AT3G56560

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0019601
Physical Location & Seq
Forward (+)
20955404 .. 20956867
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56560.1

Sequence Viewer

Length: 687 bp
ATGTTCGATTTCAAAATCTTCACGTTCAGTTTTGCTCAAAGTAAGTATCTTGAGAACATTCGCGAAAAGACATTAACCGAAGTGAGTACTAGTGACATAGAGCTTCTCCGACGAAATTCACAGCCTTTCCGGCGAGCTACACCATGCTCACTCACAGTCGACCTTCAGGCAAACTCTTTCACACCAAAGCTCCAAAGTTACTTGATGATGATGCCTGGAAGAAACAAGCGCAAAGAAAGATCCTGGCCGGAACCGCAAACGCAACCACAGTCAGAGATTCCTTCTTCTTCGTCTTCTTTGGCAGCTGATAACATGTCTCCTCCGTCGACGATAGCTTACGTATTACCGCCAGGTTTTAAGTTTATGCCAAACGATAAAGAAGTCATCAATTGTTACTTGAAACCTTACTCGGACGGCAACACCAACGTATTGCTCAATGTTCCTATTCATCGCGTCAATATCTACGAGTCGAATCCACAGACACTTTCAGGCAGAAACGTGGCGACACTGACGGAGGATATTGGCACGCAAAAGTGGCTGCCCAAAAGATTTAAAGCTGGAGATGGTGTCGTTGGCAACAAAAGGCCACTTGCATACTACGTTGGGAAACCATCAGAAGGCGTCAAAACTGATTGGTTAATGCAAGAATACTCTCTTGATCACTCTTCTCACAACACGACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

228

Amino Acids

25.92

Weight (kDa)

9.26

Isoelectric Point (pI)

66.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 116 - 166 2.3e-07 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32337 AT3G46390 AT3G55210 AT3G56530 AT3G56560 AT5G39540 AT5G39690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 159, 326
AccII CGCG 2 cut(s) 63, 453
AciI CCGC 2 cut(s) 254, 347
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 245
AcsI RAATTY 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 621
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 617
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 2 cut(s) 13, 400
AhlI ACTAGT 1 cut(s) 89
AjnI CCWGG 3 cut(s) 214, 242, 349
AluBI AGCT 6 cut(s) 103, 137, 190, 305, 335, 557
AluI AGCT 6 cut(s) 103, 137, 190, 305, 335, 557
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 234
AoxI GGCC 2 cut(s) 245, 584
ApeKI GCWGC 2 cut(s) 302, 538
ApoI RAATTY 1 cut(s) 115
AspLEI GCGC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 314, 525
BccI CCATC 2 cut(s) 557, 619
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 3 cut(s) 216, 244, 351
BclI TGATCA 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 321
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 2 cut(s) 303, 539
BlsI GCNGC 2 cut(s) 304, 540
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 216, 244, 351
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 3 cut(s) 216, 244, 351
BmsI GCATC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 621
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 552, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 617
BseBI CCWGG 3 cut(s) 216, 244, 351
BseLI CCNNNNNNNGG 1 cut(s) 617
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 314, 525
Bsh1236I CGCG 2 cut(s) 63, 453
BshFI GGCC 2 cut(s) 247, 586
BsiSI CCGG 2 cut(s) 130, 248
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 2 cut(s) 247, 586
Bsp143I GATC 2 cut(s) 239, 658
Bsp68I TCGCGA 1 cut(s) 63
BspACI CCGC 2 cut(s) 254, 347
BspANI GGCC 2 cut(s) 247, 586
BspFNI CGCG 2 cut(s) 63, 453
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 234
BssMI GATC 2 cut(s) 239, 658
BssNI GRCGYC 1 cut(s) 621
Bst2UI CCWGG 3 cut(s) 216, 244, 351
Bst4CI ACNGT 2 cut(s) 157, 270
Bst6I CTCTTC 1 cut(s) 670
BstACI GRCGYC 1 cut(s) 621
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 135, 527
BstFNI CGCG 2 cut(s) 63, 453
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 242, 661
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 239, 658
BstMWI GCNNNNNNNGC 3 cut(s) 130, 253, 535
BstNI CCWGG 3 cut(s) 216, 244, 351
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 3 cut(s) 214, 242, 349
BstSNI TACGTA 1 cut(s) 340
BstUI CGCG 2 cut(s) 63, 453
BstV1I GCAGC 2 cut(s) 314, 525
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 2 cut(s) 247, 586
BtgZI GCGATG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 506
BtuMI TCGCGA 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 135, 527
CfoI GCGC 1 cut(s) 231
CseI GACGC 2 cut(s) 442, 610
Csp6I GTAC 1 cut(s) 87
CviAII CATG 2 cut(s) 144, 313
CviQI GTAC 1 cut(s) 87
DpnI GATC 2 cut(s) 241, 660
DpnII GATC 2 cut(s) 239, 658
DraI TTTAAA 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 670
EarI CTCTTC 1 cut(s) 670
Eco105I TACGTA 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 149
EcoRII CCWGG 3 cut(s) 214, 242, 349
FaeI CATG 2 cut(s) 147, 316
FaiI YATR 5 cut(s) 98, 145, 314, 365, 595
FatI CATG 2 cut(s) 143, 312
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 2 cut(s) 159, 326
Fnu4HI GCNGC 2 cut(s) 303, 539
Fsp4HI GCNGC 2 cut(s) 303, 539
FspBI CTAG 1 cut(s) 90
GlaI GCGC 1 cut(s) 230
GluI GCNGC 2 cut(s) 303, 539
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 2 cut(s) 247, 586
HapII CCGG 2 cut(s) 130, 248
HgaI GACGC 2 cut(s) 442, 610
HhaI GCGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 2 cut(s) 147, 316
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 2 cut(s) 160, 327
HindII GTYRAC 2 cut(s) 160, 327
HinfI GANTC 3 cut(s) 277, 467, 472
HpaII CCGG 2 cut(s) 130, 248
Hpy166II GTNNAC 2 cut(s) 160, 327
Hpy188I TCNGA 4 cut(s) 110, 274, 412, 616
Hpy188III TCNNGA 3 cut(s) 50, 62, 656
Hpy8I GTNNAC 2 cut(s) 160, 327
Hpy99I CGWCG 3 cut(s) 114, 328, 331
HpyAV CCTTC 3 cut(s) 173, 291, 611
HpyCH4III ACNGT 2 cut(s) 157, 270
HpyCH4IV ACGT 5 cut(s) 23, 339, 426, 498, 600
HpyCH4V TGCA 2 cut(s) 593, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 253, 535
HpySE526I ACGT 5 cut(s) 23, 339, 426, 498, 600
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 2 cut(s) 147, 316
HspAI GCGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 2 cut(s) 239, 658
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 2 cut(s) 314, 525
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 90
MaeII ACGT 5 cut(s) 23, 339, 426, 498, 600
MaeIII GTNAC 3 cut(s) 92, 197, 392
MalI GATC 2 cut(s) 241, 660
MboI GATC 2 cut(s) 239, 658
MboII GAAGA 6 cut(s) 10, 231, 276, 279, 285, 657
MfeI CAATTG 1 cut(s) 388
MflI RGATCY 1 cut(s) 239
MluCI AATT 2 cut(s) 115, 388
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 2 cut(s) 330, 508
MseI TTAA 4 cut(s) 74, 357, 552, 638
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 130, 248
MspR9I CCNGG 3 cut(s) 216, 244, 351
MunI CAATTG 1 cut(s) 388
MvaI CCWGG 3 cut(s) 216, 244, 351
MvnI CGCG 2 cut(s) 63, 453
MwoI GCNNNNNNNGC 3 cut(s) 130, 253, 535
NdeII GATC 2 cut(s) 239, 658
NlaIII CATG 2 cut(s) 147, 316
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 92
NruI TCGCGA 1 cut(s) 63
NspI RCATGY 1 cut(s) 316
PciI ACATGT 1 cut(s) 312
PfeI GAWTC 2 cut(s) 277, 472
PkrI GCNGC 2 cut(s) 304, 540
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 340
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 214, 242, 349
PspGI CCWGG 3 cut(s) 214, 242, 349
PspN4I GGNNCC 1 cut(s) 252
PsuI RGATCY 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 305
RruI TCGCGA 1 cut(s) 63
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SalI GTCGAC 2 cut(s) 158, 325
SaqAI TTAA 4 cut(s) 74, 357, 552, 638
SatI GCNGC 2 cut(s) 303, 539
Sau3AI GATC 2 cut(s) 239, 658
ScaI AGTACT 1 cut(s) 88
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 3 cut(s) 216, 244, 351
SfaNI GCATC 1 cut(s) 201
SgrDI CGTCGACG 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SnaBI TACGTA 1 cut(s) 340
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 2 cut(s) 115, 388
SsiI CCGC 2 cut(s) 254, 347
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 214, 242, 349
TaaI ACNGT 2 cut(s) 157, 270
TaiI ACGT 5 cut(s) 26, 342, 429, 501, 603
TaqI TCGA 4 cut(s) 6, 159, 326, 470
TasI AATT 2 cut(s) 115, 388
TatI WGTACW 1 cut(s) 86
TfiI GAWTC 2 cut(s) 277, 472
Tru1I TTAA 4 cut(s) 74, 357, 552, 638
Tru9I TTAA 4 cut(s) 74, 357, 552, 638
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 2 cut(s) 302, 538
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 437
TspGWI ACGGA 2 cut(s) 312, 527
TspRI CASTG 1 cut(s) 513
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 316
XmiI GTMKAC 2 cut(s) 159, 326
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.