AT3G27030

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0019561
Physical Location & Seq
Reverse (-)
9972508 .. 9974225
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27030.1

Sequence Viewer

Length: 429 bp
ATGCCTGATTGGGGACCGGTTTTTGTCGCGGTGACGCTTTTTGTGTTGCTGACTCCGGGACTGCTGATTCAAGTTCCTGGGAGAGGTCGAGTGGTTGAGTTTGGAACGTTTCAGACAAGTGGTCTCTCGGTTATTGTTCATACTCTTATTTACTTCACTCTTGTTTGTATTCTCTTGCTTGCTCTCCAAATTCACATTTGTAACCTTTTTTCTACTTCAATGGCGGATTGGGCTCCAGTTCTCGTCGGCGTGGTCCTGTTCGTGATTCTCTCACCGGGACTTCTCTTCTCATTACCTGGTAACAACCGCACCGTAGATTTCGGTGGCCTCAAAACCAACGGCAAAGCCATCGCTGTTCACACTCTCATCTTCTTCGCCATTTACACCATTTTAATCCTCGCCCTCAATCTCCACATCTACACTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

142

Amino Acids

15.38

Weight (kDa)

7.86

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 66 1.1e-31 Protein of unknown function (DUF3339)
DUF3339 PF11820 74 - 140 2e-31 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27030
prunus_persica Prupe.3G307400_v2.0.a1
pyrus_communis pycom111g00770
rosa_chinensis RchiOBHm_Chr2g0175791
rosa_roxburghii Rroxscaffold_2G00077020
rosa_rugosa Rorug02G0587700
rosa_wichuraiana Rw2G054670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 29, 224, 307
AclI AACGTT 1 cut(s) 107
AcsI RAATTY 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 11, 83
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 2 cut(s) 71, 219
AhdI GACNNNNNGTC 1 cut(s) 120
AjnI CCWGG 2 cut(s) 76, 295
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 189
AsiGI ACCGGT 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 14, 253
AsuC2I CCSGG 2 cut(s) 57, 276
AsuHPI GGTGA 2 cut(s) 43, 264
AvaII GGWCC 2 cut(s) 14, 253
BanII GRGCYC 1 cut(s) 235
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 2 cut(s) 78, 297
BcnI CCSGG 2 cut(s) 57, 276
BcoDI GTCTC 1 cut(s) 128
Bme1390I CCNGG 4 cut(s) 57, 78, 276, 297
Bme18I GGWCC 2 cut(s) 14, 253
BmeRI GACNNNNNGTC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 14, 253
BmiI GGNNCC 2 cut(s) 15, 234
BmrFI CCNGG 4 cut(s) 57, 78, 276, 297
BpmI CTGGAG 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 57, 276
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 83
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 236, 427
BseBI CCWGG 2 cut(s) 78, 297
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 11, 83
BseNI ACTGG 2 cut(s) 236, 427
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 327
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 3 cut(s) 17, 56, 275
BslFI GGGAC 3 cut(s) 27, 72, 291
BslI CCNNNNNNNGG 2 cut(s) 11, 83
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 3 cut(s) 27, 72, 291
BsnI GGCC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 235
BspACI CCGC 3 cut(s) 29, 224, 307
BspANI GGCC 1 cut(s) 327
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 15, 234
BspTNI GGTCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 236, 427
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 77
Bst2UI CCWGG 2 cut(s) 78, 297
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 180
BstENI CCTNNNNNAGG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 2 cut(s) 78, 297
BstSCI CCNGG 4 cut(s) 55, 76, 274, 295
BstUI CGCG 1 cut(s) 29
BsuRI GGCC 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 14, 253
CseI GACGC 1 cut(s) 43
CsiI ACCWGGT 1 cut(s) 295
CspAI ACCGGT 1 cut(s) 16
CviJI RGCY 4 cut(s) 233, 327, 347, 426
CviKI_1 RGCY 4 cut(s) 233, 327, 347, 426
DriI GACNNNNNGTC 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 290
Eam1105I GACNNNNNGTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 14, 253
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 76, 295
EcoT38I GRGCYC 1 cut(s) 235
FaiI YATR 1 cut(s) 141
FaqI GGGAC 3 cut(s) 27, 72, 291
FriOI GRGCYC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 327
HapII CCGG 3 cut(s) 17, 56, 275
HgaI GACGC 1 cut(s) 43
HinfI GANTC 3 cut(s) 52, 67, 265
HpaII CCGG 3 cut(s) 17, 56, 275
HphI GGTGA 2 cut(s) 43, 264
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 107
LmnI GCTCC 1 cut(s) 238
MabI ACCWGGT 1 cut(s) 295
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 31, 200, 299
MboII GAAGA 3 cut(s) 277, 361, 364
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 4 cut(s) 77, 338, 407, 413
MseI TTAA 1 cut(s) 392
MspI CCGG 3 cut(s) 17, 56, 275
MspR9I CCNGG 4 cut(s) 57, 78, 276, 297
MvaI CCWGG 2 cut(s) 78, 297
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 230
NciI CCSGG 2 cut(s) 57, 276
NlaIV GGNNCC 2 cut(s) 15, 234
NmuCI GTSAC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 67, 265
PfoI TCCNGGA 1 cut(s) 55
PinAI ACCGGT 1 cut(s) 16
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp1406I AACGTT 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 76, 295
PspGI CCWGG 2 cut(s) 76, 295
PspN4I GGNNCC 2 cut(s) 15, 234
PspPI GGNCC 2 cut(s) 14, 253
SaqAI TTAA 1 cut(s) 392
Sau96I GGNCC 2 cut(s) 14, 253
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 4 cut(s) 57, 78, 276, 297
SduI GDGCHC 1 cut(s) 235
SetI ASST 4 cut(s) 88, 110, 207, 298
SexAI ACCWGGT 1 cut(s) 295
SinI GGWCC 2 cut(s) 14, 253
Sse9I AATT 1 cut(s) 189
SsiI CCGC 3 cut(s) 29, 224, 307
StyD4I CCNGG 4 cut(s) 55, 76, 274, 295
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 88
TasI AATT 1 cut(s) 189
TfiI GAWTC 2 cut(s) 67, 265
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 427
VpaK11BI GGWCC 2 cut(s) 14, 253
XagI CCTNNNNNAGG 1 cut(s) 81
XapI RAATTY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.