Cyclic dof factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47500 |
| fragaria_vesca | FvH4_5g14830 |
| malus_domestica | MD06G1194500.v1.1 MD14G1201600.v1.1 |
| prunus_persica | Prupe.5G194600_v2.0.a1 |
| pyrus_communis | pycom06g17220 pycom14g16700 |
| rosa_chinensis | RchiOBHm_Chr7g0181561 |
| rosa_laevigata | RLG00000005183 |
| rosa_multiflora | Rmu_sc0000988.1_g000022 |
| rosa_roxburghii | Rroxscaffold_3G00271900 |
| rosa_rugosa | Rorug06G0442200 |
| rosa_samantha | Rh7AG044400 Rh7BG043400 Rh7CG045200 Rh7DG044000 |
| rosa_wichuraiana | Rw7G003680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 535 |
| Acc65I | GGTACC | 1 cut(s) | 500 |
| AccB1I | GGYRCC | 1 cut(s) | 500 |
| AccBSI | CCGCTC | 1 cut(s) | 1071 |
| AccII | CGCG | 1 cut(s) | 23 |
| AciI | CCGC | 9 cut(s) | 21, 57, 397, 498, 1044, 1069, 1272, 1275, 1341 |
| AclI | AACGTT | 1 cut(s) | 1020 |
| AclWI | GGATC | 2 cut(s) | 1202, 1368 |
| AcsI | RAATTY | 4 cut(s) | 419, 882, 1081, 1134 |
| AcuI | CTGAAG | 2 cut(s) | 246, 386 |
| AcyI | GRCGYC | 1 cut(s) | 532 |
| AfaI | GTAC | 3 cut(s) | 340, 502, 739 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1014, 1031, 1073, 1094 |
| AflIII | ACRYGT | 1 cut(s) | 850 |
| AgsI | TTSAA | 4 cut(s) | 593, 843, 1080, 1233 |
| AjnI | CCWGG | 4 cut(s) | 72, 253, 905, 955 |
| AluBI | AGCT | 9 cut(s) | 31, 527, 599, 663, 794, 816, 1220, 1361, 1395 |
| AluI | AGCT | 9 cut(s) | 31, 527, 599, 663, 794, 816, 1220, 1361, 1395 |
| Alw21I | GWGCWC | 2 cut(s) | 304, 1397 |
| Alw26I | GTCTC | 3 cut(s) | 146, 1068, 1330 |
| Alw44I | GTGCAC | 1 cut(s) | 300 |
| AlwI | GGATC | 2 cut(s) | 1202, 1368 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 155, 260 |
| AoxI | GGCC | 1 cut(s) | 908 |
| ApaLI | GTGCAC | 1 cut(s) | 300 |
| ApeKI | GCWGC | 5 cut(s) | 399, 596, 926, 1220, 1361 |
| ApoI | RAATTY | 4 cut(s) | 419, 882, 1081, 1134 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 62, 94, 874, 906, 1046, 1078 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1119 |
| Asp718I | GGTACC | 1 cut(s) | 500 |
| AspLEI | GCGC | 1 cut(s) | 1013 |
| AspS9I | GGNCC | 3 cut(s) | 16, 70, 1034 |
| AsuC2I | CCSGG | 2 cut(s) | 897, 1008 |
| AsuHPI | GGTGA | 1 cut(s) | 617 |
| AvaII | GGWCC | 3 cut(s) | 16, 70, 1034 |
| BaeGI | GKGCMC | 2 cut(s) | 304, 1008 |
| BanI | GGYRCC | 1 cut(s) | 500 |
| BanII | GRGCYC | 1 cut(s) | 1397 |
| BbsI | GAAGAC | 4 cut(s) | 234, 281, 884, 1122 |
| Bbv12I | GWGCWC | 2 cut(s) | 304, 1397 |
| BbvCI | CCTCAGC | 1 cut(s) | 659 |
| BbvI | GCAGC | 5 cut(s) | 386, 608, 938, 1207, 1348 |
| BccI | CCATC | 3 cut(s) | 200, 787, 1274 |
| BceAI | ACGGC | 1 cut(s) | 154 |
| BciT130I | CCWGG | 4 cut(s) | 74, 255, 907, 957 |
| BcnI | CCSGG | 2 cut(s) | 897, 1008 |
| BcoDI | GTCTC | 3 cut(s) | 146, 1068, 1330 |
| BfaI | CTAG | 2 cut(s) | 795, 1371 |
| BfmI | CTRYAG | 3 cut(s) | 90, 285, 714 |
| BfoI | RGCGCY | 1 cut(s) | 1014 |
| BisI | GCNGC | 6 cut(s) | 400, 597, 927, 1221, 1273, 1362 |
| BlsI | GCNGC | 6 cut(s) | 401, 598, 928, 1222, 1274, 1363 |
| BmcAI | AGTACT | 1 cut(s) | 340 |
| Bme1390I | CCNGG | 6 cut(s) | 74, 255, 897, 907, 957, 1008 |
| Bme18I | GGWCC | 3 cut(s) | 16, 70, 1034 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 70, 1034 |
| BmiI | GGNNCC | 4 cut(s) | 18, 502, 729, 1185 |
| BmrFI | CCNGG | 6 cut(s) | 74, 255, 897, 907, 957, 1008 |
| BmsI | GCATC | 4 cut(s) | 136, 598, 664, 833 |
| BpiI | GAAGAC | 4 cut(s) | 234, 281, 884, 1122 |
| BpmI | CTGGAG | 2 cut(s) | 802, 939 |
| Bpu10I | CCTNAGC | 1 cut(s) | 659 |
| BpuEI | CTTGAG | 1 cut(s) | 1090 |
| BpuMI | CCSGG | 2 cut(s) | 897, 1008 |
| BsaHI | GRCGYC | 1 cut(s) | 532 |
| BsaJI | CCNNGG | 5 cut(s) | 73, 693, 905, 917, 1025 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1014, 1031, 1073, 1094 |
| Bse118I | RCCGGY | 1 cut(s) | 940 |
| Bse1I | ACTGG | 2 cut(s) | 491, 819 |
| Bse3DI | GCAATG | 1 cut(s) | 652 |
| BseBI | CCWGG | 4 cut(s) | 74, 255, 907, 957 |
| BseDI | CCNNGG | 5 cut(s) | 73, 693, 905, 917, 1025 |
| BseGI | GGATG | 2 cut(s) | 679, 1178 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1014, 1031, 1073, 1094 |
| BseMI | GCAATG | 1 cut(s) | 652 |
| BseMII | CTCAG | 4 cut(s) | 147, 177, 332, 673 |
| BseNI | ACTGG | 2 cut(s) | 491, 819 |
| BseRI | GAGGAG | 1 cut(s) | 137 |
| BseSI | GKGCMC | 2 cut(s) | 304, 1008 |
| BseXI | GCAGC | 5 cut(s) | 386, 608, 938, 1207, 1348 |
| BsgI | GTGCAG | 2 cut(s) | 875, 966 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| BshFI | GGCC | 1 cut(s) | 910 |
| BshNI | GGYRCC | 1 cut(s) | 500 |
| BsiHKAI | GWGCWC | 2 cut(s) | 304, 1397 |
| BsiSI | CCGG | 3 cut(s) | 897, 941, 1008 |
| BslFI | GGGAC | 2 cut(s) | 812, 1124 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1014, 1031, 1073, 1094 |
| BsmAI | GTCTC | 3 cut(s) | 146, 1068, 1330 |
| BsmBI | CGTCTC | 1 cut(s) | 1330 |
| BsmFI | GGGAC | 2 cut(s) | 812, 1124 |
| BsmI | GAATGC | 1 cut(s) | 928 |
| BsnI | GGCC | 1 cut(s) | 910 |
| Bsp1286I | GDGCHC | 3 cut(s) | 304, 1008, 1397 |
| Bsp143I | GATC | 3 cut(s) | 24, 1207, 1373 |
| Bsp19I | CCATGG | 2 cut(s) | 693, 917 |
| BspACI | CCGC | 9 cut(s) | 21, 57, 397, 498, 1044, 1069, 1272, 1275, 1341 |
| BspANI | GGCC | 1 cut(s) | 910 |
| BspCNI | CTCAG | 4 cut(s) | 148, 178, 331, 672 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspHI | TCATGA | 2 cut(s) | 1387, 1397 |
| BspLI | GGNNCC | 4 cut(s) | 18, 502, 729, 1185 |
| BspMAI | CTGCAG | 1 cut(s) | 718 |
| BspPI | GGATC | 2 cut(s) | 1202, 1368 |
| BspQI | GCTCTTC | 1 cut(s) | 38 |
| BspT107I | GGYRCC | 1 cut(s) | 500 |
| BsrBI | CCGCTC | 1 cut(s) | 1071 |
| BsrDI | GCAATG | 1 cut(s) | 652 |
| BsrFI | RCCGGY | 1 cut(s) | 940 |
| BsrI | ACTGG | 2 cut(s) | 491, 819 |
| BssAI | RCCGGY | 1 cut(s) | 940 |
| BssECI | CCNNGG | 5 cut(s) | 73, 693, 905, 917, 1025 |
| BssMI | GATC | 3 cut(s) | 24, 1207, 1373 |
| BssNI | GRCGYC | 1 cut(s) | 532 |
| BssT1I | CCWWGG | 3 cut(s) | 693, 917, 1025 |
| Bst2UI | CCWGG | 4 cut(s) | 74, 255, 907, 957 |
| Bst4CI | ACNGT | 2 cut(s) | 998, 1324 |
| Bst6I | CTCTTC | 6 cut(s) | 38, 114, 126, 348, 880, 1143 |
| BstACI | GRCGYC | 1 cut(s) | 532 |
| BstC8I | GCNNGC | 3 cut(s) | 85, 496, 1350 |
| BstDEI | CTNAG | 5 cut(s) | 12, 156, 186, 318, 659 |
| BstDSI | CCRYGG | 2 cut(s) | 693, 917 |
| BstF5I | GGATG | 2 cut(s) | 679, 1178 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstH2I | RGCGCY | 1 cut(s) | 1014 |
| BstHHI | GCGC | 1 cut(s) | 1013 |
| BstKTI | GATC | 3 cut(s) | 27, 1210, 1376 |
| BstMAI | GTCTC | 3 cut(s) | 146, 1068, 1330 |
| BstMBI | GATC | 3 cut(s) | 24, 1207, 1373 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 166, 399, 405, 593, 813, 1349, 1358 |
| BstNI | CCWGG | 4 cut(s) | 74, 255, 907, 957 |
| BstNSI | RCATGY | 1 cut(s) | 854 |
| BstSCI | CCNGG | 6 cut(s) | 72, 253, 895, 905, 955, 1006 |
| BstSFI | CTRYAG | 3 cut(s) | 90, 285, 714 |
| BstSLI | GKGCMC | 2 cut(s) | 304, 1008 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 5 cut(s) | 386, 608, 938, 1207, 1348 |
| BstV2I | GAAGAC | 4 cut(s) | 234, 281, 884, 1122 |
| BstX2I | RGATCY | 1 cut(s) | 1373 |
| BstYI | RGATCY | 1 cut(s) | 1373 |
| BsuRI | GGCC | 1 cut(s) | 910 |
| BtgI | CCRYGG | 2 cut(s) | 693, 917 |
| BtgZI | GCGATG | 1 cut(s) | 822 |
| BtsCI | GGATG | 2 cut(s) | 679, 1178 |
| BtsIMutI | CAGTG | 1 cut(s) | 826 |
| Cac8I | GCNNGC | 3 cut(s) | 85, 496, 1350 |
| CaiI | CAGNNNCTG | 2 cut(s) | 155, 260 |
| CciI | TCATGA | 2 cut(s) | 1387, 1397 |
| CfoI | GCGC | 1 cut(s) | 1013 |
| Cfr10I | RCCGGY | 1 cut(s) | 940 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 70, 1034 |
| CsiI | ACCWGGT | 1 cut(s) | 253 |
| Csp6I | GTAC | 3 cut(s) | 339, 501, 738 |
| CviAII | CATG | 9 cut(s) | 390, 409, 505, 571, 694, 851, 918, 1388, 1398 |
| CviQI | GTAC | 3 cut(s) | 339, 501, 738 |
| DdeI | CTNAG | 5 cut(s) | 12, 156, 186, 318, 659 |
| DpnI | GATC | 3 cut(s) | 26, 1209, 1375 |
| DpnII | GATC | 3 cut(s) | 24, 1207, 1373 |
| Eam1104I | CTCTTC | 6 cut(s) | 38, 114, 126, 348, 880, 1143 |
| EarI | CTCTTC | 6 cut(s) | 38, 114, 126, 348, 880, 1143 |
| EciI | GGCGGA | 1 cut(s) | 1290 |
| Ecl136II | GAGCTC | 1 cut(s) | 1395 |
| Eco130I | CCWWGG | 3 cut(s) | 693, 917, 1025 |
| Eco24I | GRGCYC | 1 cut(s) | 1397 |
| Eco47I | GGWCC | 3 cut(s) | 16, 70, 1034 |
| Eco53kI | GAGCTC | 1 cut(s) | 1395 |
| Eco57I | CTGAAG | 2 cut(s) | 246, 386 |
| EcoICRI | GAGCTC | 1 cut(s) | 1395 |
| EcoO109I | RGGNCCY | 2 cut(s) | 16, 70 |
| EcoRII | CCWGG | 4 cut(s) | 72, 253, 905, 955 |
| EcoT14I | CCWWGG | 3 cut(s) | 693, 917, 1025 |
| EcoT38I | GRGCYC | 1 cut(s) | 1397 |
| ErhI | CCWWGG | 3 cut(s) | 693, 917, 1025 |
| Esp3I | CGTCTC | 1 cut(s) | 1330 |
| FaeI | CATG | 9 cut(s) | 393, 412, 508, 574, 697, 854, 921, 1391, 1401 |
| FaqI | GGGAC | 2 cut(s) | 812, 1124 |
| FatI | CATG | 9 cut(s) | 389, 408, 504, 570, 693, 850, 917, 1387, 1397 |
| FauI | CCCGC | 6 cut(s) | 28, 64, 404, 1051, 1076, 1348 |
| Fnu4HI | GCNGC | 6 cut(s) | 400, 597, 927, 1221, 1273, 1362 |
| FokI | GGATG | 2 cut(s) | 686, 1185 |
| FriOI | GRGCYC | 1 cut(s) | 1397 |
| Fsp4HI | GCNGC | 6 cut(s) | 400, 597, 927, 1221, 1273, 1362 |
| FspBI | CTAG | 2 cut(s) | 795, 1371 |
| GlaI | GCGC | 1 cut(s) | 1012 |
| GluI | GCNGC | 6 cut(s) | 400, 597, 927, 1221, 1273, 1362 |
| GsuI | CTGGAG | 2 cut(s) | 802, 939 |
| HaeII | RGCGCY | 1 cut(s) | 1014 |
| HaeIII | GGCC | 1 cut(s) | 910 |
| HapII | CCGG | 3 cut(s) | 897, 941, 1008 |
| HhaI | GCGC | 1 cut(s) | 1013 |
| Hin1I | GRCGYC | 1 cut(s) | 532 |
| Hin1II | CATG | 9 cut(s) | 393, 412, 508, 574, 697, 854, 921, 1391, 1401 |
| Hin6I | GCGC | 1 cut(s) | 1011 |
| HinP1I | GCGC | 1 cut(s) | 1011 |
| HinfI | GANTC | 7 cut(s) | 164, 654, 689, 1151, 1251, 1262, 1331 |
| HpaII | CCGG | 3 cut(s) | 897, 941, 1008 |
| HphI | GGTGA | 1 cut(s) | 617 |
| Hpy166II | GTNNAC | 5 cut(s) | 268, 302, 625, 752, 1037 |
| Hpy188I | TCNGA | 8 cut(s) | 226, 321, 352, 603, 668, 1212, 1250, 1330 |
| Hpy188III | TCNNGA | 8 cut(s) | 37, 242, 590, 1158, 1255, 1371, 1388, 1398 |
| Hpy8I | GTNNAC | 5 cut(s) | 268, 302, 625, 752, 1037 |
| Hpy99I | CGWCG | 1 cut(s) | 537 |
| HpyCH4III | ACNGT | 2 cut(s) | 998, 1324 |
| HpyCH4IV | ACGT | 4 cut(s) | 444, 532, 1020, 1119 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 166, 399, 405, 593, 813, 1349, 1358 |
| HpyF3I | CTNAG | 5 cut(s) | 12, 156, 186, 318, 659 |
| HpySE526I | ACGT | 4 cut(s) | 444, 532, 1020, 1119 |
| Hsp92I | GRCGYC | 1 cut(s) | 532 |
| Hsp92II | CATG | 9 cut(s) | 393, 412, 508, 574, 697, 854, 921, 1391, 1401 |
| HspAI | GCGC | 1 cut(s) | 1011 |
| KpnI | GGTACC | 1 cut(s) | 504 |
| Kzo9I | GATC | 3 cut(s) | 24, 1207, 1373 |
| LguI | GCTCTTC | 1 cut(s) | 38 |
| LmnI | GCTCC | 3 cut(s) | 524, 616, 821 |
| Lsp1109I | GCAGC | 5 cut(s) | 386, 608, 938, 1207, 1348 |
| LweI | GCATC | 4 cut(s) | 136, 598, 664, 833 |
| MabI | ACCWGGT | 1 cut(s) | 253 |
| MaeI | CTAG | 2 cut(s) | 795, 1371 |
| MaeII | ACGT | 4 cut(s) | 444, 532, 1020, 1119 |
| MaeIII | GTNAC | 3 cut(s) | 171, 425, 1307 |
| MalI | GATC | 3 cut(s) | 26, 1209, 1375 |
| MbiI | CCGCTC | 1 cut(s) | 1071 |
| MboI | GATC | 3 cut(s) | 24, 1207, 1373 |
| MflI | RGATCY | 1 cut(s) | 1373 |
| MhlI | GDGCHC | 3 cut(s) | 304, 1008, 1397 |
| MluCI | AATT | 6 cut(s) | 113, 419, 436, 882, 1081, 1134 |
| MlyI | GAGTC | 3 cut(s) | 663, 1160, 1256 |
| MmeI | TCCRAC | 1 cut(s) | 1112 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1119 |
| MseI | TTAA | 3 cut(s) | 638, 1287, 1380 |
| MspA1I | CMGCKG | 3 cut(s) | 399, 1272, 1361 |
| MspI | CCGG | 3 cut(s) | 897, 941, 1008 |
| MspR9I | CCNGG | 6 cut(s) | 74, 255, 897, 907, 957, 1008 |
| Mva1269I | GAATGC | 1 cut(s) | 928 |
| MvaI | CCWGG | 4 cut(s) | 74, 255, 907, 957 |
| MvnI | CGCG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 166, 399, 405, 593, 813, 1349, 1358 |
| NciI | CCSGG | 2 cut(s) | 897, 1008 |
| NcoI | CCATGG | 2 cut(s) | 693, 917 |
| NdeII | GATC | 3 cut(s) | 24, 1207, 1373 |
| NlaIII | CATG | 9 cut(s) | 393, 412, 508, 574, 697, 854, 921, 1391, 1401 |
| NlaIV | GGNNCC | 4 cut(s) | 18, 502, 729, 1185 |
| NmuCI | GTSAC | 2 cut(s) | 171, 1307 |
| NspI | RCATGY | 1 cut(s) | 854 |
| PagI | TCATGA | 2 cut(s) | 1387, 1397 |
| PciI | ACATGT | 1 cut(s) | 850 |
| PciSI | GCTCTTC | 1 cut(s) | 38 |
| PctI | GAATGC | 1 cut(s) | 928 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1119 |
| PfeI | GAWTC | 4 cut(s) | 164, 689, 1251, 1331 |
| PfoI | TCCNGGA | 1 cut(s) | 955 |
| PkrI | GCNGC | 6 cut(s) | 401, 598, 928, 1222, 1274, 1363 |
| PleI | GAGTC | 3 cut(s) | 662, 1159, 1256 |
| PpsI | GAGTC | 3 cut(s) | 662, 1159, 1256 |
| PpuMI | RGGWCCY | 2 cut(s) | 16, 70 |
| PscI | ACATGT | 1 cut(s) | 850 |
| Psp124BI | GAGCTC | 1 cut(s) | 1397 |
| Psp1406I | AACGTT | 1 cut(s) | 1020 |
| Psp5II | RGGWCCY | 2 cut(s) | 16, 70 |
| Psp6I | CCWGG | 4 cut(s) | 72, 253, 905, 955 |
| PspGI | CCWGG | 4 cut(s) | 72, 253, 905, 955 |
| PspN4I | GGNNCC | 4 cut(s) | 18, 502, 729, 1185 |
| PspPI | GGNCC | 3 cut(s) | 16, 70, 1034 |
| PspPPI | RGGWCCY | 2 cut(s) | 16, 70 |
| PstI | CTGCAG | 1 cut(s) | 718 |
| PstNI | CAGNNNCTG | 2 cut(s) | 155, 260 |
| PsuI | RGATCY | 1 cut(s) | 1373 |
| PvuII | CAGCTG | 1 cut(s) | 1361 |
| RsaI | GTAC | 3 cut(s) | 340, 502, 739 |
| RsaNI | GTAC | 3 cut(s) | 339, 501, 738 |
| SacI | GAGCTC | 1 cut(s) | 1397 |
| SapI | GCTCTTC | 1 cut(s) | 38 |
| SaqAI | TTAA | 3 cut(s) | 638, 1287, 1380 |
| SatI | GCNGC | 6 cut(s) | 400, 597, 927, 1221, 1273, 1362 |
| Sau3AI | GATC | 3 cut(s) | 24, 1207, 1373 |
| Sau96I | GGNCC | 3 cut(s) | 16, 70, 1034 |
| ScaI | AGTACT | 1 cut(s) | 340 |
| SchI | GAGTC | 3 cut(s) | 663, 1160, 1256 |
| ScrFI | CCNGG | 6 cut(s) | 74, 255, 897, 907, 957, 1008 |
| SduI | GDGCHC | 3 cut(s) | 304, 1008, 1397 |
| SexAI | ACCWGGT | 1 cut(s) | 253 |
| SfaNI | GCATC | 4 cut(s) | 136, 598, 664, 833 |
| SfcI | CTRYAG | 3 cut(s) | 90, 285, 714 |
| SinI | GGWCC | 3 cut(s) | 16, 70, 1034 |
| SmlI | CTYRAG | 1 cut(s) | 1105 |
| SmoI | CTYRAG | 1 cut(s) | 1105 |
| Sse9I | AATT | 6 cut(s) | 113, 419, 436, 882, 1081, 1134 |
| SsiI | CCGC | 9 cut(s) | 21, 57, 397, 498, 1044, 1069, 1272, 1275, 1341 |
| SspMI | CTAG | 2 cut(s) | 795, 1371 |
| SstI | GAGCTC | 1 cut(s) | 1397 |
| StyD4I | CCNGG | 6 cut(s) | 72, 253, 895, 905, 955, 1006 |
| StyI | CCWWGG | 3 cut(s) | 693, 917, 1025 |
| TaaI | ACNGT | 2 cut(s) | 998, 1324 |
| TaiI | ACGT | 4 cut(s) | 447, 535, 1023, 1122 |
| TaqI | TCGA | 3 cut(s) | 66, 182, 742 |
| TasI | AATT | 6 cut(s) | 113, 419, 436, 882, 1081, 1134 |
| TatI | WGTACW | 1 cut(s) | 338 |
| TauI | GCSGC | 1 cut(s) | 1275 |
| TfiI | GAWTC | 4 cut(s) | 164, 689, 1251, 1331 |
| Tru1I | TTAA | 3 cut(s) | 638, 1287, 1380 |
| Tru9I | TTAA | 3 cut(s) | 638, 1287, 1380 |
| TscAI | CASTG | 1 cut(s) | 826 |
| TseFI | GTSAC | 2 cut(s) | 171, 1307 |
| TseI | GCWGC | 5 cut(s) | 399, 596, 926, 1220, 1361 |
| Tsp45I | GTSAC | 2 cut(s) | 171, 1307 |
| TspDTI | ATGAA | 2 cut(s) | 306, 1376 |
| TspGWI | ACGGA | 1 cut(s) | 338 |
| TspRI | CASTG | 1 cut(s) | 826 |
| VneI | GTGCAC | 1 cut(s) | 300 |
| VpaK11BI | GGWCC | 3 cut(s) | 16, 70, 1034 |
| XapI | RAATTY | 4 cut(s) | 419, 882, 1081, 1134 |
| XbaI | TCTAGA | 1 cut(s) | 1370 |
| XceI | RCATGY | 1 cut(s) | 854 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1119 |
| XspI | CTAG | 2 cut(s) | 795, 1371 |
| ZraI | GACGTC | 1 cut(s) | 533 |
| ZrmI | AGTACT | 1 cut(s) | 340 |