Prupe.3G307400_v2.0.a1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0019561
Physical Location & Seq
Forward (+)
26824232 .. 26826724
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G307400.1

Sequence Viewer

Length: 420 bp
ATGTCGGATTGGGGGCCGGTTTTCATAGCAGTGGTGCTGTTTATACTGCTCACTCCAGGGTTGCTGATTCAGATGCCTGGAAAAAGCCGATTCGTAGAGTTTGGCAACTTTCAGACTAGTGGAATCTCCATACTGGTTCATTCCATTATCTACTTTGCTCTCATCTGCATCTTCTTATTAGCTATTGGTGTCCACATGTATGAAATAATAATGGCGGATTGGGGGCCCATATTGATTGGGGTGGTGCTGTTCATTCTTCTGCAACCGGGACTTCTCTTCTCGTTACCGGGAAACAGTAGGCAGGTGGAGTTTGGGAGCATGAAGACGAATGGCAAGGCCATAGCTGTGCACACTCTCATCTTTTTCGCTCTCTATGCCATTCTCATCTTGGCCGTCCACGTCCACATCTATACTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

140

Amino Acids

15.31

Weight (kDa)

6.96

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27030
prunus_persica Prupe.3G307400_v2.0.a1
pyrus_communis pycom111g00770
rosa_chinensis RchiOBHm_Chr2g0175791
rosa_roxburghii Rroxscaffold_2G00077020
rosa_rugosa Rorug02G0587700
rosa_wichuraiana Rw2G054670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 1 cut(s) 292
AciI CCGC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 390
AflIII ACRYGT 1 cut(s) 195
AhlI ACTAGT 1 cut(s) 116
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 2 cut(s) 55, 76
AluBI AGCT 2 cut(s) 182, 344
AluI AGCT 2 cut(s) 182, 344
Alw21I GWGCWC 1 cut(s) 351
Alw44I GTGCAC 1 cut(s) 347
AoxI GGCC 4 cut(s) 14, 224, 336, 390
ApaI GGGCCC 1 cut(s) 228
ApaLI GTGCAC 1 cut(s) 347
AspS9I GGNCC 3 cut(s) 14, 224, 225
AsuC2I CCSGG 2 cut(s) 267, 288
BaeGI GKGCMC 2 cut(s) 228, 351
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 351
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 57, 78
BcnI CCSGG 2 cut(s) 267, 288
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 292
Bme1390I CCNGG 4 cut(s) 57, 78, 267, 288
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 14, 224, 225
BmiI GGNNCC 3 cut(s) 15, 225, 226
BmrFI CCNGG 4 cut(s) 57, 78, 267, 288
BmsI GCATC 2 cut(s) 63, 177
BpiI GAAGAC 1 cut(s) 329
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 267, 288
BsaJI CCNNGG 1 cut(s) 56
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 138, 418
BseBI CCWGG 2 cut(s) 57, 78
BseDI CCNNGG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 138, 418
BseSI GKGCMC 2 cut(s) 228, 351
BshFI GGCC 4 cut(s) 16, 226, 338, 392
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 3 cut(s) 17, 266, 287
BslFI GGGAC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 4 cut(s) 16, 226, 338, 392
Bsp120I GGGCCC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 228, 351
BspACI CCGC 1 cut(s) 215
BspANI GGCC 4 cut(s) 16, 226, 338, 392
BspLI GGNNCC 3 cut(s) 15, 225, 226
BspMI ACCTGC 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 138, 418
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 57, 78
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 281
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 2 cut(s) 57, 78
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 4 cut(s) 55, 76, 265, 286
BstSLI GKGCMC 2 cut(s) 228, 351
BstV2I GAAGAC 1 cut(s) 329
BsuRI GGCC 4 cut(s) 16, 226, 338, 392
BtrI CACGTC 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 14, 224, 225
CviAII CATG 2 cut(s) 196, 319
CviJI RGCY 8 cut(s) 16, 87, 182, 226, 338, 344, 392, 417
CviKI_1 RGCY 8 cut(s) 16, 87, 182, 226, 338, 344, 392, 417
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
EciI GGCGGA 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 55, 76
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 2 cut(s) 199, 322
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 195, 318
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 4 cut(s) 16, 226, 338, 392
HapII CCGG 3 cut(s) 17, 266, 287
Hin1II CATG 2 cut(s) 199, 322
HinfI GANTC 3 cut(s) 67, 90, 123
HpaII CCGG 3 cut(s) 17, 266, 287
Hpy166II GTNNAC 4 cut(s) 193, 349, 397, 403
Hpy188I TCNGA 3 cut(s) 7, 72, 114
Hpy8I GTNNAC 4 cut(s) 193, 349, 397, 403
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 168, 262, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 199, 322
LmnI GCTCC 1 cut(s) 315
LweI GCATC 2 cut(s) 63, 177
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 282
MboII GAAGA 4 cut(s) 163, 248, 268, 334
MhlI GDGCHC 2 cut(s) 228, 351
MslI CAYNNNNRTG 3 cut(s) 29, 198, 344
MspI CCGG 3 cut(s) 17, 266, 287
MspR9I CCNGG 4 cut(s) 57, 78, 267, 288
MvaI CCWGG 2 cut(s) 57, 78
MwoI GCNNNNNNNGC 1 cut(s) 374
NciI CCSGG 2 cut(s) 267, 288
NlaIII CATG 2 cut(s) 199, 322
NlaIV GGNNCC 3 cut(s) 15, 225, 226
NspI RCATGY 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 292
PciI ACATGT 1 cut(s) 195
PfeI GAWTC 3 cut(s) 67, 90, 123
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 55, 76
PspGI CCWGG 2 cut(s) 55, 76
PspN4I GGNNCC 3 cut(s) 15, 225, 226
PspOMI GGGCCC 1 cut(s) 224
PspPI GGNCC 3 cut(s) 14, 224, 225
RseI CAYNNNNRTG 3 cut(s) 29, 198, 344
Sau96I GGNCC 3 cut(s) 14, 224, 225
ScrFI CCNGG 4 cut(s) 57, 78, 267, 288
SduI GDGCHC 2 cut(s) 228, 351
SetI ASST 4 cut(s) 184, 306, 346, 402
SfaNI GCATC 2 cut(s) 63, 177
SmiMI CAYNNNNRTG 3 cut(s) 29, 198, 344
SpeI ACTAGT 1 cut(s) 116
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 4 cut(s) 55, 76, 265, 286
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 402
TfiI GAWTC 3 cut(s) 67, 90, 123
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 5 cut(s) 13, 128, 216, 241, 335
TspRI CASTG 1 cut(s) 36
VneI GTGCAC 1 cut(s) 347
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 2 cut(s) 385, 410
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.