pycom111g00770

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0019561
Physical Location & Seq
Reverse (-)
534551 .. 534763
213 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00770.1

Sequence Viewer

Length: 213 bp
ATGTCGGATTGGGGGCCGGTTTTCATAGCAGTGCTTTTGTTTGTACTGCTGACACCAGGACTGCTGATTCAGATGCCGGGAAAGAGCCGGTTCGTGGAGTTCGGAAACTTTCAGACGAGTGGAGTGTCCATACTGGTTCATTCCATAATCTACTTTGCTCTCATTTGCATCTTCTTATTAGCTATTGGTGTCCACATGTATTTTGGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

71

Amino Acids

7.74

Weight (kDa)

6.69

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 9.6e-36 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27030
prunus_persica Prupe.3G307400_v2.0.a1
pyrus_communis pycom111g00770
rosa_chinensis RchiOBHm_Chr2g0175791
rosa_roxburghii Rroxscaffold_2G00077020
rosa_rugosa Rorug02G0587700
rosa_wichuraiana Rw2G054670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 195
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AoxI GGCC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 57, 78
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 57, 78
BmsI GCATC 2 cut(s) 63, 177
BpuMI CCSGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 2 cut(s) 16, 87
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 138
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 3 cut(s) 17, 77, 88
BslI CCNNNNNNNGG 1 cut(s) 94
BsnI GGCC 1 cut(s) 16
BspANI GGCC 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 15
BsrFI RCCGGY 2 cut(s) 16, 87
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 2 cut(s) 16, 87
Bst2UI CCWGG 1 cut(s) 57
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 55, 76
BsuRI GGCC 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cfr10I RCCGGY 2 cut(s) 16, 87
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 196
CviJI RGCY 4 cut(s) 16, 87, 182, 207
CviKI_1 RGCY 4 cut(s) 16, 87, 182, 207
CviQI GTAC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 26, 131, 146, 197
FatI CATG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 16
HapII CCGG 3 cut(s) 17, 77, 88
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 67
HpaII CCGG 3 cut(s) 17, 77, 88
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 7, 72, 104, 114
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 168
Hsp92II CATG 1 cut(s) 199
LpnPI CCDG 6 cut(s) 30, 42, 69, 90, 101, 119
LweI GCATC 2 cut(s) 63, 177
MboII GAAGA 1 cut(s) 163
MseI TTAA 1 cut(s) 211
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 3 cut(s) 17, 77, 88
MspR9I CCNGG 2 cut(s) 57, 78
MvaI CCWGG 1 cut(s) 57
NciI CCSGG 1 cut(s) 78
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 1 cut(s) 199
PciI ACATGT 1 cut(s) 195
PfeI GAWTC 1 cut(s) 67
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 14
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 57, 78
SetI ASST 1 cut(s) 184
SfaNI GCATC 2 cut(s) 63, 177
SmiMI CAYNNNNRTG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 55, 76
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 211
Tru9I TTAA 1 cut(s) 211
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 13, 128
TspRI CASTG 1 cut(s) 36
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.