Rorug04G0102700
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
16025578 .. 16026837
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0102700.1

Sequence Viewer

Length: 1260 bp
ATGAAGTTTTATGGGACTTACTTGTTTGTCTTATTCAGTCTTCTCCTACTATCCTCCTATGTTAATGGCGACCATGTTTTTTCCGATAGTTCAGCAAATTATGATGATGTCTTAAGGCTTGTGCCTTCAGGCCCGAATCCCCGAGAGTCTCCACCGTTGGATGTCTTCAGGCGTGTGCCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGATAATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCACCACCACTGAATGTCTTAACGCATGTCCCGCCTTCAGGCCCGAATCCTCGAGAGTCTCCACCGTCAGATGTCTTCATGCTTGTGCCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGATGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCACCACTGAATGTCTTAACGCGTGTGCCGCCTTCAGGCCCGAATCCTCGAGAGTCTCCACCGTCGGATGTCTTCAGGCTTGTGCCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGATGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCACCACTGAATGTCTTAACGCGTGTGCCGCCTTCAGGCCCGAATCCTCGAGAGTCTCCTCCGTTGGATGTCTTCAGGCTTGTGACTACGGGTCCTAACCCTCGGCAGTCACCACCGGTGAAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGGTGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCATCAGGTAATGTCTTCACGCGTGTGCTGCCTTCAGGCCAGAATCCTCGAGAGTCTCCACCGTTGGATGTCTTCAGGCTTGTACCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGATGATCTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCACCGCTGAAAGATTTCGAGTATAAGACATCAAATAGTTTTTACAATTTAGCTGATATTTCAAGGCGTGTACCTAAGGGACCTAATCCTCGAGAGTCTCCACCATTTAGTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

419

Amino Acids

45.82

Weight (kDa)

6.31

Isoelectric Point (pI)

71.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28040
fragaria_vesca FvH4_4g12350
malus_domestica MD04G1027600.v1.1
prunus_persica Prupe.1G177000_v2.0.a1
pyrus_communis pycom04g02420
rosa_chinensis RchiOBHm_Chr4g0410441
rosa_laevigata RLG00000008430
rosa_multiflora Rmu_sc0002111.1_g000005
rosa_roxburghii Rroxscaffold_5G00355250
rosa_rugosa Rorug04G0102700
rosa_samantha Rh4AG160700 Rh4BG159900 Rh4CG172800 Rh4DG155600
rosa_wichuraiana Rw4G013390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 535, 745, 955
AciI CCGC 4 cut(s) 332, 542, 752, 1148
AcuI CTGAAG 9 cut(s) 111, 151, 321, 531, 571, 741, 781, 951, 991
AfaI GTAC 2 cut(s) 1017, 1215
AfiI CCNNNNNNNGG 8 cut(s) 195, 338, 405, 548, 615, 758, 938, 1035
AflII CTTAAG 6 cut(s) 112, 265, 475, 685, 895, 1105
AflIII ACRYGT 3 cut(s) 533, 743, 953
AgeI ACCGGT 5 cut(s) 208, 418, 628, 838, 1048
AgsI TTSAA 1 cut(s) 1206
AhdI GACNNNNNGTC 1 cut(s) 813
AleI CACNNNNGTG 1 cut(s) 956
AluBI AGCT 1 cut(s) 1196
AluI AGCT 1 cut(s) 1196
Alw26I GTCTC 6 cut(s) 153, 363, 573, 783, 993, 1245
Ama87I CYCGRG 6 cut(s) 141, 351, 561, 771, 981, 1233
ApeKI GCWGC 6 cut(s) 298, 508, 718, 928, 961, 1138
AsiGI ACCGGT 5 cut(s) 208, 418, 628, 838, 1048
Asp700I GAANNNNTTC 2 cut(s) 848, 1157
AsuHPI GGTGA 7 cut(s) 195, 405, 615, 825, 853, 899, 1035
AvaI CYCGRG 6 cut(s) 141, 351, 561, 771, 981, 1233
AxyI CCTNAGG 1 cut(s) 1218
BbsI GAAGAC 7 cut(s) 32, 157, 367, 577, 787, 940, 997
BbvCI CCTCAGC 5 cut(s) 294, 504, 714, 924, 1134
BbvI GCAGC 6 cut(s) 310, 520, 730, 940, 948, 1150
BccI CCATC 1 cut(s) 943
BcoDI GTCTC 6 cut(s) 153, 363, 573, 783, 993, 1245
BfrI CTTAAG 6 cut(s) 112, 265, 475, 685, 895, 1105
BisI GCNGC 8 cut(s) 299, 509, 542, 719, 752, 929, 962, 1139
BlsI GCNGC 8 cut(s) 300, 510, 543, 720, 753, 930, 963, 1140
BmeRI GACNNNNNGTC 1 cut(s) 813
BmeT110I CYCGRG 6 cut(s) 141, 351, 561, 771, 981, 1233
BpiI GAAGAC 7 cut(s) 32, 157, 367, 577, 787, 940, 997
Bpu10I CCTNAGC 5 cut(s) 294, 504, 714, 924, 1134
BsaJI CCNNGG 6 cut(s) 194, 404, 614, 824, 883, 1034
BsaWI WCCGGW 5 cut(s) 208, 418, 628, 838, 1048
Bsc4I CCNNNNNNNGG 8 cut(s) 195, 338, 405, 548, 615, 758, 938, 1035
Bse118I RCCGGY 5 cut(s) 208, 418, 628, 838, 1048
Bse21I CCTNAGG 1 cut(s) 1218
BseDI CCNNGG 6 cut(s) 194, 404, 614, 824, 883, 1034
BseGI GGATG 9 cut(s) 166, 245, 455, 586, 665, 796, 875, 1006, 1085
BseLI CCNNNNNNNGG 8 cut(s) 195, 338, 405, 548, 615, 758, 938, 1035
BseMII CTCAG 5 cut(s) 308, 518, 728, 938, 1148
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 6 cut(s) 310, 520, 730, 940, 948, 1150
Bsh1236I CGCG 3 cut(s) 535, 745, 955
BshTI ACCGGT 5 cut(s) 208, 418, 628, 838, 1048
BsiHKCI CYCGRG 6 cut(s) 141, 351, 561, 771, 981, 1233
BsiSI CCGG 5 cut(s) 209, 419, 629, 839, 1049
BslI CCNNNNNNNGG 8 cut(s) 195, 338, 405, 548, 615, 758, 938, 1035
BsmAI GTCTC 6 cut(s) 153, 363, 573, 783, 993, 1245
BsoBI CYCGRG 6 cut(s) 141, 351, 561, 771, 981, 1233
Bsp143I GATC 1 cut(s) 1099
Bsp19I CCATGG 1 cut(s) 883
BspACI CCGC 4 cut(s) 332, 542, 752, 1148
BspCNI CTCAG 5 cut(s) 307, 517, 727, 937, 1147
BspFNI CGCG 3 cut(s) 535, 745, 955
BspTI CTTAAG 6 cut(s) 112, 265, 475, 685, 895, 1105
BsrFI RCCGGY 5 cut(s) 208, 418, 628, 838, 1048
BssAI RCCGGY 5 cut(s) 208, 418, 628, 838, 1048
BssECI CCNNGG 6 cut(s) 194, 404, 614, 824, 883, 1034
BssMI GATC 1 cut(s) 1099
BssT1I CCWWGG 1 cut(s) 883
Bst4CI ACNGT 4 cut(s) 156, 366, 576, 996
BstAFI CTTAAG 6 cut(s) 112, 265, 475, 685, 895, 1105
BstDEI CTNAG 6 cut(s) 294, 504, 714, 924, 1134, 1218
BstDSI CCRYGG 1 cut(s) 883
BstENI CCTNNNNNAGG 1 cut(s) 936
BstF5I GGATG 9 cut(s) 166, 245, 455, 586, 665, 796, 875, 1006, 1085
BstFNI CGCG 3 cut(s) 535, 745, 955
BstKTI GATC 1 cut(s) 1102
BstMAI GTCTC 6 cut(s) 153, 363, 573, 783, 993, 1245
BstMBI GATC 1 cut(s) 1099
BstMWI GCNNNNNNNGC 5 cut(s) 331, 541, 751, 961, 1147
BstNSI RCATGY 1 cut(s) 329
BstUI CGCG 3 cut(s) 535, 745, 955
BstV1I GCAGC 6 cut(s) 310, 520, 730, 940, 948, 1150
BstV2I GAAGAC 7 cut(s) 32, 157, 367, 577, 787, 940, 997
Bsu36I CCTNAGG 1 cut(s) 1218
BtgI CCRYGG 1 cut(s) 883
BtsCI GGATG 9 cut(s) 166, 245, 455, 586, 665, 796, 875, 1006, 1085
BtsIMutI CAGTG 3 cut(s) 308, 518, 728
Cfr10I RCCGGY 5 cut(s) 208, 418, 628, 838, 1048
Csp6I GTAC 2 cut(s) 1016, 1214
CspAI ACCGGT 5 cut(s) 208, 418, 628, 838, 1048
CviQI GTAC 2 cut(s) 1016, 1214
DdeI CTNAG 6 cut(s) 294, 504, 714, 924, 1134, 1218
DpnI GATC 1 cut(s) 1101
DpnII GATC 1 cut(s) 1099
DriI GACNNNNNGTC 1 cut(s) 813
Eam1105I GACNNNNNGTC 1 cut(s) 813
Eco130I CCWWGG 1 cut(s) 883
Eco57I CTGAAG 9 cut(s) 111, 151, 321, 531, 571, 741, 781, 951, 991
Eco81I CCTNAGG 1 cut(s) 1218
Eco88I CYCGRG 6 cut(s) 141, 351, 561, 771, 981, 1233
EcoNI CCTNNNNNAGG 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 883
ErhI CCWWGG 1 cut(s) 883
FauI CCCGC 1 cut(s) 339
Fnu4HI GCNGC 8 cut(s) 299, 509, 542, 719, 752, 929, 962, 1139
FokI GGATG 9 cut(s) 173, 232, 442, 593, 652, 803, 862, 1013, 1072
Fsp4HI GCNGC 8 cut(s) 299, 509, 542, 719, 752, 929, 962, 1139
GluI GCNGC 8 cut(s) 299, 509, 542, 719, 752, 929, 962, 1139
HapII CCGG 5 cut(s) 209, 419, 629, 839, 1049
HpaII CCGG 5 cut(s) 209, 419, 629, 839, 1049
HphI GGTGA 7 cut(s) 195, 405, 615, 825, 853, 899, 1035
Hpy166II GTNNAC 1 cut(s) 1214
Hpy188I TCNGA 8 cut(s) 85, 288, 370, 498, 580, 708, 918, 1128
Hpy188III TCNNGA 5 cut(s) 353, 563, 773, 983, 1235
Hpy8I GTNNAC 1 cut(s) 1214
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 5 cut(s) 135, 345, 555, 765, 975
HpyCH4III ACNGT 4 cut(s) 156, 366, 576, 996
HpyCH4V TGCA 4 cut(s) 214, 424, 634, 1054
HpyF10VI GCNNNNNNNGC 5 cut(s) 331, 541, 751, 961, 1147
HpyF3I CTNAG 6 cut(s) 294, 504, 714, 924, 1134, 1218
KflI GGGWCCC 4 cut(s) 185, 395, 605, 1025
Kzo9I GATC 1 cut(s) 1099
Lsp1109I GCAGC 6 cut(s) 310, 520, 730, 940, 948, 1150
MaeIII GTNAC 6 cut(s) 201, 411, 621, 805, 831, 1041
MalI GATC 1 cut(s) 1101
MboI GATC 1 cut(s) 1099
MboII GAAGA 7 cut(s) 32, 157, 367, 577, 787, 940, 997
MluCI AATT 2 cut(s) 97, 1189
MluI ACGCGT 3 cut(s) 533, 743, 953
MlyI GAGTC 6 cut(s) 155, 365, 575, 785, 995, 1247
MmeI TCCRAC 9 cut(s) 138, 273, 483, 558, 693, 768, 903, 978, 1113
MroXI GAANNNNTTC 2 cut(s) 848, 1157
MslI CAYNNNNRTG 6 cut(s) 258, 383, 468, 678, 888, 956
MspA1I CMGCKG 1 cut(s) 1150
MspCI CTTAAG 6 cut(s) 112, 265, 475, 685, 895, 1105
MspI CCGG 5 cut(s) 209, 419, 629, 839, 1049
MvnI CGCG 3 cut(s) 535, 745, 955
MwoI GCNNNNNNNGC 5 cut(s) 331, 541, 751, 961, 1147
NcoI CCATGG 1 cut(s) 883
NdeII GATC 1 cut(s) 1099
NmeAIII GCCGAG 5 cut(s) 175, 385, 595, 805, 1015
NmuCI GTSAC 6 cut(s) 201, 411, 621, 805, 831, 1041
NspI RCATGY 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 956
PaeR7I CTCGAG 5 cut(s) 351, 561, 771, 981, 1233
PdmI GAANNNNTTC 2 cut(s) 848, 1157
PinAI ACCGGT 5 cut(s) 208, 418, 628, 838, 1048
PkrI GCNGC 8 cut(s) 300, 510, 543, 720, 753, 930, 963, 1140
PleI GAGTC 6 cut(s) 154, 364, 574, 784, 994, 1246
PpsI GAGTC 6 cut(s) 154, 364, 574, 784, 994, 1246
PpuMI RGGWCCY 6 cut(s) 185, 395, 605, 815, 1025, 1223
Psp5II RGGWCCY 6 cut(s) 185, 395, 605, 815, 1025, 1223
PspPPI RGGWCCY 6 cut(s) 185, 395, 605, 815, 1025, 1223
RsaI GTAC 2 cut(s) 1017, 1215
RsaNI GTAC 2 cut(s) 1016, 1214
RseI CAYNNNNRTG 6 cut(s) 258, 383, 468, 678, 888, 956
SatI GCNGC 8 cut(s) 299, 509, 542, 719, 752, 929, 962, 1139
Sau3AI GATC 1 cut(s) 1099
SchI GAGTC 6 cut(s) 155, 365, 575, 785, 995, 1247
Sfr274I CTCGAG 5 cut(s) 351, 561, 771, 981, 1233
SgrAI CRCCGGYG 5 cut(s) 208, 418, 628, 838, 1048
SlaI CTCGAG 5 cut(s) 351, 561, 771, 981, 1233
SmiMI CAYNNNNRTG 6 cut(s) 258, 383, 468, 678, 888, 956
Sse9I AATT 2 cut(s) 97, 1189
SsiI CCGC 4 cut(s) 332, 542, 752, 1148
StyI CCWWGG 1 cut(s) 883
TaaI ACNGT 4 cut(s) 156, 366, 576, 996
TasI AATT 2 cut(s) 97, 1189
TauI GCSGC 2 cut(s) 544, 754
TscAI CASTG 3 cut(s) 315, 525, 735
TseFI GTSAC 6 cut(s) 201, 411, 621, 805, 831, 1041
TseI GCWGC 6 cut(s) 298, 508, 718, 928, 961, 1138
Tsp45I GTSAC 6 cut(s) 201, 411, 621, 805, 831, 1041
TspDTI ATGAA 7 cut(s) 17, 234, 367, 444, 654, 864, 1074
TspGWI ACGGA 2 cut(s) 774, 1245
TspRI CASTG 3 cut(s) 315, 525, 735
Vha464I CTTAAG 6 cut(s) 112, 265, 475, 685, 895, 1105
XagI CCTNNNNNAGG 1 cut(s) 936
XceI RCATGY 1 cut(s) 329
XhoI CTCGAG 5 cut(s) 351, 561, 771, 981, 1233
XmnI GAANNNNTTC 2 cut(s) 848, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.