Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0019561

Physical Location & Seq

Genomic Coordinates Forward (+)

71023050 .. 71024577

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0587700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGTTTCCTCTGTTAAGGTACCAAAGCCTAGCGTTGGACCAGATTCAATGTAGCATTAGCTTCCCTTTGTCATTCTCAGATTCCAAGTTTTCCAAGCAGAGATTTTTGTTTTCTGGCTACTCTTTTTCCCTAAATAGACCAAAATGGAGGAGCCCATTTTCCCAAATTAGGTGTTGTTCATACGTGGAGCAACAGCTGAAGCCCCGGCCCAGGCCCATACCTGCTAAAATTGAGGTTGAGGAGGAACCAAAGGTCGCACCTTTGGAACCAGAAGAGGCCCAGATTGCAGTACCCAGTTCTGGGATTTGTAGTCAGATTGAGAAGTTGGTTTTGTATAAGAGCTTGAAATCAATTAGAGGAGTGAAGAGGGTGTTTGGTTATATGATTGGTAATGAGTTTGAGTTGAATCAATATATGAGGAACCGGGTTTTGCTTATGCATGTGAAATGTGGGATGATGATTGATTCATGCCACCTGTTTGAGGAAATGCCTGAGAGAAATTTGGTTTCGTGGAACACGATAATTGGGGGTCTTGTGGATTGTGGAGAGTTCATGAAGGTGTTTGGGTTGTTTTTGGATATGTGGGAGGAGTTTTCTTACGGGGAGTCGAGGATATTTGCCGCAATGATTCGGGCTTCGGCTGGTTTGGGACTCATTTTTGCAGGGAGACAGTTTCATTCGTGTTGTGTGAAGATGGGTGTGGTAGCTGATATTTTTGTGTCTTATGCGTTGATTGATATGTATAGCAAGTGTGGGAGCATTGATGATGCTCACTGTGTTTTTAATGAGATGCCGAAGAAGACAACTGTAGGATGGAATACGATCATAGCTAGTTATGCACTTCATGGTTACAACGAGGAGTGTTTGAGTATGTACTATGATATGCGTGATTCTGGTATGTCGATGGACCATTTTACGTTTTCCATGATCATAAGAACATGTGCAAGGTTGGCCTCGTTGGAACATGCTAAGCAAGCTCATGCAGGTTTATCAGAACGTGGATGGGAGGTTTTTGAATCAATGAGCAGGGACTACAAGATTAAGCCCTCGGCTATGCATTATGCTTGTATGATTGAATTGCTAGGACAAGAGGGGAATTTAGATGAAACCTTTGCACTAATAAGAACTGCTTCCATTACGCCTACAACAAACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3339

Protein Analysis

386

Amino Acids

44.01

Weight (kDa)

6.33

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	269 - 317	7.9e-10	PPR repeat family
PPR_long	PF17177	289 - 377	7.9e-06	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27030
prunus_persica	Prupe.3G307400_v2.0.a1
pyrus_communis	pycom111g00770
rosa_chinensis	RchiOBHm_Chr2g0175791
rosa_roxburghii	Rroxscaffold_2G00077020
rosa_rugosa	Rorug02G0587700
rosa_wichuraiana	Rw2G054670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	232, 977
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	21
AciI	CCGC	1 cut(s)	624
AcsI	RAATTY	2 cut(s)	502, 1099
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	3 cut(s)	23, 294, 878
AfiI	CCNNNNNNNGG	6 cut(s)	37, 171, 213, 302, 303, 484
AflIII	ACRYGT	2 cut(s)	941, 1155
AgsI	TTSAA	5 cut(s)	50, 349, 409, 1019, 1079
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	6 cut(s)	63, 199, 345, 710, 833, 980
AluI	AGCT	6 cut(s)	63, 199, 345, 710, 833, 980
Alw26I	GTCTC	1 cut(s)	664
AoxI	GGCC	4 cut(s)	209, 215, 279, 954
ApoI	RAATTY	2 cut(s)	502, 1099
Asp700I	GAANNNNTTC	1 cut(s)	1132
Asp718I	GGTACC	1 cut(s)	21
AspS9I	GGNCC	5 cut(s)	40, 210, 216, 280, 910
AsuC2I	CCSGG	2 cut(s)	208, 428
AvaII	GGWCC	2 cut(s)	40, 910
BanI	GGYRCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	809
BccI	CCATC	4 cut(s)	691, 810, 901, 999
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	1 cut(s)	930
BcnI	CCSGG	2 cut(s)	208, 428
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	3 cut(s)	32, 834, 1085
BfmI	CTRYAG	1 cut(s)	810
BfuAI	ACCTGC	2 cut(s)	232, 977
BisI	GCNGC	1 cut(s)	624
BlpI	GCTNAGC	1 cut(s)	972
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	3 cut(s)	208, 214, 428
Bme18I	GGWCC	2 cut(s)	40, 910
BmgT120I	GGNCC	5 cut(s)	40, 210, 216, 280, 910
BmiI	GGNNCC	5 cut(s)	23, 155, 249, 270, 425
BmrFI	CCNGG	3 cut(s)	208, 214, 428
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	760, 783
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	809
Bpu1102I	GCTNAGC	1 cut(s)	972
BpuMI	CCSGG	2 cut(s)	208, 428
BsaAI	YACGTR	2 cut(s)	187, 1158
BsaJI	CCNNGG	3 cut(s)	206, 212, 1050
Bsc4I	CCNNNNNNNGG	6 cut(s)	37, 171, 213, 302, 303, 484
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	206, 212, 1050
BseGI	GGATG	3 cut(s)	462, 821, 1010
BseLI	CCNNNNNNNGG	6 cut(s)	37, 171, 213, 302, 303, 484
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	2 cut(s)	93, 486
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	5 cut(s)	166, 257, 375, 605, 875
BshFI	GGCC	4 cut(s)	211, 217, 281, 956
BshNI	GGYRCC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	208, 427
BslFI	GGGAC	2 cut(s)	666, 1046
BslI	CCNNNNNNNGG	6 cut(s)	37, 171, 213, 302, 303, 484
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	2 cut(s)	666, 1046
BsnI	GGCC	4 cut(s)	211, 217, 281, 956
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	825, 930
Bsp1720I	GCTNAGC	1 cut(s)	972
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	4 cut(s)	211, 217, 281, 956
BspCNI	CTCAG	2 cut(s)	92, 487
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	5 cut(s)	23, 155, 249, 270, 425
BspMI	ACCTGC	2 cut(s)	232, 977
BspT107I	GGYRCC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	206, 212, 1050
BssMI	GATC	2 cut(s)	825, 930
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	3 cut(s)	675, 779, 811
Bst6I	CTCTTC	2 cut(s)	270, 362
BstBAI	YACGTR	2 cut(s)	187, 1158
BstC8I	GCNNGC	1 cut(s)	978
BstDEI	CTNAG	3 cut(s)	79, 495, 972
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	462, 821, 1010
BstKTI	GATC	2 cut(s)	828, 933
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	2 cut(s)	825, 930
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 839, 953, 977
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	3 cut(s)	446, 945, 971
BstSCI	CCNGG	3 cut(s)	206, 212, 426
BstSFI	CTRYAG	1 cut(s)	810
BstV2I	GAAGAC	1 cut(s)	809
BsuRI	GGCC	4 cut(s)	211, 217, 281, 956
BtsCI	GGATG	3 cut(s)	462, 821, 1010
BtsIMutI	CAGTG	1 cut(s)	775
BveI	ACCTGC	2 cut(s)	232, 977
Cac8I	GCNNGC	1 cut(s)	978
CciI	TCATGA	1 cut(s)	555
Cfr13I	GGNCC	5 cut(s)	40, 210, 216, 280, 910
Csp6I	GTAC	3 cut(s)	22, 293, 877
CviAII	CATG	8 cut(s)	443, 471, 556, 848, 928, 942, 968, 983
CviQI	GTAC	3 cut(s)	22, 293, 877
DdeI	CTNAG	3 cut(s)	79, 495, 972
DpnI	GATC	2 cut(s)	827, 932
DpnII	GATC	2 cut(s)	825, 930
Eam1104I	CTCTTC	2 cut(s)	270, 362
EarI	CTCTTC	2 cut(s)	270, 362
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	40, 910
Eco57I	CTGAAG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	212
EcoT22I	ATGCAT	2 cut(s)	444, 1062
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	8 cut(s)	446, 474, 559, 851, 931, 945, 971, 986
FalI	AAGNNNNNCTT	2 cut(s)	1117, 1149
FaqI	GGGAC	2 cut(s)	666, 1046
FatI	CATG	8 cut(s)	442, 470, 555, 847, 927, 941, 967, 982
FbaI	TGATCA	1 cut(s)	930
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	3 cut(s)	469, 828, 1017
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	3 cut(s)	32, 834, 1085
GluI	GCNGC	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	211, 217, 281, 956
HapII	CCGG	2 cut(s)	208, 427
Hin1II	CATG	8 cut(s)	446, 474, 559, 851, 931, 945, 971, 986
HinfI	GANTC	9 cut(s)	46, 83, 409, 467, 608, 631, 654, 893, 1019
HpaII	CCGG	2 cut(s)	208, 427
Hpy188I	TCNGA	3 cut(s)	82, 318, 997
Hpy188III	TCNNGA	1 cut(s)	556
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	3 cut(s)	675, 779, 811
HpyCH4IV	ACGT	4 cut(s)	186, 920, 1000, 1157
HpyCH4V	TGCA	8 cut(s)	290, 442, 665, 842, 947, 986, 1060, 1118
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 839, 953, 977
HpyF3I	CTNAG	3 cut(s)	79, 495, 972
HpySE526I	ACGT	4 cut(s)	186, 920, 1000, 1157
Hsp92II	CATG	8 cut(s)	446, 474, 559, 851, 931, 945, 971, 986
KpnI	GGTACC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	930
Kzo9I	GATC	2 cut(s)	825, 930
LmnI	GCTCC	3 cut(s)	153, 190, 759
LweI	GCATC	2 cut(s)	760, 783
MaeI	CTAG	3 cut(s)	32, 834, 1085
MaeII	ACGT	4 cut(s)	186, 920, 1000, 1157
MaeIII	GTNAC	1 cut(s)	851
MalI	GATC	2 cut(s)	827, 932
MboI	GATC	2 cut(s)	825, 930
MboII	GAAGA	5 cut(s)	287, 379, 706, 811, 814
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	7 cut(s)	168, 231, 354, 502, 525, 1079, 1099
MlyI	GAGTC	2 cut(s)	617, 648
MmeI	TCCRAC	2 cut(s)	18, 942
Mph1103I	ATGCAT	2 cut(s)	444, 1062
MroXI	GAANNNNTTC	1 cut(s)	1132
MseI	TTAA	3 cut(s)	17, 786, 1044
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	208, 427
MspR9I	CCNGG	3 cut(s)	208, 214, 428
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	4 cut(s)	287, 839, 953, 977
NciI	CCSGG	2 cut(s)	208, 428
NdeII	GATC	2 cut(s)	825, 930
NlaIII	CATG	8 cut(s)	446, 474, 559, 851, 931, 945, 971, 986
NlaIV	GGNNCC	5 cut(s)	23, 155, 249, 270, 425
NmeAIII	GCCGAG	1 cut(s)	1031
NsiI	ATGCAT	2 cut(s)	444, 1062
NspI	RCATGY	3 cut(s)	446, 945, 971
PagI	TCATGA	1 cut(s)	555
PciI	ACATGT	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	1132
PfeI	GAWTC	7 cut(s)	46, 83, 409, 467, 631, 893, 1019
PkrI	GCNGC	1 cut(s)	625
PleI	GAGTC	2 cut(s)	616, 648
PpsI	GAGTC	2 cut(s)	616, 648
Ppu21I	YACGTR	2 cut(s)	187, 1158
PscI	ACATGT	1 cut(s)	941
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	5 cut(s)	23, 155, 249, 270, 425
PspPI	GGNCC	5 cut(s)	40, 210, 216, 280, 910
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	23, 294, 878
RsaNI	GTAC	3 cut(s)	22, 293, 877
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	3 cut(s)	17, 786, 1044
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	2 cut(s)	825, 930
Sau96I	GGNCC	5 cut(s)	40, 210, 216, 280, 910
SchI	GAGTC	2 cut(s)	617, 648
ScrFI	CCNGG	3 cut(s)	208, 214, 428
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	2 cut(s)	760, 783
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	2 cut(s)	40, 910
SmiMI	CAYNNNNRTG	1 cut(s)	560
Sse9I	AATT	7 cut(s)	168, 231, 354, 502, 525, 1079, 1099
SsiI	CCGC	1 cut(s)	624
SspMI	CTAG	3 cut(s)	32, 834, 1085
StyD4I	CCNGG	3 cut(s)	206, 212, 426
TaaI	ACNGT	3 cut(s)	675, 779, 811
TaiI	ACGT	4 cut(s)	189, 923, 1003, 1160
TaqI	TCGA	2 cut(s)	611, 905
TasI	AATT	7 cut(s)	168, 231, 354, 502, 525, 1079, 1099
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	7 cut(s)	46, 83, 409, 467, 631, 893, 1019
Tru1I	TTAA	3 cut(s)	17, 786, 1044
Tru9I	TTAA	3 cut(s)	17, 786, 1044
TscAI	CASTG	1 cut(s)	782
TspDTI	ATGAA	7 cut(s)	171, 459, 544, 572, 668, 836, 1122
TspRI	CASTG	1 cut(s)	782
VpaK11BI	GGWCC	2 cut(s)	40, 910
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	2 cut(s)	502, 1099
XceI	RCATGY	3 cut(s)	446, 945, 971
XmnI	GAANNNNTTC	1 cut(s)	1132
XspI	CTAG	3 cut(s)	32, 834, 1085
Zsp2I	ATGCAT	2 cut(s)	444, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.