AT3G55210

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0019601
Physical Location & Seq
Forward (+)
20465095 .. 20466419
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G55210.1

Sequence Viewer

Length: 843 bp
ATGTCTCCTCCGTCGACGATAGCTTACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAACGATGAAGAAGTCATCCATTGTTACTTGAAACCTTACTCGGACGGCAACACGAACGTATTGCTCCATGTTCCTATTCATCTCGTCAATATCTACGAGTCGAATCCACAAACACTTTCAGAGGAATTCCAGAAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGATCAAGGTTTAAGCCAAACAAAGAGAGTTGGTTATGGTGCGAAAAGGCAGAAACGTGTCGACACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGAGATGGTGTCGTTCGCAACAAAAGGCCACTGGCATACTACGTTGGGAAACCATCAGAAGGCGTCAAAACTGATTGGTTAATGCAAGAATACTCTCTTGATCACTCTTCTCACAACAACGACAAGGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAAAGATGAATAAAGAAGTGGGAGAAGAGAAGAAGAAGCAGAAGAAAGGAGAAGCCGTTGTTTCAGTTGCACCTGTGGAAGCATTGGAAGAGCAGCTGCCTTGTAATGTCGAGTATCATCAACCGCTAGCACCGCTAGATTCTTGCCAACCGCAGCCTCATGATTTGGCGTATCAACAGCAGCAGTTTTGTCCAGGCCCACTGGATTCTTATCAACCGCAGCCTCATGATATGGAGAATCAGCAACCGCATAATGAGAAGCTGAAGAAAGAAGAAGACGTTGAGCAGCTGGATTTGCATCAACCAGACCAAGGAAAAGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

280

Amino Acids

31.82

Weight (kDa)

5.78

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 150 4.7e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019601)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32337 AT3G46390 AT3G55210 AT3G56530 AT3G56560 AT5G39540 AT5G39690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AccI GTMKAC 2 cut(s) 14, 297
AciI CCGC 6 cut(s) 35, 641, 650, 668, 734, 764
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 800
AcyI GRCGYC 1 cut(s) 414
AdeI CACNNNGTG 1 cut(s) 489
AfiI CCNNNNNNNGG 2 cut(s) 410, 827
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 2 cut(s) 37, 709
AluBI AGCT 4 cut(s) 23, 613, 778, 805
AluI AGCT 4 cut(s) 23, 613, 778, 805
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 2 cut(s) 377, 712
ApeKI GCWGC 7 cut(s) 332, 610, 613, 670, 697, 736, 802
ApoI RAATTY 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 713
AsuNHI GCTAGC 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 798
BbvI GCAGC 7 cut(s) 319, 600, 622, 682, 709, 748, 814
BccI CCATC 2 cut(s) 350, 412
BceAI ACGGC 2 cut(s) 118, 557
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 2 cut(s) 39, 711
BclI TGATCA 2 cut(s) 238, 451
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 644, 653
BglII AGATCT 1 cut(s) 495
BisI GCNGC 7 cut(s) 333, 611, 614, 671, 698, 737, 803
BlsI GCNGC 7 cut(s) 334, 612, 615, 672, 699, 738, 804
Bme1390I CCNGG 2 cut(s) 39, 711
BmgT120I GGNCC 1 cut(s) 713
BmrFI CCNGG 2 cut(s) 39, 711
BmsI GCATC 2 cut(s) 823, 827
BmtI GCTAGC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 798
BpmI CTGGAG 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 2 cut(s) 726, 813
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 826
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 827
Bse1I ACTGG 2 cut(s) 387, 723
Bse8I GATNNNNATC 2 cut(s) 726, 813
BseBI CCWGG 2 cut(s) 39, 711
BseDI CCNNGG 1 cut(s) 826
BseGI GGATG 2 cut(s) 72, 842
BseJI GATNNNNATC 2 cut(s) 726, 813
BseLI CCNNNNNNNGG 2 cut(s) 410, 827
BseNI ACTGG 2 cut(s) 387, 723
BseXI GCAGC 7 cut(s) 319, 600, 622, 682, 709, 748, 814
BshFI GGCC 2 cut(s) 379, 714
BslI CCNNNNNNNGG 2 cut(s) 410, 827
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 379, 714
Bsp143I GATC 4 cut(s) 238, 342, 451, 495
BspACI CCGC 6 cut(s) 35, 641, 650, 668, 734, 764
BspANI GGCC 2 cut(s) 379, 714
BspHI TCATGA 2 cut(s) 676, 742
BspOI GCTAGC 1 cut(s) 647
BspQI GCTCTTC 1 cut(s) 600
BsrI ACTGG 2 cut(s) 387, 723
BssECI CCNNGG 1 cut(s) 826
BssMI GATC 4 cut(s) 238, 342, 451, 495
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 826
Bst2UI CCWGG 2 cut(s) 39, 711
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 3 cut(s) 463, 537, 600
BstACI GRCGYC 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 321, 645
BstF5I GGATG 2 cut(s) 72, 842
BstKTI GATC 4 cut(s) 241, 345, 454, 498
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 238, 342, 451, 495
BstMWI GCNNNNNNNGC 3 cut(s) 329, 649, 811
BstNI CCWGG 2 cut(s) 39, 711
BstSCI CCNGG 2 cut(s) 37, 709
BstSNI TACGTA 1 cut(s) 28
BstV1I GCAGC 7 cut(s) 319, 600, 622, 682, 709, 748, 814
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuRI GGCC 2 cut(s) 379, 714
BtsCI GGATG 2 cut(s) 72, 842
BtsIMutI CAGTG 3 cut(s) 333, 380, 716
Cac8I GCNNGC 2 cut(s) 321, 645
CaiI CAGNNNCTG 1 cut(s) 332
CciI TCATGA 2 cut(s) 676, 742
Cfr13I GGNCC 1 cut(s) 713
CseI GACGC 1 cut(s) 403
CviAII CATG 3 cut(s) 125, 677, 743
DpnI GATC 4 cut(s) 240, 344, 453, 497
DpnII GATC 4 cut(s) 238, 342, 451, 495
DraIII CACNNNGTG 1 cut(s) 489
Eam1104I CTCTTC 3 cut(s) 463, 537, 600
EarI CTCTTC 3 cut(s) 463, 537, 600
Eco105I TACGTA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 826
Eco57I CTGAAG 1 cut(s) 800
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 37, 709
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 3 cut(s) 128, 680, 746
FaiI YATR 8 cut(s) 126, 218, 273, 388, 678, 744, 749, 768
FatI CATG 3 cut(s) 124, 676, 742
FbaI TGATCA 2 cut(s) 238, 451
FblI GTMKAC 2 cut(s) 14, 297
Fnu4HI GCNGC 7 cut(s) 333, 611, 614, 671, 698, 737, 803
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 7 cut(s) 333, 611, 614, 671, 698, 737, 803
FspBI CTAG 2 cut(s) 644, 653
GluI GCNGC 7 cut(s) 333, 611, 614, 671, 698, 737, 803
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 2 cut(s) 379, 714
HgaI GACGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 3 cut(s) 128, 680, 746
HincII GTYRAC 2 cut(s) 15, 298
HindII GTYRAC 2 cut(s) 15, 298
HinfI GANTC 5 cut(s) 155, 160, 656, 722, 754
Hpy166II GTNNAC 2 cut(s) 15, 298
Hpy188I TCNGA 3 cut(s) 100, 178, 409
Hpy188III TCNNGA 4 cut(s) 187, 449, 677, 743
Hpy8I GTNNAC 2 cut(s) 15, 298
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 2 cut(s) 184, 404
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 5 cut(s) 27, 114, 292, 393, 795
HpyCH4V TGCA 4 cut(s) 436, 492, 587, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 649, 811
HpySE526I ACGT 5 cut(s) 27, 114, 292, 393, 795
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 3 cut(s) 128, 680, 746
Ksp22I TGATCA 2 cut(s) 238, 451
Kzo9I GATC 4 cut(s) 238, 342, 451, 495
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 7 cut(s) 319, 600, 622, 682, 709, 748, 814
LweI GCATC 2 cut(s) 823, 827
MaeI CTAG 2 cut(s) 644, 653
MaeII ACGT 5 cut(s) 27, 114, 292, 393, 795
MaeIII GTNAC 2 cut(s) 80, 194
MalI GATC 4 cut(s) 240, 344, 453, 497
MboI GATC 4 cut(s) 238, 342, 451, 495
MflI RGATCY 1 cut(s) 495
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 6 cut(s) 18, 172, 219, 302, 684, 750
MseI TTAA 3 cut(s) 45, 248, 431
MspA1I CMGCKG 2 cut(s) 613, 805
MspR9I CCNGG 2 cut(s) 39, 711
MvaI CCWGG 2 cut(s) 39, 711
MwoI GCNNNNNNNGC 3 cut(s) 329, 649, 811
NdeII GATC 4 cut(s) 238, 342, 451, 495
NheI GCTAGC 1 cut(s) 643
NlaIII CATG 3 cut(s) 128, 680, 746
PagI TCATGA 2 cut(s) 676, 742
PciSI GCTCTTC 1 cut(s) 600
PfeI GAWTC 4 cut(s) 160, 656, 722, 754
PkrI GCNGC 7 cut(s) 334, 612, 615, 672, 699, 738, 804
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Ppu21I YACGTR 1 cut(s) 28
PsiI TTATAA 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 37, 709
PspGI CCWGG 2 cut(s) 37, 709
PspPI GGNCC 1 cut(s) 713
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 495
PvuII CAGCTG 2 cut(s) 613, 805
SalI GTCGAC 2 cut(s) 13, 296
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 3 cut(s) 45, 248, 431
SatI GCNGC 7 cut(s) 333, 611, 614, 671, 698, 737, 803
Sau3AI GATC 4 cut(s) 238, 342, 451, 495
Sau96I GGNCC 1 cut(s) 713
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 39, 711
SfaNI GCATC 2 cut(s) 823, 827
SgrDI CGTCGACG 1 cut(s) 13
SnaBI TACGTA 1 cut(s) 28
Sse9I AATT 1 cut(s) 182
SsiI CCGC 6 cut(s) 35, 641, 650, 668, 734, 764
SspMI CTAG 2 cut(s) 644, 653
StyD4I CCNGG 2 cut(s) 37, 709
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 5 cut(s) 30, 117, 295, 396, 798
TaqI TCGA 4 cut(s) 14, 158, 297, 627
TasI AATT 1 cut(s) 182
TfiI GAWTC 4 cut(s) 160, 656, 722, 754
Tru1I TTAA 3 cut(s) 45, 248, 431
Tru9I TTAA 3 cut(s) 45, 248, 431
TscAI CASTG 3 cut(s) 333, 387, 723
TseI GCWGC 7 cut(s) 332, 610, 613, 670, 697, 736, 802
TspDTI ATGAA 3 cut(s) 78, 125, 539
TspGWI ACGGA 2 cut(s) 236, 321
TspRI CASTG 3 cut(s) 333, 387, 723
XapI RAATTY 1 cut(s) 182
XmiI GTMKAC 2 cut(s) 14, 297
XspI CTAG 2 cut(s) 644, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.