
EaeI	YGGCCR	2 cut(s)	490, 868
Eam1104I	CTCTTC	5 cut(s)	86, 339, 529, 535, 1333
Eam1105I	GACNNNNNGTC	1 cut(s)	1087
EarI	CTCTTC	5 cut(s)	86, 339, 529, 535, 1333
Eco130I	CCWWGG	2 cut(s)	210, 871
Eco24I	GRGCYC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	1309
Eco57I	CTGAAG	2 cut(s)	285, 350
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	744
EcoRII	CCWGG	3 cut(s)	468, 492, 865
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	210, 871
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	2 cut(s)	210, 871
FaeI	CATG	7 cut(s)	137, 258, 411, 845, 875, 987, 1203
FalI	AAGNNNNNCTT	2 cut(s)	898, 930
FaqI	GGGAC	2 cut(s)	1165, 1295
FatI	CATG	7 cut(s)	133, 254, 407, 841, 871, 983, 1199
FauNDI	CATATG	1 cut(s)	570
Fnu4HI	GCNGC	6 cut(s)	252, 264, 829, 1166, 1186, 1189
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	6 cut(s)	252, 264, 829, 1166, 1186, 1189
FspBI	CTAG	4 cut(s)	285, 513, 884, 1396
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	6 cut(s)	252, 264, 829, 1166, 1186, 1189
GsuI	CTGGAG	3 cut(s)	150, 702, 987
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	4 cut(s)	342, 492, 864, 870
HapII	CCGG	1 cut(s)	477
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	7 cut(s)	137, 258, 411, 845, 875, 987, 1203
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	5 cut(s)	137, 233, 306, 600, 1051
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	3 cut(s)	227, 454, 708
Hpy166II	GTNNAC	2 cut(s)	510, 697
Hpy188I	TCNGA	5 cut(s)	229, 369, 384, 502, 1056
Hpy188III	TCNNGA	6 cut(s)	31, 134, 303, 681, 966, 1357
Hpy8I	GTNNAC	2 cut(s)	510, 697
Hpy99I	CGWCG	2 cut(s)	233, 773
HpyAV	CCTTC	2 cut(s)	309, 1323
HpyCH4III	ACNGT	4 cut(s)	24, 625, 809, 1079
HpyCH4IV	ACGT	2 cut(s)	357, 768
HpyCH4V	TGCA	7 cut(s)	270, 550, 754, 1095, 1165, 1185, 1203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 260, 657
HpyF3I	CTNAG	5 cut(s)	174, 237, 654, 1123, 1240
HpySE526I	ACGT	2 cut(s)	357, 768
Hsp92II	CATG	7 cut(s)	137, 258, 411, 845, 875, 987, 1203
HspAI	GCGC	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	1252
Kzo9I	GATC	4 cut(s)	687, 975, 1213, 1378
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	6 cut(s)	163, 206, 394, 836, 1109, 1306
Lsp1109I	GCAGC	5 cut(s)	250, 815, 1177, 1197, 1200
MaeI	CTAG	4 cut(s)	285, 513, 884, 1396
MaeII	ACGT	2 cut(s)	357, 768
MaeIII	GTNAC	5 cut(s)	43, 619, 1079, 1293, 1371
MalI	GATC	4 cut(s)	689, 977, 1215, 1380
MboI	GATC	4 cut(s)	687, 975, 1213, 1378
MfeI	CAATTG	1 cut(s)	856
MhlI	GDGCHC	2 cut(s)	476, 500
MlsI	TGGCCA	2 cut(s)	492, 870
MluCI	AATT	8 cut(s)	541, 577, 668, 744, 774, 856, 930, 1146
MluNI	TGGCCA	2 cut(s)	492, 870
MmeI	TCCRAC	4 cut(s)	185, 252, 585, 1256
Mox20I	TGGCCA	2 cut(s)	492, 870
MscI	TGGCCA	2 cut(s)	492, 870
Msp20I	TGGCCA	2 cut(s)	492, 870
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	3 cut(s)	470, 494, 867
MunI	CAATTG	1 cut(s)	856
MvaI	CCWGG	3 cut(s)	470, 494, 867
MwoI	GCNNNNNNNGC	3 cut(s)	248, 260, 657
NcoI	CCATGG	1 cut(s)	871
NdeI	CATATG	1 cut(s)	570
NdeII	GATC	4 cut(s)	687, 975, 1213, 1378
NlaIII	CATG	7 cut(s)	137, 258, 411, 845, 875, 987, 1203
NlaIV	GGNNCC	6 cut(s)	184, 208, 390, 475, 1250, 1311
NmuCI	GTSAC	5 cut(s)	43, 619, 1079, 1293, 1371
NspV	TTCGAA	1 cut(s)	1040
PagI	TCATGA	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	86
PfeI	GAWTC	5 cut(s)	137, 233, 306, 600, 1051
PkrI	GCNGC	6 cut(s)	253, 265, 830, 1167, 1187, 1190
Psp6I	CCWGG	3 cut(s)	468, 492, 865
PspGI	CCWGG	3 cut(s)	468, 492, 865
PspN4I	GGNNCC	6 cut(s)	184, 208, 390, 475, 1250, 1311
PspPI	GGNCC	3 cut(s)	341, 863, 1309
PstNI	CAGNNNCTG	2 cut(s)	1112, 1390
RsaI	GTAC	3 cut(s)	627, 1073, 1250
RsaNI	GTAC	3 cut(s)	626, 1072, 1249
SapI	GCTCTTC	1 cut(s)	86
SatI	GCNGC	6 cut(s)	252, 264, 829, 1166, 1186, 1189
Sau3AI	GATC	4 cut(s)	687, 975, 1213, 1378
Sau96I	GGNCC	3 cut(s)	341, 863, 1309
ScaI	AGTACT	1 cut(s)	1073
ScrFI	CCNGG	3 cut(s)	470, 494, 867
SduI	GDGCHC	2 cut(s)	476, 500
SfcI	CTRYAG	1 cut(s)	1113
SfuI	TTCGAA	1 cut(s)	1040
SinI	GGWCC	1 cut(s)	1309
SmlI	CTYRAG	2 cut(s)	1232, 1333
SmoI	CTYRAG	2 cut(s)	1232, 1333
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	8 cut(s)	541, 577, 668, 744, 774, 856, 930, 1146
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	4 cut(s)	285, 513, 884, 1396
StyD4I	CCNGG	3 cut(s)	468, 492, 865
StyI	CCWWGG	2 cut(s)	210, 871
TaaI	ACNGT	4 cut(s)	24, 625, 809, 1079
TaiI	ACGT	2 cut(s)	360, 771
TaqI	TCGA	4 cut(s)	486, 771, 1040, 1356
TasI	AATT	8 cut(s)	541, 577, 668, 744, 774, 856, 930, 1146
TatI	WGTACW	1 cut(s)	1071
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	5 cut(s)	137, 233, 306, 600, 1051
TscAI	CASTG	3 cut(s)	437, 595, 662
TseFI	GTSAC	5 cut(s)	43, 619, 1079, 1293, 1371
TseI	GCWGC	5 cut(s)	263, 828, 1165, 1185, 1188
Tsp45I	GTSAC	5 cut(s)	43, 619, 1079, 1293, 1371
TspDTI	ATGAA	6 cut(s)	443, 767, 830, 836, 1163, 1359
TspRI	CASTG	3 cut(s)	437, 595, 662
VpaK11BI	GGWCC	1 cut(s)	1309
XapI	RAATTY	4 cut(s)	577, 668, 744, 774
XspI	CTAG	4 cut(s)	285, 513, 884, 1396
ZrmI	AGTACT	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.