AT3G28040

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016035
Physical Location & Seq
Forward (+)
10434924 .. 10438484
3561 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28040.1

Sequence Viewer

Length: 3051 bp
ATGGGCAAACAGAGAAGAACCATGATCTCATTTACTCTGTTTCTCACATTGACAATGATGTCATCACTCATCAATGGCGATACCGACTCAATTCAACTAAACGACGACGTTTTAGGACTCATCGTCTTCAAATCAGACCTCAACGACCCATTTTCACACCTTGAGTCATGGACCGAAGACGACAACACTCCTTGTTCATGGAGTTACGTCAAATGCAACCCCAAAACATCTCGAGTCATCGAGCTTTCTCTCGACGGTTTAGCCTTAACCGGAAAAATCAACCGCGGAATCCAAAAGCTTCAACGTTTAAAAGTACTCTCACTTTCCAACAACAACTTCACCGGAAACATCAACGCTCTCTCAAACAACAACCATCTCCAAAAGCTAGATCTTAGCCACAACAATCTCTCCGGTCAAATCCCTTCTTCTCTCGGTTCAATAACCTCCTTGCAACACCTTGACTTAACCGGAAACTCCTTCTCCGGTACACTCTCTGACGATTTGTTCAACAACTGTTCCTCTCTTAGATATCTTTCTCTCTCCCACAACCACCTCGAAGGTCAAATCCCAAGTACTCTGTTTCGATGCTCTGTTTTAAACAGTCTCAATCTTTCAAGAAACCGTTTCTCCGGTAACCCTAGCTTCGTCTCAGGAATCTGGAGACTTGAGAGGTTAAGAGCTTTAGATCTATCTTCTAACTCACTTTCTGGTTCAATACCTTTGGGGATACTCTCTCTACATAACTTGAAAGAGTTGCAACTACAGAGGAATCAGTTCTCTGGAGCATTGCCTTCAGATATTGGACTCTGTCCTCATTTAAACAGAGTTGATCTAAGTTCCAATCATTTCTCTGGTGAACTTCCAAGAACTCTTCAGAAGCTGAAATCTTTAAATCACTTCGATGTATCGAACAATTTGCTCTCCGGTGATTTCCCGCCATGGATCGGTGACATGACCGGTTTAGTACACTTGGATTTCTCCAGCAATGAGTTAACCGGAAAGCTTCCTTCTTCTATTAGTAACTTGAGGTCTCTAAAGGATCTAAACTTGTCTGAGAACAAACTCTCCGGCGAGGTACCTGAGTCTTTGGAATCATGCAAAGAGCTTATGATTGTTCAGCTTAAAGGCAATGACTTCTCCGGTAACATTCCTGATGGTTTTTTTGATCTTGGTCTTCAAGAAATGGATTTTTCGGGTAACGGTTTAACCGGTTCGATCCCAAGAGGCTCAAGCAGGCTTTTCGAGTCACTCATAAGGCTCGATCTTTCGCATAACAGTCTCACTGGAAGTATACCTGGTGAAGTAGGACTCTTCATCCACATGAGATACCTTAATTTATCATGGAACCATTTCAACACAAGAGTTCCTCCTGAAATTGAGTTTCTACAGAACTTAACGGTATTGGATCTTAGGAACAGTGCACTGATTGGTTCGGTTCCTGCTGATATATGTGAGTCTCAGAGTCTTCAGATACTTCAACTGGATGGTAACTCACTAACCGGTTCTATACCGGAAGGAATCGGAAACTGCTCTTCTCTTAAATTGTTGAGTTTGTCTCATAACAATCTTACCGGTCCTATTCCTAAATCTCTTTCAAACTTACAAGAGCTCAAGATTTTAAAGCTAGAGGCTAATAAGCTTAGTGGAGAAATACCGAAAGAGCTTGGGGATTTGCAGAATCTGTTATTGGTTAACGTTTCGTTTAACCGACTTATCGGAAGGTTACCATTGGGAGATGTGTTCCAAAGCTTAGACCAGAGTGCTATACAAGGAAACCTAGGTATTTGTTCACCGTTGTTGAGAGGTCCTTGTACACTGAATGTTCCAAAGCCTCTTGTCATCAATCCAAACTCCTACGGGAATGGGAACAATATGCCTGGAAACCGAGCAAGCGGTGGTTCTGGAACATTCCACCGCAGAATGTTCCTGAGTGTTTCAGTGATTGTAGCAATATCAGCTGCGATTCTCATCTTCTCTGGAGTCATAATTATAACGCTGCTTAACGCGTCTGTTAGAAGACGGCTTGCATTTGTAGACAATGCGTTGGAAAGCATTTTCTCGGGGTCTTCGAAATCAGGAAGAAGCTTAATGATGGGTAAACTTGTTCTGTTAAACTCAAGAACTTCACGTTCCTCGTCTTCGTCTCAAGAGTTCGAAAGAAACCCAGAGTCACTTCTCAACAAAGCTTCAAGAATCGGTGAAGGGGTTTTTGGAACAGTCTACAAAGCACCTTTAGGAGAGCAAGGGAGAAACTTGGCTGTTAAGAAACTTGTCCCGTCTCCGATTCTTCAAAACCTAGAAGATTTTGATCGCGAAGTTCGGATATTGGCGAAAGCGAAGCACCCTAATCTAGTATCGATCAAAGGGTATTTCTGGACACCGGACTTGCATCTTCTGGTATCAGAATACATCCCCAATGGAAACTTGCAGTCCAAGTTACACGAACGAGAACCCTCAACACCGCCTCTTTCTTGGGACGTAAGATACAAAATCATCCTCGGTACAGCTAAAGGACTCGCTTATCTCCATCACACATTCCGTCCAACAACCATCCACTTCAACCTGAAACCGACAAACATCCTCCTCGACGAGAAAAACAACCCGAAAATCTCTGATTTCGGGCTATCTCGTCTCCTAACAACACAAGACGGGAACACAATGAACAACAACAGGTTTCAAAACGCTTTAGGCTACGTAGCGCCTGAACTAGAGTGTCAGAACTTAAGGGTCAACGAGAAATGCGATGTTTACGGGTTCGGGGTTTTGATACTCGAACTGGTGACTGGTCGGAGACCGGTGGAGTATGGTGAAGACAGCTTTGTGATACTTAGTGACCATGTTCGAGTTATGTTAGAACAAGGGAATGTGTTGGAGTGTATTGATCCTGTGATGGAGGAACAATACTCTGAAGATGAGGTTTTGCCTGTCTTGAAACTTGCTCTGGTCTGTACTTCTCAGATACCTTCGAATCGGCCAACAATGGCCGAGATTGTTCAGATCTTGCAGGTCATCAATTCTCCTGTTCCCCACCGTATCATGGATAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1016

Amino Acids

111.93

Weight (kDa)

6.58

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 73 4.3e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 97 - 230 6.8e-06 Leucine-rich repeat region
LRR_8 PF13855 102 - 159 8.2e-06 Leucine rich repeat
LRR_8 PF13855 149 - 209 2.3e-08 Leucine rich repeat
LRR_14 PF23598 209 - 326 3.3e-07 Leucine-rich repeat region
LRR_14 PF23598 268 - 375 2.4e-07 Leucine-rich repeat region
LRR_8 PF13855 271 - 331 3.3e-06 Leucine rich repeat
LRR_8 PF13855 301 - 355 4.1e-07 Leucine rich repeat
LRR_14 PF23598 414 - 558 3e-16 Leucine-rich repeat region
LRR_8 PF13855 464 - 523 8.3e-07 Leucine rich repeat
Pkinase PF00069 728 - 999 3.6e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 728 - 1001 1.4e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28040
fragaria_vesca FvH4_4g12350
malus_domestica MD04G1027600.v1.1
prunus_persica Prupe.1G177000_v2.0.a1
pyrus_communis pycom04g02420
rosa_chinensis RchiOBHm_Chr4g0410441
rosa_laevigata RLG00000008430
rosa_multiflora Rmu_sc0002111.1_g000005
rosa_roxburghii Rroxscaffold_5G00355250
rosa_rugosa Rorug04G0102700
rosa_samantha Rh4AG160700 Rh4BG159900 Rh4CG172800 Rh4DG155600
rosa_wichuraiana Rw4G013390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1991
AasI GACNNNNNNGTC 1 cut(s) 58
Acc36I ACCTGC 1 cut(s) 2995
Acc65I GGTACC 1 cut(s) 1075
AccB1I GGYRCC 1 cut(s) 1075
AccI GTMKAC 3 cut(s) 1291, 2034, 2220
AccII CGCG 3 cut(s) 285, 2006, 2313
AciI CCGC 6 cut(s) 283, 285, 935, 1893, 1915, 2462
AclI AACGTT 2 cut(s) 304, 1695
AclWI GGATC 5 cut(s) 950, 1047, 1210, 1413, 2876
AcoI YGGCCR 2 cut(s) 2972, 2982
AcuI CTGAAG 4 cut(s) 777, 857, 1451, 2928
AfaI GTAC 8 cut(s) 315, 487, 574, 966, 1077, 1813, 2503, 2950
AfiI CCNNNNNNNGG 2 cut(s) 944, 3037
AflII CTTAAG 1 cut(s) 2722
AflIII ACRYGT 1 cut(s) 2004
AgeI ACCGGT 5 cut(s) 956, 1208, 1499, 1571, 2794
AhdI GACNNNNNGTC 1 cut(s) 122
AjnI CCWGG 2 cut(s) 1294, 1876
AjuI GAANNNNNNNTTGG 6 cut(s) 320, 352, 1670, 1702, 2193, 2225
AloI GAACNNNNNNTCC 2 cut(s) 1049, 1081
Alw21I GWGCWC 2 cut(s) 1423, 1611
Alw44I GTGCAC 1 cut(s) 1419
AlwI GGATC 5 cut(s) 950, 1047, 1210, 1413, 2876
AlwNI CAGNNNCTG 2 cut(s) 880, 1681
Ama87I CYCGRG 2 cut(s) 231, 2059
AoxI GGCC 2 cut(s) 2972, 2982
ApaLI GTGCAC 1 cut(s) 1419
ApeKI GCWGC 2 cut(s) 1958, 1996
AsiGI ACCGGT 5 cut(s) 956, 1208, 1499, 1571, 2794
Asp700I GAANNNNTTC 2 cut(s) 773, 1349
Asp718I GGTACC 1 cut(s) 1075
AspA2I CCTAGG 1 cut(s) 1777
AspLEI GCGC 1 cut(s) 2701
AspS9I GGNCC 3 cut(s) 171, 1574, 1805
AsuHPI GGTGA 9 cut(s) 331, 866, 938, 959, 1310, 1782, 2210, 2791, 2819
AsuII TTCGAA 3 cut(s) 2069, 2154, 2966
AvaI CYCGRG 2 cut(s) 231, 2059
AvaII GGWCC 3 cut(s) 171, 1574, 1805
AvrII CCTAGG 1 cut(s) 1777
BaeGI GKGCMC 1 cut(s) 1423
BaeI ACNNNNGTAYC 2 cut(s) 1067, 1100
BanI GGYRCC 1 cut(s) 1075
BanII GRGCYC 1 cut(s) 1611
BbsI GAAGAC 8 cut(s) 118, 183, 1166, 1457, 2023, 2058, 2130, 2817
Bbv12I GWGCWC 2 cut(s) 1423, 1611
BbvI GCAGC 2 cut(s) 1945, 1983
BccI CCATC 7 cut(s) 381, 1148, 1478, 2086, 2535, 2558, 2884
BceAI ACGGC 1 cut(s) 2036
BcgI CGANNNNNNTGC 4 cut(s) 898, 932, 1222, 1256
BciT130I CCWGG 2 cut(s) 1296, 1878
BciVI GTATCC 1 cut(s) 720
BfaI CTAG 7 cut(s) 386, 639, 1625, 1778, 2297, 2351, 2708
BfmI CTRYAG 2 cut(s) 761, 1385
BfoI RGCGCY 1 cut(s) 2702
BfrI CTTAAG 1 cut(s) 2722
BfuAI ACCTGC 1 cut(s) 2995
BfuI GTATCC 1 cut(s) 720
BglII AGATCT 3 cut(s) 388, 685, 2997
BisI GCNGC 2 cut(s) 1959, 1997
BlnI CCTAGG 1 cut(s) 1777
BlsI GCNGC 2 cut(s) 1960, 1998
BmcAI AGTACT 2 cut(s) 315, 574
Bme1390I CCNGG 2 cut(s) 1296, 1878
Bme18I GGWCC 3 cut(s) 171, 1574, 1805
BmeRI GACNNNNNGTC 1 cut(s) 122
BmeT110I CYCGRG 2 cut(s) 231, 2059
BmgT120I GGNCC 3 cut(s) 171, 1574, 1805
BmiI GGNNCC 3 cut(s) 1077, 1346, 1437
BmrFI CCNGG 2 cut(s) 1296, 1878
BmsI GCATC 2 cut(s) 575, 2398
BpiI GAAGAC 8 cut(s) 118, 183, 1166, 1457, 2023, 2058, 2130, 2817
BplI GAGNNNNNCTC 2 cut(s) 1540, 1572
BpmI CTGGAG 4 cut(s) 679, 801, 964, 1998
Bpu14I TTCGAA 3 cut(s) 2069, 2154, 2966
BpuEI CTTGAG 7 cut(s) 182, 686, 1045, 1213, 1595, 2101, 2130
Bsa29I ATCGAT 1 cut(s) 2357
BsaAI YACGTR 1 cut(s) 2695
BsaBI GATNNNNATC 2 cut(s) 1967, 2307
BsaI GGTCTC 2 cut(s) 1035, 2785
BsaJI CCNNGG 4 cut(s) 283, 938, 1777, 2497
BsaXI ACNNNNNCTCC 8 cut(s) 392, 422, 464, 494, 611, 641, 1049, 1079
Bsc4I CCNNNNNNNGG 2 cut(s) 944, 3037
Bse118I RCCGGY 5 cut(s) 956, 1208, 1499, 1571, 2794
Bse1I ACTGG 4 cut(s) 1288, 1485, 2781, 2788
Bse3DI GCAATG 3 cut(s) 785, 991, 1135
Bse8I GATNNNNATC 2 cut(s) 1967, 2307
BseBI CCWGG 2 cut(s) 1296, 1878
BseCI ATCGAT 1 cut(s) 2357
BseDI CCNNGG 4 cut(s) 283, 938, 1777, 2497
BseGI GGATG 6 cut(s) 1314, 1489, 2409, 2493, 2550, 2577
BseJI GATNNNNATC 2 cut(s) 1967, 2307
BseLI CCNNNNNNNGG 2 cut(s) 944, 3037
BseMI GCAATG 3 cut(s) 785, 991, 1135
BseMII CTCAG 6 cut(s) 663, 1044, 1071, 1472, 1919, 2969
BseNI ACTGG 4 cut(s) 1288, 1485, 2781, 2788
BseRI GAGGAG 1 cut(s) 2573
BseSI GKGCMC 1 cut(s) 1423
BseXI GCAGC 2 cut(s) 1945, 1983
Bsh1236I CGCG 3 cut(s) 285, 2006, 2313
BshFI GGCC 2 cut(s) 2974, 2984
BshNI GGYRCC 1 cut(s) 1075
BshTI ACCGGT 5 cut(s) 956, 1208, 1499, 1571, 2794
BshVI ATCGAT 1 cut(s) 2357
BsiHKAI GWGCWC 2 cut(s) 1423, 1611
BsiHKCI CYCGRG 2 cut(s) 231, 2059
BslFI GGGAC 2 cut(s) 2258, 2489
BslI CCNNNNNNNGG 2 cut(s) 944, 3037
BsmBI CGTCTC 4 cut(s) 652, 2148, 2283, 2636
BsmFI GGGAC 2 cut(s) 2258, 2489
BsnI GGCC 2 cut(s) 2974, 2984
Bso31I GGTCTC 2 cut(s) 1035, 2785
BsoBI CYCGRG 2 cut(s) 231, 2059
Bsp119I TTCGAA 3 cut(s) 2069, 2154, 2966
Bsp1286I GDGCHC 2 cut(s) 1423, 1611
Bsp1407I TGTACA 1 cut(s) 1811
Bsp19I CCATGG 1 cut(s) 938
Bsp68I TCGCGA 1 cut(s) 2313
BspACI CCGC 6 cut(s) 283, 285, 935, 1893, 1915, 2462
BspANI GGCC 2 cut(s) 2974, 2984
BspCNI CTCAG 6 cut(s) 662, 1045, 1072, 1471, 1920, 2968
BspDI ATCGAT 1 cut(s) 2357
BspFNI CGCG 3 cut(s) 285, 2006, 2313
BspLI GGNNCC 3 cut(s) 1077, 1346, 1437
BspMI ACCTGC 1 cut(s) 2995
BspPI GGATC 5 cut(s) 950, 1047, 1210, 1413, 2876
BspQI GCTCTTC 1 cut(s) 1537
BspT104I TTCGAA 3 cut(s) 2069, 2154, 2966
BspT107I GGYRCC 1 cut(s) 1075
BspTI CTTAAG 1 cut(s) 2722
BspTNI GGTCTC 2 cut(s) 1035, 2785
BsrDI GCAATG 3 cut(s) 785, 991, 1135
BsrFI RCCGGY 5 cut(s) 956, 1208, 1499, 1571, 2794
BsrGI TGTACA 1 cut(s) 1811
BsrI ACTGG 4 cut(s) 1288, 1485, 2781, 2788
BssAI RCCGGY 5 cut(s) 956, 1208, 1499, 1571, 2794
BssECI CCNNGG 4 cut(s) 283, 938, 1777, 2497
BssNAI GTATAC 1 cut(s) 1292
BssT1I CCWWGG 2 cut(s) 938, 1777
Bst1107I GTATAC 1 cut(s) 1292
Bst2UI CCWGG 2 cut(s) 1296, 1878
Bst6I CTCTTC 3 cut(s) 876, 1316, 1537
BstAFI CTTAAG 1 cut(s) 2722
BstAUI TGTACA 1 cut(s) 1811
BstBAI YACGTR 1 cut(s) 2695
BstBI TTCGAA 3 cut(s) 2069, 2154, 2966
BstC8I GCNNGC 3 cut(s) 1235, 1891, 2025
BstDSI CCRYGG 2 cut(s) 283, 938
BstEII GGTNACC 2 cut(s) 632, 1722
BstF5I GGATG 6 cut(s) 1314, 1489, 2409, 2493, 2550, 2577
BstFNI CGCG 3 cut(s) 285, 2006, 2313
BstH2I RGCGCY 1 cut(s) 2702
BstHHI GCGC 1 cut(s) 2701
BstMWI GCNNNNNNNGC 1 cut(s) 1955
BstNI CCWGG 2 cut(s) 1296, 1878
BstPI GGTNACC 2 cut(s) 632, 1722
BstSCI CCNGG 2 cut(s) 1294, 1876
BstSFI CTRYAG 2 cut(s) 761, 1385
BstSLI GKGCMC 1 cut(s) 1423
BstSNI TACGTA 1 cut(s) 2695
BstUI CGCG 3 cut(s) 285, 2006, 2313
BstV1I GCAGC 2 cut(s) 1945, 1983
BstV2I GAAGAC 8 cut(s) 118, 183, 1166, 1457, 2023, 2058, 2130, 2817
BstX2I RGATCY 5 cut(s) 388, 685, 1039, 1405, 2997
BstYI RGATCY 5 cut(s) 388, 685, 1039, 1405, 2997
BstZ17I GTATAC 1 cut(s) 1292
Bsu15I ATCGAT 1 cut(s) 2357
BsuI GTATCC 1 cut(s) 720
BsuRI GGCC 2 cut(s) 2974, 2984
BsuTUI ATCGAT 1 cut(s) 2357
BtgI CCRYGG 2 cut(s) 283, 938
BtgZI GCGATG 1 cut(s) 2757
BtsCI GGATG 6 cut(s) 1314, 1489, 2409, 2493, 2550, 2577
BtsIMutI CAGTG 5 cut(s) 1281, 1421, 1423, 1814, 1944
BtuMI TCGCGA 1 cut(s) 2313
BveI ACCTGC 1 cut(s) 2995
Cac8I GCNNGC 3 cut(s) 1235, 1891, 2025
CaiI CAGNNNCTG 2 cut(s) 880, 1681
CfoI GCGC 1 cut(s) 2701
Cfr10I RCCGGY 5 cut(s) 956, 1208, 1499, 1571, 2794
Cfr13I GGNCC 3 cut(s) 171, 1574, 1805
Cfr42I CCGCGG 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 2357
CseI GACGC 1 cut(s) 1995
CsiI ACCWGGT 1 cut(s) 1294
Csp6I GTAC 8 cut(s) 314, 486, 573, 965, 1076, 1812, 2502, 2949
CspAI ACCGGT 5 cut(s) 956, 1208, 1499, 1571, 2794
CviQI GTAC 8 cut(s) 314, 486, 573, 965, 1076, 1812, 2502, 2949
DraI TTTAAA 5 cut(s) 309, 597, 819, 891, 1620
DrdI GACNNNNNNGTC 1 cut(s) 58
DriI GACNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 2 cut(s) 2972, 2982
Eam1104I CTCTTC 3 cut(s) 876, 1316, 1537
Eam1105I GACNNNNNGTC 1 cut(s) 122
EarI CTCTTC 3 cut(s) 876, 1316, 1537
Ecl136II GAGCTC 1 cut(s) 1609
Eco105I TACGTA 1 cut(s) 2695
Eco130I CCWWGG 2 cut(s) 938, 1777
Eco24I GRGCYC 1 cut(s) 1611
Eco31I GGTCTC 2 cut(s) 1035, 2785
Eco32I GATATC 1 cut(s) 530
Eco47I GGWCC 3 cut(s) 171, 1574, 1805
Eco53kI GAGCTC 1 cut(s) 1609
Eco57I CTGAAG 4 cut(s) 777, 857, 1451, 2928
Eco88I CYCGRG 2 cut(s) 231, 2059
Eco91I GGTNACC 2 cut(s) 632, 1722
EcoICRI GAGCTC 1 cut(s) 1609
EcoO109I RGGNCCY 1 cut(s) 1805
EcoO65I GGTNACC 2 cut(s) 632, 1722
EcoRII CCWGG 2 cut(s) 1294, 1876
EcoRV GATATC 1 cut(s) 530
EcoT14I CCWWGG 2 cut(s) 938, 1777
EcoT38I GRGCYC 1 cut(s) 1611
ErhI CCWWGG 2 cut(s) 938, 1777
Esp3I CGTCTC 4 cut(s) 652, 2148, 2283, 2636
FaqI GGGAC 2 cut(s) 2258, 2489
FauI CCCGC 1 cut(s) 942
FblI GTMKAC 3 cut(s) 1291, 2034, 2220
Fnu4HI GCNGC 2 cut(s) 1959, 1997
FokI GGATG 6 cut(s) 1301, 1496, 2396, 2480, 2537, 2564
FriOI GRGCYC 1 cut(s) 1611
Fsp4HI GCNGC 2 cut(s) 1959, 1997
FspBI CTAG 7 cut(s) 386, 639, 1625, 1778, 2297, 2351, 2708
GlaI GCGC 1 cut(s) 2700
GluI GCNGC 2 cut(s) 1959, 1997
GsuI CTGGAG 4 cut(s) 679, 801, 964, 1998
HaeII RGCGCY 1 cut(s) 2702
HaeIII GGCC 2 cut(s) 2974, 2984
HgaI GACGC 1 cut(s) 1995
HhaI GCGC 1 cut(s) 2701
Hin6I GCGC 1 cut(s) 2699
HinP1I GCGC 1 cut(s) 2699
HincII GTYRAC 3 cut(s) 993, 1693, 2731
HindII GTYRAC 3 cut(s) 993, 1693, 2731
HindIII AAGCTT 6 cut(s) 296, 1001, 1637, 1747, 2083, 2184
HpaI GTTAAC 2 cut(s) 993, 1693
HphI GGTGA 9 cut(s) 331, 866, 938, 959, 1310, 1782, 2210, 2791, 2819
Hpy99I CGWCG 4 cut(s) 107, 110, 257, 2591
HpyAV CCTTC 9 cut(s) 432, 487, 551, 801, 1017, 1508, 1713, 2195, 2973
HpyCH4IV ACGT 7 cut(s) 108, 207, 304, 1695, 2128, 2478, 2694
HpyF10VI GCNNNNNNNGC 1 cut(s) 1955
HpySE526I ACGT 7 cut(s) 108, 207, 304, 1695, 2128, 2478, 2694
HspAI GCGC 1 cut(s) 2699
KpnI GGTACC 1 cut(s) 1079
KspAI GTTAAC 2 cut(s) 993, 1693
KspI CCGCGG 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 1537
LmnI GCTCC 1 cut(s) 782
Lsp1109I GCAGC 2 cut(s) 1945, 1983
LweI GCATC 2 cut(s) 575, 2398
MabI ACCWGGT 1 cut(s) 1294
MaeI CTAG 7 cut(s) 386, 639, 1625, 1778, 2297, 2351, 2708
MaeII ACGT 7 cut(s) 108, 207, 304, 1695, 2128, 2478, 2694
MflI RGATCY 5 cut(s) 388, 685, 1039, 1405, 2997
MhlI GDGCHC 2 cut(s) 1423, 1611
MluCI AATT 7 cut(s) 90, 913, 1333, 1374, 1541, 1986, 3013
MluI ACGCGT 1 cut(s) 2004
MmeI TCCRAC 5 cut(s) 351, 2025, 2567, 2768, 2850
MroXI GAANNNNTTC 2 cut(s) 773, 1349
MslI CAYNNNNRTG 2 cut(s) 900, 1319
MspA1I CMGCKG 2 cut(s) 285, 1958
MspCI CTTAAG 1 cut(s) 2722
MspR9I CCNGG 2 cut(s) 1296, 1878
MvaI CCWGG 2 cut(s) 1296, 1878
MvnI CGCG 3 cut(s) 285, 2006, 2313
MwoI GCNNNNNNNGC 1 cut(s) 1955
NcoI CCATGG 1 cut(s) 938
NlaIV GGNNCC 3 cut(s) 1077, 1346, 1437
NmeAIII GCCGAG 1 cut(s) 3010
NmuCI GTSAC 5 cut(s) 947, 1245, 2169, 2779, 2831
NruI TCGCGA 1 cut(s) 2313
NspV TTCGAA 3 cut(s) 2069, 2154, 2966
PaeR7I CTCGAG 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 1537
PcsI WCGNNNNNNNCGW 2 cut(s) 2066, 2739
PdmI GAANNNNTTC 2 cut(s) 773, 1349
PflFI GACNNNGTC 1 cut(s) 807
PinAI ACCGGT 5 cut(s) 956, 1208, 1499, 1571, 2794
PkrI GCNGC 2 cut(s) 1960, 1998
Ppu21I YACGTR 1 cut(s) 2695
PpuMI RGGWCCY 1 cut(s) 1805
PsiI TTATAA 1 cut(s) 1991
Psp124BI GAGCTC 1 cut(s) 1611
Psp1406I AACGTT 2 cut(s) 304, 1695
Psp5II RGGWCCY 1 cut(s) 1805
Psp6I CCWGG 2 cut(s) 1294, 1876
PspEI GGTNACC 2 cut(s) 632, 1722
PspGI CCWGG 2 cut(s) 1294, 1876
PspN4I GGNNCC 3 cut(s) 1077, 1346, 1437
PspPI GGNCC 3 cut(s) 171, 1574, 1805
PspPPI RGGWCCY 1 cut(s) 1805
PstNI CAGNNNCTG 2 cut(s) 880, 1681
PsuI RGATCY 5 cut(s) 388, 685, 1039, 1405, 2997
PsyI GACNNNGTC 1 cut(s) 807
PvuII CAGCTG 1 cut(s) 1958
RruI TCGCGA 1 cut(s) 2313
RsaI GTAC 8 cut(s) 315, 487, 574, 966, 1077, 1813, 2503, 2950
RsaNI GTAC 8 cut(s) 314, 486, 573, 965, 1076, 1812, 2502, 2949
RseI CAYNNNNRTG 2 cut(s) 900, 1319
SacI GAGCTC 1 cut(s) 1611
SacII CCGCGG 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 1537
SatI GCNGC 2 cut(s) 1959, 1997
Sau96I GGNCC 3 cut(s) 171, 1574, 1805
ScaI AGTACT 2 cut(s) 315, 574
ScrFI CCNGG 2 cut(s) 1296, 1878
SduI GDGCHC 2 cut(s) 1423, 1611
SexAI ACCWGGT 1 cut(s) 1294
SfaNI GCATC 2 cut(s) 575, 2398
SfcI CTRYAG 2 cut(s) 761, 1385
Sfr274I CTCGAG 1 cut(s) 231
Sfr303I CCGCGG 1 cut(s) 286
SfuI TTCGAA 3 cut(s) 2069, 2154, 2966
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 3 cut(s) 171, 1574, 1805
SlaI CTCGAG 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 900, 1319
SmlI CTYRAG 9 cut(s) 161, 231, 665, 1024, 1228, 1610, 2116, 2145, 2722
SmoI CTYRAG 9 cut(s) 161, 231, 665, 1024, 1228, 1610, 2116, 2145, 2722
SnaBI TACGTA 1 cut(s) 2695
Sse9I AATT 7 cut(s) 90, 913, 1333, 1374, 1541, 1986, 3013
SsiI CCGC 6 cut(s) 283, 285, 935, 1893, 1915, 2462
SspMI CTAG 7 cut(s) 386, 639, 1625, 1778, 2297, 2351, 2708
SstI GAGCTC 1 cut(s) 1611
StyD4I CCNGG 2 cut(s) 1294, 1876
StyI CCWWGG 2 cut(s) 938, 1777
TaiI ACGT 7 cut(s) 111, 210, 307, 1698, 2131, 2481, 2697
TaqII GACCGA 1 cut(s) 188
TasI AATT 7 cut(s) 90, 913, 1333, 1374, 1541, 1986, 3013
TatI WGTACW 5 cut(s) 313, 572, 964, 1811, 2948
TscAI CASTG 5 cut(s) 1288, 1423, 1428, 1821, 1944
TseFI GTSAC 5 cut(s) 947, 1245, 2169, 2779, 2831
TseI GCWGC 2 cut(s) 1958, 1996
Tsp45I GTSAC 5 cut(s) 947, 1245, 2169, 2779, 2831
TspDTI ATGAA 3 cut(s) 186, 1303, 2675
TspGWI ACGGA 1 cut(s) 2528
TspRI CASTG 5 cut(s) 1288, 1423, 1428, 1821, 1944
Tth111I GACNNNGTC 1 cut(s) 807
Vha464I CTTAAG 1 cut(s) 2722
VneI GTGCAC 1 cut(s) 1419
VpaK11BI GGWCC 3 cut(s) 171, 1574, 1805
XhoI CTCGAG 1 cut(s) 231
XmaJI CCTAGG 1 cut(s) 1777
XmiI GTMKAC 3 cut(s) 1291, 2034, 2220
XmnI GAANNNNTTC 2 cut(s) 773, 1349
XspI CTAG 7 cut(s) 386, 639, 1625, 1778, 2297, 2351, 2708
ZrmI AGTACT 2 cut(s) 315, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.