Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018332

Physical Location & Seq

Genomic Coordinates Reverse (-)

100249 .. 101550

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGATGGTTGCATGCCTTTCATGTACTCCTGAGGTTCTACCCAAAAGTAACCCACTCACCAGCTGTAGACAAACCAAATTTGGTTCTCAGGAAGCTCTCATTTTACTCCGAAACTGCACCACTTTCAATCATCTCAAGCAAATTCATGCCAAGATCATCCGCAGTAGTCTTTCTCAAGACCAATTAATTATTAGGAAACTCATTCAACTTTGTTCTTCCCATGGGAAAATGGACTATGCCACTCTTCTATTTCATCAAATTCAGGGTCACCTTACCTTTACTTGGAATCTAATGATTATGTATTATACCATCAACGGGTGCTCACAACAAGCCCTCCTTCTGTATAGCCATATGATACGCCAAGTTCCACCCGACAAGTTCACCTTTCCATTTGTTATTAAAGCTTGCATTTCTTCTACTGCATTTGAACTAGGAAAAGTGGTTCATGGGCTAGTGATCAAAAATAGTTTCTCAAGAGATATATTCGTACAAAATACTTTGATGGACTTCTACTTCAAGTCCGGACAAATAGATTGTGGTTGCAGGGTGTTTGAAAAAATGCGGGTTCGCAGTGTGGTTTCATGGACAACCATGATATCGGGGTTAGTTGCTTGTGGGGAGTTACGTGCTGCCCGAGCGGTTTTTGAGCGAATGCCAGCTAAAAATGTTGTTTCTTGGACCGCAATGATCAATGGGTATGTCAAAAACCAACAACCTGAAGAGGCATTTGAACTGTTCTGGAGAATGCAGCTTGGTAATGTTAGGCCAAATGAGTTCACGCTGGTAAGCTTGCTGAAGGCATGTACCCAATTCGAAAGCCTCAAGTTGGCTAGACGGATTCATGACTCTGCTCTTAAGAAGGGGTTTAAAATTGATGTTTTTCTTGGCACAGCACTTATTGATACTTACAGCAAATGTGGTAGTTTAGAGGATGCAAAGAGAGTGTTTGATAAGATGCAAATCAAGAGCTTGGCTACTTGGAATTCAATGATCACTAGCTTGGGTGTGCATGGGTTTGGAGAGGAAGCCCTAGCCGTTTTTGCAGAGATGGAAGAGGCGAGTGTACGGCCAGATGCAATCACCTTTGTAGGTGTTTTATCTGCTTGTTTGCATACCAATAATCTGGAGGATGGTTGCAAACATTTCAAATACATGACTGAACGTTATGGTATTACACCTATCTTAGAACATTATACTCGCATGATTGAACTGTATAACCGTGCTGACATGTTAGATGAGGTATGCAAATTAGTGAAAGCCATGCCTGTAAAGCCTAATAGAACTAAGGAACACCATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

433

Amino Acids

49.29

Weight (kDa)

9.05

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	92 - 136	3.7e-06	PPR repeat family
PPR_2	PF13041	221 - 268	2.4e-13	PPR repeat family
PPR	PF01535	224 - 250	5.5e-08	PPR repeat
PPR_2	PF13041	324 - 370	2.8e-08	PPR repeat family
PPR	PF01535	326 - 353	9.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26630
prunus_persica	Prupe.3G315700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0176761
rosa_laevigata	RLG00000022444
rosa_roxburghii	Rroxscaffold_2G00076180
rosa_samantha	Rh2AG675900 Rh2BG687000 Rh2CG650400 Rh2DG701300
rosa_wichuraiana	Rw2G055460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	521
AciI	CCGC	4 cut(s)	160, 562, 638, 681
AclI	AACGTT	1 cut(s)	1162
AcoI	YGGCCR	1 cut(s)	1067
AcsI	RAATTY	4 cut(s)	77, 141, 258, 982
AcuI	CTGAAG	2 cut(s)	738, 815
AfaI	GTAC	4 cut(s)	25, 489, 805, 1065
AfiI	CCNNNNNNNGG	3 cut(s)	282, 315, 826
AflII	CTTAAG	1 cut(s)	854
AflIII	ACRYGT	1 cut(s)	1227
AgsI	TTSAA	9 cut(s)	127, 206, 428, 517, 554, 731, 987, 1147, 1208
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	8 cut(s)	63, 95, 404, 659, 751, 789, 969, 999
AluI	AGCT	8 cut(s)	63, 95, 404, 659, 751, 789, 969, 999
Alw21I	GWGCWC	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	521
AoxI	GGCC	2 cut(s)	764, 1067
ApeKI	GCWGC	2 cut(s)	629, 748
ApoI	RAATTY	4 cut(s)	77, 141, 258, 982
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AseI	ATTAAT	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	678
AsuHPI	GGTGA	4 cut(s)	49, 260, 373, 1072
AsuII	TTCGAA	1 cut(s)	813
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	678
AxyI	CCTNAGG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	616, 760
BccI	CCATC	4 cut(s)	317, 496, 1042, 1124
BceAI	ACGGC	2 cut(s)	1019, 1082
BclI	TGATCA	3 cut(s)	456, 687, 990
BfaI	CTAG	5 cut(s)	431, 452, 831, 996, 1031
BfmI	CTRYAG	1 cut(s)	64
BfrI	CTTAAG	1 cut(s)	854
BisI	GCNGC	2 cut(s)	630, 749
BlsI	GCNGC	2 cut(s)	631, 750
Bme18I	GGWCC	1 cut(s)	678
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	678
BmsI	GCATC	3 cut(s)	922, 945, 1063
BpmI	CTGGAG	2 cut(s)	760, 1145
Bpu14I	TTCGAA	1 cut(s)	813
BpuEI	CTTGAG	4 cut(s)	119, 159, 457, 806
BsaAI	YACGTR	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	959
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 315, 826
Bse21I	CCTNAGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	959
BseAI	TCCGGA	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	3 cut(s)	156, 937, 1135
BseJI	GATNNNNATC	1 cut(s)	959
BseLI	CCNNNNNNNGG	3 cut(s)	282, 315, 826
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	2 cut(s)	21, 101
BseXI	GCAGC	2 cut(s)	616, 760
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	766, 1069
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	3 cut(s)	282, 315, 826
BsmI	GAATGC	2 cut(s)	657, 750
BsnI	GGCC	2 cut(s)	766, 1069
BsoBI	CYCGRG	1 cut(s)	633
Bsp119I	TTCGAA	1 cut(s)	813
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp13I	TCCGGA	1 cut(s)	521
Bsp143I	GATC	4 cut(s)	153, 456, 687, 990
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	4 cut(s)	160, 562, 638, 681
BspANI	GGCC	2 cut(s)	766, 1069
BspCNI	CTCAG	2 cut(s)	22, 100
BspEI	TCCGGA	1 cut(s)	521
BspHI	TCATGA	1 cut(s)	841
BspT104I	TTCGAA	1 cut(s)	813
BspTI	CTTAAG	1 cut(s)	854
BsrBI	CCGCTC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	4 cut(s)	153, 456, 687, 990
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	735, 1212, 1220
Bst6I	CTCTTC	3 cut(s)	249, 714, 1047
BstAFI	CTTAAG	1 cut(s)	854
BstBAI	YACGTR	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	813
BstC8I	GCNNGC	4 cut(s)	13, 406, 657, 791
BstDEI	CTNAG	4 cut(s)	30, 87, 1183, 1284
BstDSI	CCRYGG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	3 cut(s)	156, 937, 1135
BstKTI	GATC	4 cut(s)	156, 459, 690, 993
BstMBI	GATC	4 cut(s)	153, 456, 687, 990
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 1040, 1270
BstNSI	RCATGY	3 cut(s)	15, 804, 1231
BstPI	GGTNACC	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	616, 760
BstXI	CCANNNNNNTGG	1 cut(s)	1123
Bsu36I	CCTNAGG	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	766, 1069
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	156, 937, 1135
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	4 cut(s)	13, 406, 657, 791
CciI	TCATGA	1 cut(s)	841
Cfr13I	GGNCC	1 cut(s)	678
Csp6I	GTAC	4 cut(s)	24, 488, 804, 1064
CviQI	GTAC	4 cut(s)	24, 488, 804, 1064
DdeI	CTNAG	4 cut(s)	30, 87, 1183, 1284
DpnI	GATC	4 cut(s)	155, 458, 689, 992
DpnII	GATC	4 cut(s)	153, 456, 687, 990
DraI	TTTAAA	1 cut(s)	868
EaeI	YGGCCR	1 cut(s)	1067
Eam1104I	CTCTTC	3 cut(s)	249, 714, 1047
EarI	CTCTTC	3 cut(s)	249, 714, 1047
Eco130I	CCWWGG	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	678
Eco57I	CTGAAG	2 cut(s)	738, 815
Eco81I	CCTNAGG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	633
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	982
EcoRV	GATATC	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 368, 400
FauI	CCCGC	1 cut(s)	555
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	3 cut(s)	456, 687, 990
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	630, 749
FokI	GGATG	3 cut(s)	143, 944, 1142
Fsp4HI	GCNGC	2 cut(s)	630, 749
FspBI	CTAG	5 cut(s)	431, 452, 831, 996, 1031
GluI	GCNGC	2 cut(s)	630, 749
GsuI	CTGGAG	2 cut(s)	760, 1145
HaeIII	GGCC	2 cut(s)	766, 1069
HapII	CCGG	1 cut(s)	522
HindIII	AAGCTT	2 cut(s)	402, 787
HinfI	GANTC	3 cut(s)	286, 838, 845
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	4 cut(s)	49, 260, 373, 1072
Hpy166II	GTNNAC	4 cut(s)	68, 381, 777, 1064
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	9 cut(s)	29, 89, 176, 474, 522, 739, 842, 964, 1124
Hpy8I	GTNNAC	4 cut(s)	68, 381, 777, 1064
HpyAV	CCTTC	3 cut(s)	347, 790, 853
HpyCH4III	ACNGT	3 cut(s)	735, 1212, 1220
HpyCH4IV	ACGT	2 cut(s)	625, 1162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 1040, 1270
HpyF3I	CTNAG	4 cut(s)	30, 87, 1183, 1284
HpySE526I	ACGT	2 cut(s)	625, 1162
Kpn2I	TCCGGA	1 cut(s)	521
Ksp22I	TGATCA	3 cut(s)	456, 687, 990
Kzo9I	GATC	4 cut(s)	153, 456, 687, 990
Lsp1109I	GCAGC	2 cut(s)	616, 760
LweI	GCATC	3 cut(s)	922, 945, 1063
MaeI	CTAG	5 cut(s)	431, 452, 831, 996, 1031
MaeII	ACGT	2 cut(s)	625, 1162
MaeIII	GTNAC	3 cut(s)	47, 266, 621
MalI	GATC	4 cut(s)	155, 458, 689, 992
MbiI	CCGCTC	1 cut(s)	638
MboI	GATC	4 cut(s)	153, 456, 687, 990
MboII	GAAGA	5 cut(s)	207, 236, 405, 731, 1064
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	9 cut(s)	77, 141, 182, 186, 258, 809, 870, 982, 1247
MlyI	GAGTC	1 cut(s)	839
MnlI	CCTC	9 cut(s)	25, 344, 715, 830, 922, 1015, 1048, 1120, 1231
MroI	TCCGGA	1 cut(s)	521
MseI	TTAA	4 cut(s)	185, 399, 855, 867
MspA1I	CMGCKG	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	1 cut(s)	522
Mva1269I	GAATGC	2 cut(s)	657, 750
MwoI	GCNNNNNNNGC	3 cut(s)	635, 1040, 1270
NcoI	CCATGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	4 cut(s)	153, 456, 687, 990
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	3 cut(s)	15, 804, 1231
NspV	TTCGAA	1 cut(s)	813
PaeI	GCATGC	1 cut(s)	15
PagI	TCATGA	1 cut(s)	841
PciI	ACATGT	1 cut(s)	1227
PcsI	WCGNNNNNNNCGW	1 cut(s)	631
PctI	GAATGC	2 cut(s)	657, 750
PfeI	GAWTC	2 cut(s)	286, 838
PkrI	GCNGC	2 cut(s)	631, 750
PleI	GAGTC	1 cut(s)	839
PpsI	GAGTC	1 cut(s)	839
Ppu21I	YACGTR	1 cut(s)	626
PscI	ACATGT	1 cut(s)	1227
PshBI	ATTAAT	1 cut(s)	185
Psp1406I	AACGTT	1 cut(s)	1162
PspEI	GGTNACC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	4 cut(s)	25, 489, 805, 1065
RsaNI	GTAC	4 cut(s)	24, 488, 804, 1064
SaqAI	TTAA	4 cut(s)	185, 399, 855, 867
SatI	GCNGC	2 cut(s)	630, 749
Sau3AI	GATC	4 cut(s)	153, 456, 687, 990
Sau96I	GGNCC	1 cut(s)	678
SchI	GAGTC	1 cut(s)	839
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	3 cut(s)	922, 945, 1063
SfcI	CTRYAG	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	813
SinI	GGWCC	1 cut(s)	678
SmlI	CTYRAG	5 cut(s)	134, 174, 472, 821, 854
SmoI	CTYRAG	5 cut(s)	134, 174, 472, 821, 854
SphI	GCATGC	1 cut(s)	15
Sse9I	AATT	9 cut(s)	77, 141, 182, 186, 258, 809, 870, 982, 1247
SsiI	CCGC	4 cut(s)	160, 562, 638, 681
SspMI	CTAG	5 cut(s)	431, 452, 831, 996, 1031
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	735, 1212, 1220
TaiI	ACGT	2 cut(s)	628, 1165
TaqI	TCGA	1 cut(s)	813
TasI	AATT	9 cut(s)	77, 141, 182, 186, 258, 809, 870, 982, 1247
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	286, 838
Tru1I	TTAA	4 cut(s)	185, 399, 855, 867
Tru9I	TTAA	4 cut(s)	185, 399, 855, 867
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	629, 748
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	6 cut(s)	9, 134, 242, 434, 570, 830
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	1 cut(s)	577
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	678
VspI	ATTAAT	1 cut(s)	185
XapI	RAATTY	4 cut(s)	77, 141, 258, 982
XceI	RCATGY	3 cut(s)	15, 804, 1231
XmiI	GTMKAC	1 cut(s)	67
XspI	CTAG	5 cut(s)	431, 452, 831, 996, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.