AT3G47500

DOF factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013861
Physical Location & Seq
Reverse (-)
17503883 .. 17506124
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47500.1

Sequence Viewer

Length: 1347 bp
ATGATGATGGAGACTAGAGATCCAGCTATTAAGCTTTTCGGTATGAAAATCCCTTTTCCGTCGGTTTTTGAATCGGCAGTTACGGTGGAGGATGACGAAGAAGATGACTGGAGCGGCGGAGATGACAAATCACCAGAGAAGGTAACTCCAGAGTTATCAGATAAGAACAACAACAACTGTAACGACAACAGTTTTAACAATTCGAAACCCGAAACCTTGGACAAAGAGGAAGCGACATCAACTGATCAGATAGAGAGTAGTGACACGCCTGAGGATAATCAGCAGACGACACCTGATGGTAAAACCCTAAAGAAACCGACTAAGATTCTACCGTGTCCGAGATGCAAAAGCATGGAGACCAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTGCAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCTGTGGGGGCAGGACGTCGTAAGAACAAAAGCTCATCTTCTCATTACCGTCACATCACTATTTCCGAGGCTCTTGAGGCTGCGAGGCTTGACCCGGGCTTACAGGCAAACACAAGGGTCTTGAGTTTTGGTCTCGAAGCTCAGCAGCAGCACGTTGCTGCTCCCATGACACCTGTGATGAAGCTACAAGAAGATCAAAAGGTCTCAAACGGTGCTAGGAACAGGTTTCACGGGTTAGCGGATCAACGGCTTGTAGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAACAATCACTCAGTGGATGAATCAAGAGCACAAAGCGGCAGTGTTGTTGAAGCACAAATGAACAACAACAACAACAATAACATGAATGGTTATGCTTGCATCCCAGGTGTTCCATGGCCTTACACGTGGAATCCAGCGATGCCTCCACCAGGTTTTTACCCGCCTCCAGGGTATCCAATGCCGTTTTACCCTTACTGGACCATCCCAATGCTACCACCGCATCAATCCTCATCGCCTATAAGCCAAAAGTGTTCAAATACAAACTCTCCGACTCTCGGAAAGCATCCGAGAGATGAAGGATCATCGAAAAAGGACAACGAGACAGAGCGAAAACAGAAGGCCGGGTGCGTTCTGGTCCCGAAAACGTTGAGAATAGATGATCCTAACGAAGCAGCAAAGAGCTCGATATGGACAACATTGGGAATCAAGAACGAGGCGATGTGCAAAGCCGGTGGTATGTTCAAAGGGTTTGATCATAAGACAAAGATGTATAACAACGACAAAGCTGAGAACTCCCCTGTTCTTTCTGCTAACCCTGCTGCTCTATCAAGATCACACAATTTCCATGAACAGATTTAG

Protein Analysis

448

Amino Acids

49.73

Weight (kDa)

6.61

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 108 - 164 1.8e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013861)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47500
fragaria_vesca FvH4_5g14830
malus_domestica MD06G1194500.v1.1 MD14G1201600.v1.1
prunus_persica Prupe.5G194600_v2.0.a1
pyrus_communis pycom06g17220 pycom14g16700
rosa_chinensis RchiOBHm_Chr7g0181561
rosa_laevigata RLG00000005183
rosa_multiflora Rmu_sc0000988.1_g000022
rosa_roxburghii Rroxscaffold_3G00271900
rosa_rugosa Rorug06G0442200
rosa_samantha Rh7AG044400 Rh7BG043400 Rh7CG045200 Rh7DG044000
rosa_wichuraiana Rw7G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 478
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 7 cut(s) 114, 117, 698, 747, 804, 929, 986
AclI AACGTT 1 cut(s) 1133
AclWI GGATC 6 cut(s) 14, 708, 744, 757, 1075, 1142
AcvI CACGTG 1 cut(s) 894
AcyI GRCGYC 1 cut(s) 475
AdeI CACNNNGTG 1 cut(s) 781
AfiI CCNNNNNNNGG 3 cut(s) 917, 935, 1043
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 4 cut(s) 71, 818, 1023, 1231
AjnI CCWGG 3 cut(s) 871, 916, 934
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 8 cut(s) 26, 34, 492, 599, 643, 716, 1170, 1274
AluI AGCT 8 cut(s) 26, 34, 492, 599, 643, 716, 1170, 1274
Alw21I GWGCWC 2 cut(s) 799, 1172
Alw26I GTCTC 5 cut(s) 5, 350, 596, 667, 1082
AlwI GGATC 6 cut(s) 14, 708, 744, 757, 1075, 1142
Ama87I CYCGRG 2 cut(s) 553, 717
AoxI GGCC 2 cut(s) 884, 1107
ApeKI GCWGC 6 cut(s) 539, 604, 607, 617, 1160, 1307
AspS9I GGNCC 2 cut(s) 966, 1123
AsuC2I CCSGG 3 cut(s) 554, 555, 1111
AsuHPI GGTGA 1 cut(s) 123
AsuII TTCGAA 1 cut(s) 203
AvaI CYCGRG 2 cut(s) 553, 717
AvaII GGWCC 2 cut(s) 966, 1123
AxyI CCTNAGG 1 cut(s) 270
BamHI GGATCC 1 cut(s) 749
BanII GRGCYC 1 cut(s) 1172
BbrPI CACGTG 1 cut(s) 894
Bbv12I GWGCWC 2 cut(s) 799, 1172
BbvI GCAGC 6 cut(s) 526, 604, 616, 619, 1172, 1294
BccI CCATC 2 cut(s) 290, 977
BceAI ACGGC 2 cut(s) 722, 934
BcgI CGANNNNNNTGC 2 cut(s) 1152, 1186
BciT130I CCWGG 3 cut(s) 873, 918, 936
BciVI GTATCC 1 cut(s) 951
BclI TGATCA 2 cut(s) 244, 1240
BcnI CCSGG 3 cut(s) 554, 555, 1111
BcoDI GTCTC 5 cut(s) 5, 350, 596, 667, 1082
BfaI CTAG 2 cut(s) 15, 675
BfuI GTATCC 1 cut(s) 951
BisI GCNGC 8 cut(s) 115, 540, 605, 608, 618, 805, 1161, 1308
BlpI GCTNAGC 1 cut(s) 600
BlsI GCNGC 8 cut(s) 116, 541, 606, 609, 619, 806, 1162, 1309
Bme1390I CCNGG 6 cut(s) 554, 555, 873, 918, 936, 1111
Bme18I GGWCC 2 cut(s) 966, 1123
BmeT110I CYCGRG 2 cut(s) 553, 717
BmgT120I GGNCC 2 cut(s) 966, 1123
BmiI GGNNCC 2 cut(s) 751, 1125
BmrFI CCNGG 6 cut(s) 554, 555, 873, 918, 936, 1111
BmsI GCATC 5 cut(s) 332, 876, 897, 997, 1060
BpmI CTGGAG 4 cut(s) 130, 132, 459, 918
Bpu1102I GCTNAGC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 203
BpuEI CTTGAG 3 cut(s) 554, 601, 727
BpuMI CCSGG 3 cut(s) 554, 555, 1111
BsaAI YACGTR 1 cut(s) 894
BsaHI GRCGYC 1 cut(s) 475
BsaI GGTCTC 3 cut(s) 350, 596, 667
BsaJI CCNNGG 6 cut(s) 216, 525, 553, 871, 881, 935
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 1018, 1048
Bsc4I CCNNNNNNNGG 3 cut(s) 917, 935, 1043
Bse118I RCCGGY 1 cut(s) 1217
Bse1I ACTGG 2 cut(s) 113, 968
Bse21I CCTNAGG 1 cut(s) 270
BseBI CCWGG 3 cut(s) 873, 918, 936
BseDI CCNNGG 6 cut(s) 216, 525, 553, 871, 881, 935
BseGI GGATG 5 cut(s) 97, 790, 867, 969, 1051
BseLI CCNNNNNNNGG 3 cut(s) 917, 935, 1043
BseMII CTCAG 4 cut(s) 261, 614, 792, 1266
BseNI ACTGG 2 cut(s) 113, 968
BseXI GCAGC 6 cut(s) 526, 604, 616, 619, 1172, 1294
BshFI GGCC 2 cut(s) 886, 1109
BsiHKAI GWGCWC 2 cut(s) 799, 1172
BsiHKCI CYCGRG 2 cut(s) 553, 717
BsiSI CCGG 3 cut(s) 554, 1110, 1218
BslFI GGGAC 2 cut(s) 457, 1109
BslI CCNNNNNNNGG 3 cut(s) 917, 935, 1043
BsmAI GTCTC 5 cut(s) 5, 350, 596, 667, 1082
BsmFI GGGAC 2 cut(s) 457, 1109
BsnI GGCC 2 cut(s) 886, 1109
Bso31I GGTCTC 3 cut(s) 350, 596, 667
BsoBI CYCGRG 2 cut(s) 553, 717
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 799, 1172
Bsp143I GATC 9 cut(s) 19, 244, 652, 700, 749, 1067, 1147, 1240, 1319
Bsp1720I GCTNAGC 1 cut(s) 600
Bsp19I CCATGG 1 cut(s) 881
BspACI CCGC 7 cut(s) 114, 117, 698, 747, 804, 929, 986
BspANI GGCC 2 cut(s) 886, 1109
BspCNI CTCAG 4 cut(s) 262, 613, 791, 1267
BspLI GGNNCC 2 cut(s) 751, 1125
BspPI GGATC 6 cut(s) 14, 708, 744, 757, 1075, 1142
BspT104I TTCGAA 1 cut(s) 203
BspTNI GGTCTC 3 cut(s) 350, 596, 667
BsrBI CCGCTC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 1217
BsrI ACTGG 2 cut(s) 113, 968
BssAI RCCGGY 1 cut(s) 1217
BssECI CCNNGG 6 cut(s) 216, 525, 553, 871, 881, 935
BssMI GATC 9 cut(s) 19, 244, 652, 700, 749, 1067, 1147, 1240, 1319
BssNI GRCGYC 1 cut(s) 475
BssT1I CCWWGG 2 cut(s) 216, 881
Bst2UI CCWGG 3 cut(s) 873, 918, 936
Bst4CI ACNGT 6 cut(s) 85, 179, 191, 333, 509, 671
BstACI GRCGYC 1 cut(s) 475
BstBAI YACGTR 1 cut(s) 894
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 865
BstDEI CTNAG 5 cut(s) 270, 321, 600, 778, 1275
BstDSI CCRYGG 1 cut(s) 881
BstENI CCTNNNNNAGG 1 cut(s) 915
BstF5I GGATG 5 cut(s) 97, 790, 867, 969, 1051
BstKTI GATC 9 cut(s) 22, 247, 655, 703, 752, 1070, 1150, 1243, 1322
BstMAI GTCTC 5 cut(s) 5, 350, 596, 667, 1082
BstMBI GATC 9 cut(s) 19, 244, 652, 700, 749, 1067, 1147, 1240, 1319
BstMWI GCNNNNNNNGC 3 cut(s) 536, 985, 1304
BstNI CCWGG 3 cut(s) 873, 918, 936
BstSCI CCNGG 6 cut(s) 552, 553, 871, 916, 934, 1109
BstV1I GCAGC 6 cut(s) 526, 604, 616, 619, 1172, 1294
BstX2I RGATCY 2 cut(s) 19, 749
BstYI RGATCY 2 cut(s) 19, 749
Bsu36I CCTNAGG 1 cut(s) 270
BsuI GTATCC 1 cut(s) 951
BsuRI GGCC 2 cut(s) 886, 1109
BtgI CCRYGG 1 cut(s) 881
BtgZI GCGATG 3 cut(s) 920, 984, 1220
BtsCI GGATG 5 cut(s) 97, 790, 867, 969, 1051
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 2 cut(s) 786, 814
Cac8I GCNNGC 1 cut(s) 865
Cfr10I RCCGGY 1 cut(s) 1217
Cfr13I GGNCC 2 cut(s) 966, 1123
Cfr9I CCCGGG 1 cut(s) 553
CsiI ACCWGGT 1 cut(s) 916
CspCI CAANNNNNGTGG 2 cut(s) 1201, 1236
CviAII CATG 5 cut(s) 352, 625, 850, 882, 1334
DdeI CTNAG 5 cut(s) 270, 321, 600, 778, 1275
DpnI GATC 9 cut(s) 21, 246, 654, 702, 751, 1069, 1149, 1242, 1321
DpnII GATC 9 cut(s) 19, 244, 652, 700, 749, 1067, 1147, 1240, 1319
DraIII CACNNNGTG 1 cut(s) 781
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 1170
Eco130I CCWWGG 2 cut(s) 216, 881
Eco24I GRGCYC 1 cut(s) 1172
Eco31I GGTCTC 3 cut(s) 350, 596, 667
Eco47I GGWCC 2 cut(s) 966, 1123
Eco53kI GAGCTC 1 cut(s) 1170
Eco72I CACGTG 1 cut(s) 894
Eco81I CCTNAGG 1 cut(s) 270
Eco88I CYCGRG 2 cut(s) 553, 717
EcoICRI GAGCTC 1 cut(s) 1170
EcoNI CCTNNNNNAGG 1 cut(s) 915
EcoRII CCWGG 3 cut(s) 871, 916, 934
EcoT14I CCWWGG 2 cut(s) 216, 881
EcoT38I GRGCYC 1 cut(s) 1172
ErhI CCWWGG 2 cut(s) 216, 881
FaeI CATG 5 cut(s) 355, 628, 853, 885, 1337
FalI AAGNNNNNCTT 2 cut(s) 481, 513
FaqI GGGAC 2 cut(s) 457, 1109
FatI CATG 5 cut(s) 351, 624, 849, 881, 1333
FauI CCCGC 1 cut(s) 936
FbaI TGATCA 2 cut(s) 244, 1240
Fnu4HI GCNGC 8 cut(s) 115, 540, 605, 608, 618, 805, 1161, 1308
FokI GGATG 5 cut(s) 104, 797, 854, 956, 1038
FriOI GRGCYC 1 cut(s) 1172
Fsp4HI GCNGC 8 cut(s) 115, 540, 605, 608, 618, 805, 1161, 1308
FspBI CTAG 2 cut(s) 15, 675
GluI GCNGC 8 cut(s) 115, 540, 605, 608, 618, 805, 1161, 1308
GsuI CTGGAG 4 cut(s) 130, 132, 459, 918
HaeIII GGCC 2 cut(s) 886, 1109
HapII CCGG 3 cut(s) 554, 1110, 1218
Hin1I GRCGYC 1 cut(s) 475
Hin1II CATG 5 cut(s) 355, 628, 853, 885, 1337
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 6 cut(s) 71, 325, 788, 898, 1039, 1191
HpaII CCGG 3 cut(s) 554, 1110, 1218
HphI GGTGA 1 cut(s) 123
Hpy188I TCNGA 8 cut(s) 160, 249, 339, 423, 526, 1038, 1046, 1056
Hpy188III TCNNGA 8 cut(s) 149, 533, 580, 593, 792, 1126, 1195, 1317
Hpy99I CGWCG 2 cut(s) 64, 480
HpyAV CCTTC 3 cut(s) 133, 1058, 1099
HpyCH4III ACNGT 6 cut(s) 85, 179, 191, 333, 509, 671
HpyCH4IV ACGT 4 cut(s) 475, 612, 893, 1133
HpyCH4V TGCA 4 cut(s) 345, 411, 867, 1212
HpyF10VI GCNNNNNNNGC 3 cut(s) 536, 985, 1304
HpyF3I CTNAG 5 cut(s) 270, 321, 600, 778, 1275
HpySE526I ACGT 4 cut(s) 475, 612, 893, 1133
Hsp92I GRCGYC 1 cut(s) 475
Hsp92II CATG 5 cut(s) 355, 628, 853, 885, 1337
Ksp22I TGATCA 2 cut(s) 244, 1240
Kzo9I GATC 9 cut(s) 19, 244, 652, 700, 749, 1067, 1147, 1240, 1319
LmnI GCTCC 2 cut(s) 111, 625
Lsp1109I GCAGC 6 cut(s) 526, 604, 616, 619, 1172, 1294
LweI GCATC 5 cut(s) 332, 876, 897, 997, 1060
MabI ACCWGGT 1 cut(s) 916
MaeI CTAG 2 cut(s) 15, 675
MaeII ACGT 4 cut(s) 475, 612, 893, 1133
MaeIII GTNAC 6 cut(s) 79, 142, 179, 260, 509, 757
MalI GATC 9 cut(s) 21, 246, 654, 702, 751, 1069, 1149, 1242, 1321
MbiI CCGCTC 1 cut(s) 114
MboI GATC 9 cut(s) 19, 244, 652, 700, 749, 1067, 1147, 1240, 1319
MboII GAAGA 4 cut(s) 110, 113, 489, 662
MflI RGATCY 2 cut(s) 19, 749
MhlI GDGCHC 2 cut(s) 799, 1172
MluCI AATT 2 cut(s) 199, 1327
MlyI GAGTC 1 cut(s) 1033
MmeI TCCRAC 1 cut(s) 1061
MseI TTAA 2 cut(s) 30, 195
MslI CAYNNNNRTG 1 cut(s) 974
MspI CCGG 3 cut(s) 554, 1110, 1218
MspR9I CCNGG 6 cut(s) 554, 555, 873, 918, 936, 1111
MvaI CCWGG 3 cut(s) 873, 918, 936
MwoI GCNNNNNNNGC 3 cut(s) 536, 985, 1304
NciI CCSGG 3 cut(s) 554, 555, 1111
NcoI CCATGG 1 cut(s) 881
NdeII GATC 9 cut(s) 19, 244, 652, 700, 749, 1067, 1147, 1240, 1319
NlaIII CATG 5 cut(s) 355, 628, 853, 885, 1337
NlaIV GGNNCC 2 cut(s) 751, 1125
NmuCI GTSAC 3 cut(s) 260, 509, 757
NspV TTCGAA 1 cut(s) 203
PfeI GAWTC 5 cut(s) 71, 325, 788, 898, 1191
PkrI GCNGC 8 cut(s) 116, 541, 606, 609, 619, 806, 1162, 1309
PleI GAGTC 1 cut(s) 1033
PmaCI CACGTG 1 cut(s) 894
PmlI CACGTG 1 cut(s) 894
PpsI GAGTC 1 cut(s) 1033
Ppu21I YACGTR 1 cut(s) 894
Psp124BI GAGCTC 1 cut(s) 1172
Psp1406I AACGTT 1 cut(s) 1133
Psp6I CCWGG 3 cut(s) 871, 916, 934
PspCI CACGTG 1 cut(s) 894
PspGI CCWGG 3 cut(s) 871, 916, 934
PspN4I GGNNCC 2 cut(s) 751, 1125
PspPI GGNCC 2 cut(s) 966, 1123
PsuI RGATCY 2 cut(s) 19, 749
RseI CAYNNNNRTG 1 cut(s) 974
SacI GAGCTC 1 cut(s) 1172
SaqAI TTAA 2 cut(s) 30, 195
SatI GCNGC 8 cut(s) 115, 540, 605, 608, 618, 805, 1161, 1308
Sau3AI GATC 9 cut(s) 19, 244, 652, 700, 749, 1067, 1147, 1240, 1319
Sau96I GGNCC 2 cut(s) 966, 1123
SchI GAGTC 1 cut(s) 1033
ScrFI CCNGG 6 cut(s) 554, 555, 873, 918, 936, 1111
SduI GDGCHC 2 cut(s) 799, 1172
SexAI ACCWGGT 1 cut(s) 916
SfaNI GCATC 5 cut(s) 332, 876, 897, 997, 1060
SfuI TTCGAA 1 cut(s) 203
SinI GGWCC 2 cut(s) 966, 1123
SmaI CCCGGG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 3 cut(s) 533, 580, 742
SmoI CTYRAG 3 cut(s) 533, 580, 742
Sse9I AATT 2 cut(s) 199, 1327
SsiI CCGC 7 cut(s) 114, 117, 698, 747, 804, 929, 986
SspMI CTAG 2 cut(s) 15, 675
SstI GAGCTC 1 cut(s) 1172
StyD4I CCNGG 6 cut(s) 552, 553, 871, 916, 934, 1109
StyI CCWWGG 2 cut(s) 216, 881
TaaI ACNGT 6 cut(s) 85, 179, 191, 333, 509, 671
TaiI ACGT 4 cut(s) 478, 615, 896, 1136
TaqI TCGA 4 cut(s) 203, 594, 1073, 1172
TasI AATT 2 cut(s) 199, 1327
TauI GCSGC 2 cut(s) 117, 807
TfiI GAWTC 5 cut(s) 71, 325, 788, 898, 1191
Tru1I TTAA 2 cut(s) 30, 195
Tru9I TTAA 2 cut(s) 30, 195
TscAI CASTG 2 cut(s) 786, 814
TseFI GTSAC 3 cut(s) 260, 509, 757
TseI GCWGC 6 cut(s) 539, 604, 607, 617, 1160, 1307
Tsp45I GTSAC 3 cut(s) 260, 509, 757
TspDTI ATGAA 6 cut(s) 59, 653, 801, 842, 866, 1077
TspGWI ACGGA 1 cut(s) 48
TspMI CCCGGG 1 cut(s) 553
TspRI CASTG 2 cut(s) 786, 814
VpaK11BI GGWCC 2 cut(s) 966, 1123
XagI CCTNNNNNAGG 1 cut(s) 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 879
XmaI CCCGGG 1 cut(s) 553
XspI CTAG 2 cut(s) 15, 675
ZraI GACGTC 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.