Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0018332

Physical Location & Seq

Genomic Coordinates Forward (+)

27242053 .. 27244962

Gene Structure 2910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G315700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGATGGTTGCACGCCTTTCATGTACTCCCGAGGTTCTCCCCAAAAGTAAGCTATTCACCGGCTCTAGGGTAACCAAATTCGGTTCTCAGGAAGCTCTCACCTTACTCCAAAATTGCGCCACTTTCAAACATCTCAAGCAAATCCATGCTAAGATTATCCGGAATGGTCTTTCTCACGATCAGTTACTTATCAGGAAACTCATTCACCTTTGCTCTTCTTATGGGAAAATGGACTATGCCAATCTCATATTCCATCAAATCCAAGGCCCCCTTACTTTTACTTGGAATCTAATGATCATGTCCTATACCATCAACGGCTGCTCACAAGAAGCCCTCCTTCTGTATAGCCTTATGATACACCAAGGATTTCCACCCGATAAGTTCACCTTTCCGTTTGTTATCAAAGCTTGCATTGCCTCTTCCGCATTTGAGCAAGGAAAAGTGGTTCATGGGTTATCCATAAAAAATAGTTTCTCCAGAGACATGTTTGTTCAAAATACTTTAATGGACTTCTACTTCAAGTGTGGAGAAATAGATTGTGGATGCAGGGTGTTTGAAAAAATGCGTGTACGAAATGTAGTTTCATGGACAACCATGATTTCGGGGCTAGTTGCTTGTGGGGAATTGCATGCTGCCCGAGCAGTTTTTGAGCGAATGCCAGCTAAAAATGTTGTTTCATGGACAGCAATGATGAATGGGTATGTTAGAAATCAGCAACCTGAAGAGGCTTTTGAGCTGTTCTGGAGAATGCAGGTTGGTGATGTTAGGCCAAACGAATTCACGCTGGTAAGCTTGCTGAAAGCTTGTACCCTATTGGGGAGCCTCAAATTGGGTAGATGGATTCACGACTTTGCTCTTAAAAATGGATTTAAACTTGATGTTTTCCTTGGGACAGCTCTTATTGATACGTATAGCAAATGTGGTAGTTTAGAGGACGCGAGGAGAGTATTTGACGAAATGCGAATCAAGAGCTTGGCTACATGGAATGCAATGATCACAAGCTTGGGTGTACATGGGTTTGGAGAGGAAGCACTTGCCCTTTTCGCAGAGATGGAGAAGGTGAACGTAAGGCCAGATGCAATCACTTTCGTAGGTGTTTTATCTGCTTGTTTGCATACAAATAATCTGGAGGCTGGTTGTATGTATTTCAAATACATGAGTAAACACTATGGTATTACGCCTATTTTAGAACATTACACTTGCATGATTGAACTATATAGCCGTGCTGATATGTTAGATGAGGTATGCAAATTAGCGCAATCCATGCCTGTAAAGCAAAACATATATAAAGCAGAGGATAACGACAATCATCTTTCACTCGTGCAGAGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

445

Amino Acids

50.35

Weight (kDa)

8.62

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26630
prunus_persica	Prupe.3G315700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0176761
rosa_laevigata	RLG00000022444
rosa_roxburghii	Rroxscaffold_2G00076180
rosa_samantha	Rh2AG675900 Rh2BG687000 Rh2CG650400 Rh2DG701300
rosa_wichuraiana	Rw2G055460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	742
AccII	CGCG	1 cut(s)	938
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	1 cut(s)	423
AcsI	RAATTY	2 cut(s)	77, 776
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	4 cut(s)	25, 570, 808, 1011
AfiI	CCNNNNNNNGG	3 cut(s)	66, 816, 829
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	6 cut(s)	127, 494, 520, 557, 1150, 1211
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
Alw26I	GTCTC	1 cut(s)	474
Ama87I	CYCGRG	2 cut(s)	29, 636
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	3 cut(s)	265, 767, 1070
ApeKI	GCWGC	2 cut(s)	318, 632
ApoI	RAATTY	2 cut(s)	77, 776
AspLEI	GCGC	2 cut(s)	119, 1258
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	6 cut(s)	49, 91, 197, 376, 770, 1072
AvaI	CYCGRG	2 cut(s)	29, 636
BauI	CACGAG	1 cut(s)	1319
BbvI	GCAGC	2 cut(s)	305, 619
BccI	CCATC	4 cut(s)	261, 317, 831, 1045
BceAI	ACGGC	2 cut(s)	331, 1206
BclI	TGATCA	2 cut(s)	294, 993
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	66, 608
BfuAI	ACCTGC	1 cut(s)	742
BisI	GCNGC	2 cut(s)	319, 633
BlsI	GCNGC	2 cut(s)	320, 634
BmeT110I	CYCGRG	2 cut(s)	29, 636
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	268, 821
BmsI	GCATC	2 cut(s)	533, 1066
BpmI	CTGGAG	3 cut(s)	460, 763, 1148
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	909
BsaJI	CCNNGG	4 cut(s)	30, 262, 361, 886
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 816, 829
Bse118I	RCCGGY	1 cut(s)	59
Bse3DI	GCAATG	3 cut(s)	411, 693, 996
BseAI	TCCGGA	1 cut(s)	159
BseDI	CCNNGG	4 cut(s)	30, 262, 361, 886
BseGI	GGATG	1 cut(s)	548
BseLI	CCNNNNNNNGG	3 cut(s)	66, 816, 829
BseMI	GCAATG	3 cut(s)	411, 693, 996
BseMII	CTCAG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	955
BseXI	GCAGC	2 cut(s)	305, 619
Bsh1236I	CGCG	1 cut(s)	938
BshFI	GGCC	3 cut(s)	267, 769, 1072
BsiHKCI	CYCGRG	2 cut(s)	29, 636
BsiSI	CCGG	2 cut(s)	60, 160
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	3 cut(s)	66, 816, 829
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	3 cut(s)	660, 753, 991
BsnI	GGCC	3 cut(s)	267, 769, 1072
BsoBI	CYCGRG	2 cut(s)	29, 636
Bsp13I	TCCGGA	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	1009
Bsp143I	GATC	3 cut(s)	178, 294, 993
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	3 cut(s)	267, 769, 1072
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	938
BspLI	GGNNCC	2 cut(s)	268, 821
BspMI	ACCTGC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	220
BsrDI	GCAATG	3 cut(s)	411, 693, 996
BsrFI	RCCGGY	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	1009
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	4 cut(s)	30, 262, 361, 886
BssMI	GATC	3 cut(s)	178, 294, 993
BssSI	CACGAG	1 cut(s)	1319
BssT1I	CCWWGG	3 cut(s)	262, 361, 886
Bst2BI	CACGAG	1 cut(s)	1319
Bst6I	CTCTTC	3 cut(s)	220, 424, 717
BstAPI	GCANNNNNTGC	1 cut(s)	1264
BstAUI	TGTACA	1 cut(s)	1009
BstBAI	YACGTR	1 cut(s)	909
BstC8I	GCNNGC	5 cut(s)	13, 409, 630, 660, 794
BstDEI	CTNAG	2 cut(s)	87, 150
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	548
BstFNI	CGCG	1 cut(s)	938
BstHHI	GCGC	2 cut(s)	119, 1258
BstKTI	GATC	3 cut(s)	181, 297, 996
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	3 cut(s)	178, 294, 993
BstMWI	GCNNNNNNNGC	6 cut(s)	413, 422, 638, 1043, 1264, 1273
BstNSI	RCATGY	2 cut(s)	487, 632
BstPI	GGTNACC	1 cut(s)	70
BstSNI	TACGTA	1 cut(s)	909
BstUI	CGCG	1 cut(s)	938
BstV1I	GCAGC	2 cut(s)	305, 619
BsuRI	GGCC	3 cut(s)	267, 769, 1072
BtsCI	GGATG	1 cut(s)	548
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	5 cut(s)	13, 409, 630, 660, 794
CfoI	GCGC	2 cut(s)	119, 1258
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	4 cut(s)	24, 569, 807, 1010
CviQI	GTAC	4 cut(s)	24, 569, 807, 1010
DdeI	CTNAG	2 cut(s)	87, 150
DpnI	GATC	3 cut(s)	180, 296, 995
DpnII	GATC	3 cut(s)	178, 294, 993
DraI	TTTAAA	1 cut(s)	871
Eam1104I	CTCTTC	3 cut(s)	220, 424, 717
EarI	CTCTTC	3 cut(s)	220, 424, 717
Eco105I	TACGTA	1 cut(s)	909
Eco130I	CCWWGG	3 cut(s)	262, 361, 886
Eco57I	CTGAAG	1 cut(s)	741
Eco88I	CYCGRG	2 cut(s)	29, 636
Eco91I	GGTNACC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	776
EcoT14I	CCWWGG	3 cut(s)	262, 361, 886
ErhI	CCWWGG	3 cut(s)	262, 361, 886
FalI	AAGNNNNNCTT	6 cut(s)	255, 287, 321, 353, 371, 403
FaqI	GGGAC	1 cut(s)	904
FbaI	TGATCA	2 cut(s)	294, 993
Fnu4HI	GCNGC	2 cut(s)	319, 633
FokI	GGATG	1 cut(s)	555
Fsp4HI	GCNGC	2 cut(s)	319, 633
FspBI	CTAG	2 cut(s)	66, 608
GlaI	GCGC	2 cut(s)	118, 1257
GluI	GCNGC	2 cut(s)	319, 633
GsuI	CTGGAG	3 cut(s)	460, 763, 1148
HaeIII	GGCC	3 cut(s)	267, 769, 1072
HapII	CCGG	2 cut(s)	60, 160
HgaI	GACGC	1 cut(s)	944
HhaI	GCGC	2 cut(s)	119, 1258
Hin6I	GCGC	2 cut(s)	117, 1256
HinP1I	GCGC	2 cut(s)	117, 1256
HindIII	AAGCTT	4 cut(s)	405, 790, 801, 1000
HinfI	GANTC	3 cut(s)	286, 841, 963
HpaII	CCGG	2 cut(s)	60, 160
HphI	GGTGA	6 cut(s)	49, 91, 197, 376, 770, 1072
Hpy166II	GTNNAC	5 cut(s)	384, 569, 1010, 1063, 1163
Hpy8I	GTNNAC	5 cut(s)	384, 569, 1010, 1063, 1163
HpyAV	CCTTC	2 cut(s)	347, 1051
HpyCH4IV	ACGT	2 cut(s)	908, 1065
HpyF10VI	GCNNNNNNNGC	6 cut(s)	413, 422, 638, 1043, 1264, 1273
HpyF3I	CTNAG	2 cut(s)	87, 150
HpySE526I	ACGT	2 cut(s)	908, 1065
HspAI	GCGC	2 cut(s)	117, 1256
Kpn2I	TCCGGA	1 cut(s)	159
Ksp22I	TGATCA	2 cut(s)	294, 993
Kzo9I	GATC	3 cut(s)	178, 294, 993
LguI	GCTCTTC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	819
Lsp1109I	GCAGC	2 cut(s)	305, 619
LweI	GCATC	2 cut(s)	533, 1066
MaeI	CTAG	2 cut(s)	66, 608
MaeII	ACGT	2 cut(s)	908, 1065
MaeIII	GTNAC	2 cut(s)	70, 183
MalI	GATC	3 cut(s)	180, 296, 995
MboI	GATC	3 cut(s)	178, 294, 993
MboII	GAAGA	3 cut(s)	207, 411, 734
MluCI	AATT	6 cut(s)	77, 112, 623, 776, 827, 1250
MroI	TCCGGA	1 cut(s)	159
MseI	TTAA	3 cut(s)	503, 858, 870
MslI	CAYNNNNRTG	1 cut(s)	1202
MspI	CCGG	2 cut(s)	60, 160
Mva1269I	GAATGC	3 cut(s)	660, 753, 991
MvnI	CGCG	1 cut(s)	938
MwoI	GCNNNNNNNGC	6 cut(s)	413, 422, 638, 1043, 1264, 1273
NdeII	GATC	3 cut(s)	178, 294, 993
NlaIV	GGNNCC	2 cut(s)	268, 821
NspI	RCATGY	2 cut(s)	487, 632
PaeI	GCATGC	1 cut(s)	632
PciI	ACATGT	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	220
PctI	GAATGC	3 cut(s)	660, 753, 991
PfeI	GAWTC	3 cut(s)	286, 841, 963
PkrI	GCNGC	2 cut(s)	320, 634
Ppu21I	YACGTR	1 cut(s)	909
PscI	ACATGT	1 cut(s)	483
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	268, 821
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	4 cut(s)	25, 570, 808, 1011
RsaNI	GTAC	4 cut(s)	24, 569, 807, 1010
RseI	CAYNNNNRTG	1 cut(s)	1202
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	503, 858, 870
SatI	GCNGC	2 cut(s)	319, 633
Sau3AI	GATC	3 cut(s)	178, 294, 993
Sau96I	GGNCC	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	533, 1066
SmiMI	CAYNNNNRTG	1 cut(s)	1202
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SnaBI	TACGTA	1 cut(s)	909
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	6 cut(s)	77, 112, 623, 776, 827, 1250
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	2 cut(s)	66, 608
StyI	CCWWGG	3 cut(s)	262, 361, 886
TaiI	ACGT	2 cut(s)	911, 1068
TasI	AATT	6 cut(s)	77, 112, 623, 776, 827, 1250
TatI	WGTACW	2 cut(s)	23, 1009
TfiI	GAWTC	3 cut(s)	286, 841, 963
Tru1I	TTAA	3 cut(s)	503, 858, 870
Tru9I	TTAA	3 cut(s)	503, 858, 870
TseI	GCWGC	2 cut(s)	318, 632
TspDTI	ATGAA	5 cut(s)	9, 437, 573, 666, 707
TspGWI	ACGGA	1 cut(s)	381
XapI	RAATTY	2 cut(s)	77, 776
XceI	RCATGY	2 cut(s)	487, 632
XspI	CTAG	2 cut(s)	66, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.