AT3G56530
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0019601
Physical Location & Seq
Reverse (-)
20948911 .. 20950045
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56530.1

Sequence Viewer

Length: 960 bp
ATGGCGATTCCACAAAGAAACAAGCGCAAAGCAAGATCCTCGCCGGAACGGCTAACACAACCGCCGGAACTACCACACAACTCCGACGTTCCTTCTTCTTCGTCTTCTTCTGCCGCTGATAATTTCTTTTCTTGGTCGACGAAACAGTTTGCTTTCCCGCCAGGTTATAGATTTGTACCAAAGGACCAAGAACTCATCTTTCATTACTTGAAACCCTTTTCGCAAGGCAATAAATGCTCATTGCTCAATGTTCCTATCCATCGTGTGAACATCTACGAGTCAAATCCACAACATCTTTCAGAGAAATATGAGAAGGGTAATGATAAAGATTGGTTCTATATATCGGAGAGGACCAAGACCGGTAAGGCTGGAAGAAGTAATAAACGTGTCGACAATGGAGGATATTGGAGCGCAACTGTAGCTGCCCAAAAGATCAACGCTGGAAATGGCATAGTCGGCTACAAGACTTCACTAGAGTACTATGTTGGGAAACAATCAAATAGTGTCAAAGGGGATTGGTTAATGCAAGAGTACTGGTTTGAGTCTTCTGATGATAACAACAACGAGAAGGTGGATCATGCTTTGTGCAAGATTTATCTGACTCCAGCGGCAGCAAAGAAGAAGAAAGCTGAGGAAGCAGAGAATGAGAAGCTGAAGAAAGAAGAAGACGTTGAGCAGCTGGATTTGAATCAACCAGACCAATTGCAGCTGCAACAGCCTCATGATATTGTGTATCAACCGCAGTATTGTTTACTTCCAGAACATCATCAGCCGCAGCCTTTTCCTGATAACTTTTCTGAGTTGATCAGCTTTCAACAGCAACCAGTGATGATCCCAGACGATTTTGAAGATTTCTTGGCTGAATTCACTAAACCACATTCACTGGATGGAGATGAAGAATTCAACAATTATGGTTTGTTTGAAGGCTTCTTTGACACAGAAGGAATGATAAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

319

Amino Acids

36.76

Weight (kDa)

5.44

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 53 - 178 9.3e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32337 AT3G46390 AT3G55210 AT3G56530 AT3G56560 AT5G39540 AT5G39690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 137, 390
AciI CCGC 6 cut(s) 62, 114, 158, 608, 740, 773
AclWI GGATC 3 cut(s) 30, 582, 826
AcsI RAATTY 2 cut(s) 863, 899
AcuI CTGAAG 1 cut(s) 674
AfaI GTAC 3 cut(s) 177, 479, 533
AflIII ACRYGT 1 cut(s) 385
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 6 cut(s) 211, 688, 815, 848, 904, 923
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 6 cut(s) 422, 629, 652, 679, 709, 810
AluI AGCT 6 cut(s) 422, 629, 652, 679, 709, 810
AlwI GGATC 3 cut(s) 30, 582, 826
ApeKI GCWGC 6 cut(s) 422, 611, 676, 706, 709, 775
ApoI RAATTY 2 cut(s) 863, 899
AsiGI ACCGGT 1 cut(s) 359
AspLEI GCGC 2 cut(s) 27, 413
AspS9I GGNCC 2 cut(s) 184, 351
AvaII GGWCC 2 cut(s) 184, 351
BbsI GAAGAC 3 cut(s) 96, 537, 672
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 6 cut(s) 409, 623, 688, 696, 718, 787
BccI CCATC 2 cut(s) 267, 881
BceAI ACGGC 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 804
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 417
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 9 cut(s) 114, 423, 609, 612, 677, 707, 710, 773, 776
BlsI GCNGC 9 cut(s) 115, 424, 610, 613, 678, 708, 711, 774, 777
BmcAI AGTACT 2 cut(s) 479, 533
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 2 cut(s) 184, 351
BmgT120I GGNCC 2 cut(s) 184, 351
BmrFI CCNGG 1 cut(s) 162
BpiI GAAGAC 3 cut(s) 96, 537, 672
BpmI CTGGAG 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 687
BsaWI WCCGGW 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 539, 824, 888
Bse3DI GCAATG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 892
BseJI GATNNNNATC 1 cut(s) 687
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 621, 789
BseNI ACTGG 3 cut(s) 539, 824, 888
BseXI GCAGC 6 cut(s) 409, 623, 688, 696, 718, 787
BshTI ACCGGT 1 cut(s) 359
BsiSI CCGG 3 cut(s) 44, 65, 360
Bsp143I GATC 5 cut(s) 35, 432, 574, 804, 831
BspACI CCGC 6 cut(s) 62, 114, 158, 608, 740, 773
BspCNI CTCAG 2 cut(s) 622, 790
BspHI TCATGA 1 cut(s) 721
BspPI GGATC 3 cut(s) 30, 582, 826
BsrDI GCAATG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 3 cut(s) 539, 824, 888
BssAI RCCGGY 1 cut(s) 359
BssMI GATC 5 cut(s) 35, 432, 574, 804, 831
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 147, 418
BstAPI GCANNNNNTGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 630, 798
BstF5I GGATG 1 cut(s) 892
BstHHI GCGC 2 cut(s) 27, 413
BstKTI GATC 5 cut(s) 38, 435, 577, 807, 834
BstMBI GATC 5 cut(s) 35, 432, 574, 804, 831
BstMWI GCNNNNNNNGC 6 cut(s) 49, 234, 419, 456, 635, 715
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 6 cut(s) 409, 623, 688, 696, 718, 787
BstV2I GAAGAC 3 cut(s) 96, 537, 672
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BtsCI GGATG 1 cut(s) 892
BtsIMutI CAGTG 2 cut(s) 831, 881
CciI TCATGA 1 cut(s) 721
CfoI GCGC 2 cut(s) 27, 413
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 184, 351
Csp6I GTAC 3 cut(s) 176, 478, 532
CspAI ACCGGT 1 cut(s) 359
CviAII CATG 2 cut(s) 578, 722
CviQI GTAC 3 cut(s) 176, 478, 532
DdeI CTNAG 2 cut(s) 630, 798
DpnI GATC 5 cut(s) 37, 434, 576, 806, 833
DpnII GATC 5 cut(s) 35, 432, 574, 804, 831
Eco47I GGWCC 2 cut(s) 184, 351
Eco57I CTGAAG 1 cut(s) 674
EcoRI GAATTC 2 cut(s) 863, 899
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 581, 725
FaiI YATR 9 cut(s) 168, 309, 339, 341, 452, 483, 579, 723, 912
FatI CATG 2 cut(s) 577, 721
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 804
FblI GTMKAC 2 cut(s) 137, 390
Fnu4HI GCNGC 9 cut(s) 114, 423, 609, 612, 677, 707, 710, 773, 776
FokI GGATG 1 cut(s) 899
Fsp4HI GCNGC 9 cut(s) 114, 423, 609, 612, 677, 707, 710, 773, 776
FspBI CTAG 1 cut(s) 473
GlaI GCGC 2 cut(s) 26, 412
GluI GCNGC 9 cut(s) 114, 423, 609, 612, 677, 707, 710, 773, 776
GsuI CTGGAG 1 cut(s) 588
HapII CCGG 3 cut(s) 44, 65, 360
HhaI GCGC 2 cut(s) 27, 413
Hin1II CATG 2 cut(s) 581, 725
Hin6I GCGC 2 cut(s) 25, 411
HinP1I GCGC 2 cut(s) 25, 411
HincII GTYRAC 2 cut(s) 138, 391
HindII GTYRAC 2 cut(s) 138, 391
HinfI GANTC 5 cut(s) 7, 278, 542, 601, 688
HpaII CCGG 3 cut(s) 44, 65, 360
Hpy166II GTNNAC 4 cut(s) 138, 268, 391, 752
Hpy188I TCNGA 6 cut(s) 85, 301, 346, 550, 600, 799
Hpy188III TCNNGA 3 cut(s) 722, 758, 785
Hpy8I GTNNAC 4 cut(s) 138, 268, 391, 752
Hpy99I CGWCG 2 cut(s) 89, 142
HpyAV CCTTC 5 cut(s) 102, 307, 562, 917, 935
HpyCH4III ACNGT 2 cut(s) 147, 418
HpyCH4IV ACGT 3 cut(s) 87, 385, 669
HpyCH4V TGCA 4 cut(s) 526, 588, 706, 712
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 234, 419, 456, 635, 715
HpyF3I CTNAG 2 cut(s) 630, 798
HpySE526I ACGT 3 cut(s) 87, 385, 669
Hsp92II CATG 2 cut(s) 581, 725
HspAI GCGC 2 cut(s) 25, 411
Ksp22I TGATCA 1 cut(s) 804
Kzo9I GATC 5 cut(s) 35, 432, 574, 804, 831
LmnI GCTCC 1 cut(s) 408
Lsp1109I GCAGC 6 cut(s) 409, 623, 688, 696, 718, 787
MaeI CTAG 1 cut(s) 473
MaeII ACGT 3 cut(s) 87, 385, 669
MalI GATC 5 cut(s) 37, 434, 576, 806, 833
MboI GATC 5 cut(s) 35, 432, 574, 804, 831
MfeI CAATTG 1 cut(s) 701
MflI RGATCY 1 cut(s) 35
MluCI AATT 5 cut(s) 121, 701, 863, 899, 907
MlyI GAGTC 3 cut(s) 287, 551, 595
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 49, 342, 392, 625, 729
MseI TTAA 2 cut(s) 521, 958
MspA1I CMGCKG 4 cut(s) 116, 608, 679, 709
MspI CCGG 3 cut(s) 44, 65, 360
MspR9I CCNGG 1 cut(s) 162
MunI CAATTG 1 cut(s) 701
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 6 cut(s) 49, 234, 419, 456, 635, 715
NdeII GATC 5 cut(s) 35, 432, 574, 804, 831
NlaIII CATG 2 cut(s) 581, 725
PagI TCATGA 1 cut(s) 721
PfeI GAWTC 2 cut(s) 7, 688
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 9 cut(s) 115, 424, 610, 613, 678, 708, 711, 774, 777
PleI GAGTC 3 cut(s) 286, 550, 595
PpsI GAGTC 3 cut(s) 286, 550, 595
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 2 cut(s) 184, 351
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 2 cut(s) 679, 709
RsaI GTAC 3 cut(s) 177, 479, 533
RsaNI GTAC 3 cut(s) 176, 478, 532
SalI GTCGAC 2 cut(s) 136, 389
SaqAI TTAA 2 cut(s) 521, 958
SatI GCNGC 9 cut(s) 114, 423, 609, 612, 677, 707, 710, 773, 776
Sau3AI GATC 5 cut(s) 35, 432, 574, 804, 831
Sau96I GGNCC 2 cut(s) 184, 351
ScaI AGTACT 2 cut(s) 479, 533
SchI GAGTC 3 cut(s) 287, 551, 595
ScrFI CCNGG 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 2 cut(s) 184, 351
Sse9I AATT 5 cut(s) 121, 701, 863, 899, 907
SsiI CCGC 6 cut(s) 62, 114, 158, 608, 740, 773
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 147, 418
TaiI ACGT 3 cut(s) 90, 388, 672
TaqI TCGA 2 cut(s) 137, 390
TasI AATT 5 cut(s) 121, 701, 863, 899, 907
TatI WGTACW 2 cut(s) 477, 531
TauI GCSGC 3 cut(s) 116, 611, 775
TfiI GAWTC 2 cut(s) 7, 688
Tru1I TTAA 2 cut(s) 521, 958
Tru9I TTAA 2 cut(s) 521, 958
TscAI CASTG 2 cut(s) 831, 888
TseI GCWGC 6 cut(s) 422, 611, 676, 706, 709, 775
TspDTI ATGAA 2 cut(s) 191, 909
TspRI CASTG 2 cut(s) 831, 888
VpaK11BI GGWCC 2 cut(s) 184, 351
XapI RAATTY 2 cut(s) 863, 899
XmiI GTMKAC 2 cut(s) 137, 390
XspI CTAG 1 cut(s) 473
ZrmI AGTACT 2 cut(s) 479, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.