AT3G46390

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
17071255 .. 17071683
429 bp
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UTR
Exon/CDS
Intron
AT3G46390.1

Sequence Viewer

Length: 210 bp
ATGAAGAGATATTCAACAAAGCATTTTAAACGCATTCTCATTGCTAATAACGTTAACATCGACATTGACCTGAAAACTGGAATCGTTGCTAAGAATATGGCTAAGAAAGAGAAGATCGAGCAAGTGATTTCAATGGGTGGAATAATGTGGGAAGGTCTCAATTCGAGTTTAATCAAAGTCGATGAAGCTTTGCTTAAGCAGCAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.86

Weight (kDa)

9.76

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019601)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 51
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 2 cut(s) 15, 132
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 194
BglII AGATCT 1 cut(s) 204
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 114, 204
BspTI CTTAAG 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 82
BssMI GATC 2 cut(s) 114, 204
BstAFI CTTAAG 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 90, 102
BstKTI GATC 2 cut(s) 117, 207
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 114, 204
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
CviJI RGCY 2 cut(s) 101, 188
CviKI_1 RGCY 2 cut(s) 101, 188
DdeI CTNAG 2 cut(s) 90, 102
DpnI GATC 2 cut(s) 116, 206
DpnII GATC 2 cut(s) 114, 204
DraI TTTAAA 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 161
FaiI YATR 1 cut(s) 98
FalI AAGNNNNNCTT 2 cut(s) 177, 209
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
FspEI CC 9 cut(s) 63, 83, 83, 119, 120, 123, 133, 134, 138
GluI GCNGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 1 cut(s) 81
HpaI GTTAAC 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 90, 102
HpySE526I ACGT 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 114, 204
LpnPI CCDG 2 cut(s) 63, 83
MaeII ACGT 1 cut(s) 51
MalI GATC 2 cut(s) 116, 206
MboI GATC 2 cut(s) 114, 204
MboII GAAGA 2 cut(s) 16, 124
MflI RGATCY 1 cut(s) 204
MluCI AATT 1 cut(s) 160
MseI TTAA 4 cut(s) 27, 54, 170, 195
MspCI CTTAAG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 2 cut(s) 114, 204
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 201
Psp1406I AACGTT 1 cut(s) 51
PsuI RGATCY 1 cut(s) 204
SaqAI TTAA 4 cut(s) 27, 54, 170, 195
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 2 cut(s) 114, 204
SetI ASST 4 cut(s) 54, 72, 157, 190
SgeI CNNG 5 cut(s) 82, 90, 130, 134, 177
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 1 cut(s) 160
TaiI ACGT 1 cut(s) 54
TaqI TCGA 4 cut(s) 60, 117, 164, 180
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 4 cut(s) 27, 54, 170, 195
Tru9I TTAA 4 cut(s) 27, 54, 170, 195
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 17, 198
Vha464I CTTAAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.