Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018332

Physical Location & Seq

Genomic Coordinates Reverse (-)

9791267 .. 9793023

Gene Structure 1757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCGGCTCCGTCGCCGTCTTCACCACCAAACCTCCTCTCTCCTCCACCATTCCGATCTCCCGAAGCTTCTTACTTTCTCCGAACTTGTTCAAATTTCTCTCAATTGAAACAAATTCACACCAAAATCATCAAACACAATCTCACCAACGATCAGTTACTAGTTCGTCAGCTCATAAGTGTTTCTTCTTCCTTCGGAGAAACCCAATACGCTTCTCTCGTCTTTAATCAACTTCAATCTCCTTCTACTTTTACCTGGAACCTTATGATAAGATCTCTCTCTGTTAATCACAAACCTCGTGAAGCTCTTCTTCTCTTTATCCTTATGATGATCTCTCATCAATCCCAGTTTGATAAATTCACTTTCCCTTTTGTTATCAAAGCTTGTCTCGCTTCTTCGTCGATTCGTTTAGGTACCCAAGTTCATGGTTTAGCTATTAAAGCTGGGTTTTTTAATGATGTCTTCTTCCAAAACACTCTCATGGATCTTTACTTTAAGTGTGGGAAACCAGATAGTGGACGTAAGGTGTTTGATAAAATGCCTGGGAGAAGTATTGTTTCATGGACTACTATGCTTTATGGTCTTGTCTCCAATTCTCAGTTAGATTCTGCAGAGATTGTATTCAATCAAATGCCAATGAGAAACGTTGTTTCATGGACTGCAATGATTACGGCTTACGTTAAGAACCGTAGACCCGACGAGGCGTTTCAGCTCTTTAGGAGAATGCAGGTTGATGATGTCAAGCCTAATGAGTTTACGATTGTTAATTTGTTGCAAGCTTCTACTCAGTTAGGAAGCTTGTCTATGGGAAGATGGGTTCATGACTATGCTCATAAAAACGGTTTTGTGCTTGATTGTTTCCTTGGAACCGCTTTGATCGATATGTATAGCAAATGTGGAAGCTTGCAGGACGCAAGGAAAGTATTTGACGTGATGCAGGGTAAGAGTTTAGCGACTTGGAACTCGATGATCACTAGCTTAGGGGTACATGGATGTGGTGAAGAGGCTTTGTCTCTGTTTGAAGAGATGGAAGAAGAAGCAAGCGTAGAACCAGACGCTATCACTTTCGTTGGTGTCTTATCCGCTTGTGCGAATACTGGAAATGTAAAGGATGGTTTGAGGTACTTTACTCGGATGATCCAAGTTTACGGTATCTCACCTATTCGAGAACATAATGCTTGTATGATCCAATTGTTGGAGCAAGCCCTTGAGGTGGAGAAAGCTTCAAACTTGGTTGAATCCATGGATTCTGATCCAGACTTCAATTCTTCATTTGGTAATGAATACACGGATGGAATGAATGAAACGAACGAAACTCCGAGCCAACATCAAATTATGTTCACCAAGTGGGATACAGGCCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

455

Amino Acids

51.22

Weight (kDa)

6.08

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	214 - 259	4.5e-12	PPR repeat family
PPR	PF01535	217 - 245	1.1e-08	PPR repeat
PPR_2	PF13041	317 - 365	6.8e-09	PPR repeat family
PPR	PF01535	319 - 346	3.2e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26630
prunus_persica	Prupe.3G315700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0176761
rosa_laevigata	RLG00000022444
rosa_roxburghii	Rroxscaffold_2G00076180
rosa_samantha	Rh2AG675900 Rh2BG687000 Rh2CG650400 Rh2DG701300
rosa_wichuraiana	Rw2G055460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	718
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	413
AccB7I	CCANNNNNTGG	2 cut(s)	515, 1195
AccI	GTMKAC	1 cut(s)	691
AciI	CCGC	3 cut(s)	5, 870, 1083
AclI	AACGTT	1 cut(s)	645
AclWI	GGATC	4 cut(s)	492, 1132, 1180, 1247
AcsI	RAATTY	3 cut(s)	94, 114, 356
AdeI	CACNNNGTG	1 cut(s)	1347
AfaI	GTAC	3 cut(s)	415, 987, 1124
AfiI	CCNNNNNNNGG	3 cut(s)	515, 1195, 1213
AgsI	TTSAA	8 cut(s)	93, 109, 236, 625, 1022, 1227, 1238, 1264
AhlI	ACTAGT	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	931
AjnI	CCWGG	2 cut(s)	254, 541
AloI	GAACNNNNNNTCC	2 cut(s)	801, 833
Alw26I	GTCTC	3 cut(s)	392, 592, 1017
AlwI	GGATC	4 cut(s)	492, 1132, 1180, 1247
AoxI	GGCC	1 cut(s)	1357
ApoI	RAATTY	3 cut(s)	94, 114, 356
Asp700I	GAANNNNTTC	2 cut(s)	88, 306
Asp718I	GGTACC	1 cut(s)	413
AsuHPI	GGTGA	5 cut(s)	15, 136, 1010, 1149, 1333
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanI	GGYRCC	1 cut(s)	413
BauI	CACGAG	1 cut(s)	297
BbsI	GAAGAC	2 cut(s)	12, 454
BccI	CCATC	4 cut(s)	807, 1021, 1106, 1286
BceAI	ACGGC	1 cut(s)	687
BciT130I	CCWGG	2 cut(s)	256, 543
BciVI	GTATCC	1 cut(s)	1345
BclI	TGATCA	1 cut(s)	969
BcoDI	GTCTC	3 cut(s)	392, 592, 1017
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	2 cut(s)	161, 975
BfmI	CTRYAG	1 cut(s)	609
BfuAI	ACCTGC	1 cut(s)	718
BfuI	GTATCC	1 cut(s)	1345
BglII	AGATCT	1 cut(s)	272
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	256, 543
BmgBI	CACGTC	1 cut(s)	931
BmiI	GGNNCC	4 cut(s)	9, 260, 415, 868
BmrFI	CCNGG	2 cut(s)	256, 543
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	924
BmuI	ACTGGG	1 cut(s)	340
BpiI	GAAGAC	2 cut(s)	12, 454
Bpu10I	CCTNAGC	1 cut(s)	979
BpuEI	CTTGAG	1 cut(s)	1229
Bsa29I	ATCGAT	1 cut(s)	879
BsaBI	GATNNNNATC	1 cut(s)	1251
BsaJI	CCNNGG	3 cut(s)	542, 862, 1242
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	3 cut(s)	515, 1195, 1213
Bse1I	ACTGG	2 cut(s)	346, 1102
Bse3DI	GCAATG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	1251
BseBI	CCWGG	2 cut(s)	256, 543
BseCI	ATCGAT	1 cut(s)	879
BseDI	CCNNGG	3 cut(s)	542, 862, 1242
BseGI	GGATG	4 cut(s)	998, 1117, 1140, 1297
BseJI	GATNNNNATC	1 cut(s)	1251
BseLI	CCNNNNNNNGG	3 cut(s)	515, 1195, 1213
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	2 cut(s)	611, 800
BseNI	ACTGG	2 cut(s)	346, 1102
BseRI	GAGGAG	2 cut(s)	26, 33
BseYI	CCCAGC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	1359
BshNI	GGYRCC	1 cut(s)	413
BshVI	ATCGAT	1 cut(s)	879
BslI	CCNNNNNNNGG	3 cut(s)	515, 1195, 1213
BsmAI	GTCTC	3 cut(s)	392, 592, 1017
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	1 cut(s)	1359
Bsp19I	CCATGG	1 cut(s)	1242
BspACI	CCGC	3 cut(s)	5, 870, 1083
BspANI	GGCC	1 cut(s)	1359
BspCNI	CTCAG	2 cut(s)	610, 799
BspDI	ATCGAT	1 cut(s)	879
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	4 cut(s)	9, 260, 415, 868
BspMAI	CTGCAG	1 cut(s)	613
BspMI	ACCTGC	1 cut(s)	718
BspPI	GGATC	4 cut(s)	492, 1132, 1180, 1247
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	2 cut(s)	346, 1102
BssECI	CCNNGG	3 cut(s)	542, 862, 1242
BssSI	CACGAG	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	862, 1242
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	256, 543
Bst4CI	ACNGT	3 cut(s)	689, 842, 1151
Bst6I	CTCTTC	3 cut(s)	312, 996, 1017
BstC8I	GCNNGC	4 cut(s)	777, 905, 1042, 1203
BstDEI	CTNAG	3 cut(s)	597, 786, 979
BstDSI	CCRYGG	1 cut(s)	1242
BstF5I	GGATG	4 cut(s)	998, 1117, 1140, 1297
BstMAI	GTCTC	3 cut(s)	392, 592, 1017
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 440
BstNI	CCWGG	2 cut(s)	256, 543
BstSCI	CCNGG	2 cut(s)	254, 541
BstSFI	CTRYAG	1 cut(s)	609
BstV2I	GAAGAC	2 cut(s)	12, 454
BstX2I	RGATCY	2 cut(s)	272, 484
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	2 cut(s)	272, 484
Bsu15I	ATCGAT	1 cut(s)	879
BsuI	GTATCC	1 cut(s)	1345
BsuRI	GGCC	1 cut(s)	1359
BsuTUI	ATCGAT	1 cut(s)	879
BtgI	CCRYGG	1 cut(s)	1242
BtrI	CACGTC	1 cut(s)	931
BtsCI	GGATG	4 cut(s)	998, 1117, 1140, 1297
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	4 cut(s)	777, 905, 1042, 1203
CciI	TCATGA	1 cut(s)	820
ClaI	ATCGAT	1 cut(s)	879
CseI	GACGC	2 cut(s)	920, 1064
Csp6I	GTAC	3 cut(s)	414, 986, 1123
CviAII	CATG	7 cut(s)	425, 481, 561, 654, 821, 989, 1243
CviQI	GTAC	3 cut(s)	414, 986, 1123
DdeI	CTNAG	3 cut(s)	597, 786, 979
DraIII	CACNNNGTG	1 cut(s)	1347
Eam1104I	CTCTTC	3 cut(s)	312, 996, 1017
EarI	CTCTTC	3 cut(s)	312, 996, 1017
Eco130I	CCWWGG	2 cut(s)	862, 1242
EcoRII	CCWGG	2 cut(s)	254, 541
EcoT14I	CCWWGG	2 cut(s)	862, 1242
ErhI	CCWWGG	2 cut(s)	862, 1242
FaeI	CATG	7 cut(s)	428, 484, 564, 657, 824, 992, 1246
FalI	AAGNNNNNCTT	4 cut(s)	169, 201, 294, 326
FatI	CATG	7 cut(s)	424, 480, 560, 653, 820, 988, 1242
FbaI	TGATCA	1 cut(s)	969
FblI	GTMKAC	1 cut(s)	691
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	4 cut(s)	1005, 1124, 1147, 1304
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	161, 975
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	1359
HgaI	GACGC	2 cut(s)	920, 1064
Hin1II	CATG	7 cut(s)	428, 484, 564, 657, 824, 992, 1246
HindIII	AAGCTT	6 cut(s)	66, 381, 777, 796, 901, 1221
HinfI	GANTC	4 cut(s)	403, 605, 1238, 1247
HphI	GGTGA	5 cut(s)	15, 136, 1010, 1149, 1333
Hpy166II	GTNNAC	5 cut(s)	518, 692, 756, 1147, 1341
Hpy188I	TCNGA	6 cut(s)	56, 83, 197, 1134, 1252, 1320
Hpy188III	TCNNGA	5 cut(s)	62, 299, 821, 1166, 1256
Hpy8I	GTNNAC	5 cut(s)	518, 692, 756, 1147, 1341
Hpy99I	CGWCG	3 cut(s)	16, 403, 701
HpyAV	CCTTC	2 cut(s)	202, 252
HpyCH4III	ACNGT	3 cut(s)	689, 842, 1151
HpyCH4IV	ACGT	4 cut(s)	520, 645, 678, 930
HpyCH4V	TGCA	6 cut(s)	611, 662, 727, 775, 907, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 440
HpyF3I	CTNAG	3 cut(s)	597, 786, 979
HpySE526I	ACGT	4 cut(s)	520, 645, 678, 930
Hsp92II	CATG	7 cut(s)	428, 484, 564, 657, 824, 992, 1246
KpnI	GGTACC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	969
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	13, 1198
LweI	GCATC	1 cut(s)	924
MaeI	CTAG	2 cut(s)	161, 975
MaeII	ACGT	4 cut(s)	520, 645, 678, 930
MaeIII	GTNAC	1 cut(s)	156
MfeI	CAATTG	2 cut(s)	104, 1190
MflI	RGATCY	2 cut(s)	272, 484
MluCI	AATT	9 cut(s)	94, 104, 114, 356, 592, 766, 1190, 1264, 1332
MmeI	TCCRAC	1 cut(s)	1176
MnlI	CCTC	8 cut(s)	44, 47, 54, 306, 694, 997, 1113, 1204
MroXI	GAANNNNTTC	2 cut(s)	88, 306
MseI	TTAA	7 cut(s)	225, 285, 438, 453, 495, 681, 765
MslI	CAYNNNNRTG	3 cut(s)	479, 825, 993
MspR9I	CCNGG	2 cut(s)	256, 543
MunI	CAATTG	2 cut(s)	104, 1190
Mva1269I	GAATGC	1 cut(s)	729
MvaI	CCWGG	2 cut(s)	256, 543
MwoI	GCNNNNNNNGC	2 cut(s)	389, 440
NcoI	CCATGG	1 cut(s)	1242
NlaIII	CATG	7 cut(s)	428, 484, 564, 657, 824, 992, 1246
NlaIV	GGNNCC	4 cut(s)	9, 260, 415, 868
PagI	TCATGA	1 cut(s)	820
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	729
PdmI	GAANNNNTTC	2 cut(s)	88, 306
PfeI	GAWTC	4 cut(s)	403, 605, 1238, 1247
PflMI	CCANNNNNTGG	2 cut(s)	515, 1195
PkrI	GCNGC	1 cut(s)	7
Psp1406I	AACGTT	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	254, 541
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	2 cut(s)	254, 541
PspN4I	GGNNCC	4 cut(s)	9, 260, 415, 868
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	272, 484
RsaI	GTAC	3 cut(s)	415, 987, 1124
RsaNI	GTAC	3 cut(s)	414, 986, 1123
RseI	CAYNNNNRTG	3 cut(s)	479, 825, 993
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	7 cut(s)	225, 285, 438, 453, 495, 681, 765
SatI	GCNGC	1 cut(s)	6
ScrFI	CCNGG	2 cut(s)	256, 543
SfaNI	GCATC	1 cut(s)	924
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	3 cut(s)	479, 825, 993
SmlI	CTYRAG	1 cut(s)	1208
SmoI	CTYRAG	1 cut(s)	1208
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	9 cut(s)	94, 104, 114, 356, 592, 766, 1190, 1264, 1332
SsiI	CCGC	3 cut(s)	5, 870, 1083
SspMI	CTAG	2 cut(s)	161, 975
StyD4I	CCNGG	2 cut(s)	254, 541
StyI	CCWWGG	2 cut(s)	862, 1242
TaaI	ACNGT	3 cut(s)	689, 842, 1151
TaiI	ACGT	4 cut(s)	523, 648, 681, 933
TaqI	TCGA	4 cut(s)	401, 879, 965, 1165
TasI	AATT	9 cut(s)	94, 104, 114, 356, 592, 766, 1190, 1264, 1332
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	403, 605, 1238, 1247
Tru1I	TTAA	7 cut(s)	225, 285, 438, 453, 495, 681, 765
Tru9I	TTAA	7 cut(s)	225, 285, 438, 453, 495, 681, 765
TspDTI	ATGAA	8 cut(s)	413, 549, 642, 809, 1260, 1296, 1313, 1317
TspGWI	ACGGA	1 cut(s)	1304
Van91I	CCANNNNNTGG	2 cut(s)	515, 1195
XapI	RAATTY	3 cut(s)	94, 114, 356
XmiI	GTMKAC	1 cut(s)	691
XmnI	GAANNNNTTC	2 cut(s)	88, 306
XspI	CTAG	2 cut(s)	161, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.