Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0018332

Physical Location & Seq

Genomic Coordinates Forward (+)

82853787 .. 82854530

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G055460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCGGGTTCGCAGTGTGGTTTCATGGACAACCATGATTTCGGGGTTAGTTGCTTGTGGGAAGTTATCTGCTGCCCGAGGGGTTTTTGAGCGAATGCCAGCTAAAAATGTTGTTTCTTGGACTGCAATGATCAATGGGTATGTCAAAAACCAACAACCTGAAGAGGCATTTGAACTGTTCTGGAGAATGCAGCTTGGTAATGTTAGGCCAAATGAGTTCACGCTGGTAAGCTTGCTGAAAGCATGTACCCAATTCGAAAGCCTCAAGTTGGCTAGACGGATTCATGACTTTGCTCTTAAAAACGGGTTTAAAATTGATGTTTTTCTTGGCACAGCACTTATTGATACTTATAGCAAATGTGGTAGTTTAGAGGATGCAAAGAGAGTGTTTGATAAGATGCAAATCAAGAGCTTGGCTACTTGGAATTCAATGATCACTAGCTTGGGTGTGCATGGGTTTGGAGAGGAAGCCCTTGCCCTTTTTGCAGAGATGGAAGAGGCGAATGTACGGCCAGATGCAATCACCTTTGTAGGTGTTTTATCTGCTTGTTTGCATACCAATAATCTGGAGGATGGTTGCAGACATTTCAAATACATGAGTGAACGTTATGGTATCACACCTATCTTAGAGAATTATACTTGCATGATTGAACTGTATAGCCGTTTTGACATGTTAGATGAGGTATGCAAATTAGTAGAAGCCATGCCTGTAAAGCCTAATAGAACTAAGGAACGTCATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

247

Amino Acids

28.06

Weight (kDa)

8.13

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	7 - 36	3.1e-06	PPR repeat
PPR_2	PF13041	35 - 82	1e-13	PPR repeat family
PPR	PF01535	38 - 64	2.6e-08	PPR repeat
PPR_2	PF13041	138 - 184	2e-09	PPR repeat family
PPR	PF01535	140 - 169	1.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26630
prunus_persica	Prupe.3G315700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0176761
rosa_laevigata	RLG00000022444
rosa_roxburghii	Rroxscaffold_2G00076180
rosa_samantha	Rh2AG675900 Rh2BG687000 Rh2CG650400 Rh2DG701300
rosa_wichuraiana	Rw2G055460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AclI	AACGTT	1 cut(s)	604
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	247, 507
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	4 cut(s)	173, 429, 589, 650
AluBI	AGCT	5 cut(s)	101, 193, 231, 411, 441
AluI	AGCT	5 cut(s)	101, 193, 231, 411, 441
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	2 cut(s)	206, 509
ApeKI	GCWGC	2 cut(s)	71, 190
ApoI	RAATTY	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	514
AsuII	TTCGAA	1 cut(s)	255
AvaI	CYCGRG	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	58, 202
BccI	CCATC	2 cut(s)	484, 566
BceAI	ACGGC	2 cut(s)	524, 645
BclI	TGATCA	2 cut(s)	129, 432
BfaI	CTAG	2 cut(s)	273, 438
BisI	GCNGC	2 cut(s)	72, 191
BlsI	GCNGC	2 cut(s)	73, 192
BmeT110I	CYCGRG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	364, 387, 505
BpmI	CTGGAG	2 cut(s)	202, 587
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	379, 577
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	58, 202
BshFI	GGCC	2 cut(s)	208, 511
BsiHKCI	CYCGRG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmI	GAATGC	2 cut(s)	99, 192
BsnI	GGCC	2 cut(s)	208, 511
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	129, 432
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	208, 511
BspHI	TCATGA	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	129, 432
Bst4CI	ACNGT	2 cut(s)	177, 654
Bst6I	CTCTTC	2 cut(s)	156, 489
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	99, 233
BstDEI	CTNAG	2 cut(s)	625, 726
BstF5I	GGATG	2 cut(s)	379, 577
BstKTI	GATC	2 cut(s)	132, 435
BstMBI	GATC	2 cut(s)	129, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 712
BstNSI	RCATGY	2 cut(s)	246, 673
BstV1I	GCAGC	2 cut(s)	58, 202
BstXI	CCANNNNNNTGG	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	208, 511
BtsCI	GGATG	2 cut(s)	379, 577
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	99, 233
CciI	TCATGA	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	246, 506
CviAII	CATG	9 cut(s)	24, 34, 243, 284, 452, 595, 643, 670, 703
CviQI	GTAC	2 cut(s)	246, 506
DdeI	CTNAG	2 cut(s)	625, 726
DpnI	GATC	2 cut(s)	131, 434
DpnII	GATC	2 cut(s)	129, 432
DraI	TTTAAA	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	2 cut(s)	156, 489
EarI	CTCTTC	2 cut(s)	156, 489
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	424
FaeI	CATG	9 cut(s)	27, 37, 246, 287, 455, 598, 646, 673, 706
FatI	CATG	9 cut(s)	23, 33, 242, 283, 451, 594, 642, 669, 702
FbaI	TGATCA	2 cut(s)	129, 432
Fnu4HI	GCNGC	2 cut(s)	72, 191
FokI	GGATG	2 cut(s)	386, 584
Fsp4HI	GCNGC	2 cut(s)	72, 191
FspBI	CTAG	2 cut(s)	273, 438
GluI	GCNGC	2 cut(s)	72, 191
GsuI	CTGGAG	2 cut(s)	202, 587
HaeIII	GGCC	2 cut(s)	208, 511
Hin1II	CATG	9 cut(s)	27, 37, 246, 287, 455, 598, 646, 673, 706
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	219, 602
Hpy188III	TCNNGA	4 cut(s)	181, 284, 406, 566
Hpy8I	GTNNAC	2 cut(s)	219, 602
HpyCH4III	ACNGT	2 cut(s)	177, 654
HpyCH4IV	ACGT	2 cut(s)	604, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 712
HpyF3I	CTNAG	2 cut(s)	625, 726
HpySE526I	ACGT	2 cut(s)	604, 733
Hsp92II	CATG	9 cut(s)	27, 37, 246, 287, 455, 598, 646, 673, 706
Ksp22I	TGATCA	2 cut(s)	129, 432
Kzo9I	GATC	2 cut(s)	129, 432
LpnPI	CCDG	7 cut(s)	111, 166, 171, 209, 525, 551, 720
Lsp1109I	GCAGC	2 cut(s)	58, 202
LweI	GCATC	3 cut(s)	364, 387, 505
MaeI	CTAG	2 cut(s)	273, 438
MaeII	ACGT	2 cut(s)	604, 733
MalI	GATC	2 cut(s)	131, 434
MboI	GATC	2 cut(s)	129, 432
MboII	GAAGA	2 cut(s)	173, 506
MluCI	AATT	5 cut(s)	251, 312, 424, 631, 689
MnlI	CCTC	8 cut(s)	71, 157, 272, 364, 457, 490, 562, 673
MseI	TTAA	2 cut(s)	297, 309
Mva1269I	GAATGC	2 cut(s)	99, 192
MwoI	GCNNNNNNNGC	2 cut(s)	482, 712
NdeII	GATC	2 cut(s)	129, 432
NlaIII	CATG	9 cut(s)	27, 37, 246, 287, 455, 598, 646, 673, 706
NspI	RCATGY	2 cut(s)	246, 673
NspV	TTCGAA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	283
PciI	ACATGT	1 cut(s)	669
PctI	GAATGC	2 cut(s)	99, 192
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	73, 192
PscI	ACATGT	1 cut(s)	669
Psp1406I	AACGTT	1 cut(s)	604
RsaI	GTAC	2 cut(s)	247, 507
RsaNI	GTAC	2 cut(s)	246, 506
SaqAI	TTAA	2 cut(s)	297, 309
SatI	GCNGC	2 cut(s)	72, 191
Sau3AI	GATC	2 cut(s)	129, 432
SfaNI	GCATC	3 cut(s)	364, 387, 505
SfuI	TTCGAA	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	5 cut(s)	251, 312, 424, 631, 689
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	273, 438
TaaI	ACNGT	2 cut(s)	177, 654
TaiI	ACGT	2 cut(s)	607, 736
TaqI	TCGA	1 cut(s)	255
TasI	AATT	5 cut(s)	251, 312, 424, 631, 689
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	297, 309
Tru9I	TTAA	2 cut(s)	297, 309
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	2 cut(s)	71, 190
TspDTI	ATGAA	2 cut(s)	12, 272
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	2 cut(s)	246, 673
XspI	CTAG	2 cut(s)	273, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.